pycom08g17150

acid phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0012044
Physical Location & Seq
Forward (+)
17316100 .. 17317016
917 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g17150.1

Sequence Viewer

Length: 846 bp
ATGGCGGTGGGCTGGATTGTTGAGGATAAAGCCCAGAACCATGATTGGGCTGGATTGTTGAGAATAAAAGCCCAAACCGTGGGCTGGATTGTTAAAGATAAAGCCCAAAACCGTGAGCCTATTGGCATCACTTTGCTACCTCACTCCTTCCACTCCTTCTCCTCCCTCCTTCTCGATTCTCAATCCGAAACCAGAAAGCTCTTTCCGATTCCCGCAAAGATCTTTCTGGGTTCAGCAAAATCAATGGCCTCCGTTCGCCACCGCCCTCTCCTGCTCCTCATCACCCTCCTCGCAATCCCCACGTCCTTATCATCCCAATCCATCATCCAAATGCCGACGAAACGACACCGCGTCTCCGCCTCCGACGACAGCCTCTTCTGCGACAGCTGGAGATTCTCCGTCGAGACCAACGACGCCGGGACCTGGTCCAACATTCCGTCCAGGTGCGTCGGGTTCGTCCAGAACTACATGACCGGCGACCGGTACCTGTCCGATTCGGCGGCCGTCGCGAATTTCTCGCCGAGCTTCGCGAAGGGGGTGACCAAAGGCGGCGATGGGAATGACGCGTGGGTGTTCGACATCGATGAGACTCTGCTTTCGAATTTGCCCTACTATCAGGCACATGGATTCGGATCAGAGACGTTCGATGAAGCATCTTTCGATGAGTGGGTGGAGTTGGCCGAGGCCCCTGCTCTCCCAGCAAGTTTAAATCTATACAGTCAGCTTGAGCGGTTGGGTTTCAAGATTTTTCTGTTAACTGGGCGGAGCGAATATCAGAGAAATGCCACCGCGAAAAACCTTCTAGTTGCAGGTTACAACAATTGGGAGAGGCTGCTGCTGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acid_phosphat_B

Protein Analysis

282

Amino Acids

31.34

Weight (kDa)

6.31

Isoelectric Point (pI)

35.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acid_phosphat_B PF03767 118 - 281 1.3e-53 HAD superfamily, subfamily IIIB (Acid phosphatase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012044)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29260 AT4G29270
fragaria_vesca FvH4_1g06500
malus_domestica MD02G1068300.v1.1
prunus_persica Prupe.7G217300_v2.0.a1
pyrus_communis pycom02g05410 pycom08g17150 pycom15g17740
rosa_chinensis RchiOBHm_Chr2g0092251
rosa_laevigata RLG00000016290
rosa_multiflora Rmu_sc0000524.1_g000032 Rmu_sc0030540.1_g000001
rosa_roxburghii Rroxscaffold_2G00149330
rosa_rugosa Rorug02G0024100
rosa_samantha Rh2AG069900 Rh2BG069400 Rh2CG070600 Rh2DG068400
rosa_wichuraiana Rw2G006230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 800
Acc65I GGTACC 1 cut(s) 483
AccB1I GGYRCC 1 cut(s) 483
AccB7I CCANNNNNTGG 1 cut(s) 79
AccBSI CCGCTC 1 cut(s) 730
AccII CGCG 5 cut(s) 351, 509, 530, 566, 791
AclWI GGATC 1 cut(s) 640
AcoI YGGCCR 2 cut(s) 501, 678
AcsI RAATTY 2 cut(s) 511, 601
AcyI GRCGYC 1 cut(s) 414
AfaI GTAC 1 cut(s) 485
AfiI CCNNNNNNNGG 5 cut(s) 46, 79, 84, 423, 480
AflIII ACRYGT 1 cut(s) 564
AgeI ACCGGT 1 cut(s) 480
AgsI TTSAA 1 cut(s) 742
AhdI GACNNNNNGTC 1 cut(s) 350
AjiI CACGTC 1 cut(s) 303
AjnI CCWGG 2 cut(s) 422, 440
AluBI AGCT 4 cut(s) 199, 387, 525, 724
AluI AGCT 4 cut(s) 199, 387, 525, 724
Alw26I GTCTC 4 cut(s) 358, 398, 581, 632
AlwI GGATC 1 cut(s) 640
AoxI GGCC 4 cut(s) 246, 501, 678, 684
ApeKI GCWGC 2 cut(s) 832, 835
ApoI RAATTY 2 cut(s) 511, 601
ArsI GACNNNNNNTTYG 2 cut(s) 580, 612
AsiGI ACCGGT 1 cut(s) 480
Asp718I GGTACC 1 cut(s) 483
AspS9I GGNCC 3 cut(s) 420, 426, 685
AsuC2I CCSGG 1 cut(s) 418
AsuHPI GGTGA 2 cut(s) 274, 550
AsuII TTCGAA 1 cut(s) 599
AvaII GGWCC 2 cut(s) 420, 426
BanI GGYRCC 1 cut(s) 483
BbvI GCAGC 2 cut(s) 819, 822
BccI CCATC 2 cut(s) 329, 548
BceAI ACGGC 1 cut(s) 488
BcgI CGANNNNNNTGC 2 cut(s) 671, 705
BciT130I CCWGG 2 cut(s) 424, 442
BcnI CCSGG 1 cut(s) 418
BcoDI GTCTC 4 cut(s) 358, 398, 581, 632
BfaI CTAG 1 cut(s) 803
BfuAI ACCTGC 1 cut(s) 800
BglII AGATCT 1 cut(s) 219
BisI GCNGC 4 cut(s) 501, 550, 833, 836
BlsI GCNGC 4 cut(s) 502, 551, 834, 837
Bme1390I CCNGG 3 cut(s) 418, 424, 442
Bme18I GGWCC 2 cut(s) 420, 426
BmeRI GACNNNNNGTC 1 cut(s) 350
BmgBI CACGTC 1 cut(s) 303
BmgT120I GGNCC 3 cut(s) 420, 426, 685
BmiI GGNNCC 3 cut(s) 421, 485, 687
BmrFI CCNGG 3 cut(s) 418, 424, 442
BmrI ACTGGG 1 cut(s) 768
BmsI GCATC 2 cut(s) 135, 662
BmuI ACTGGG 1 cut(s) 768
BpmI CTGGAG 1 cut(s) 409
Bpu14I TTCGAA 1 cut(s) 599
BpuEI CTTGAG 1 cut(s) 746
BpuMI CCSGG 1 cut(s) 418
Bsa29I ATCGAT 1 cut(s) 582
BsaBI GATNNNNATC 1 cut(s) 631
BsaHI GRCGYC 1 cut(s) 414
BsaI GGTCTC 1 cut(s) 398
BsaJI CCNNGG 2 cut(s) 78, 681
BsaWI WCCGGW 1 cut(s) 480
BsaXI ACNNNNNCTCC 4 cut(s) 143, 173, 338, 368
Bsc4I CCNNNNNNNGG 5 cut(s) 46, 79, 84, 423, 480
Bse118I RCCGGY 2 cut(s) 473, 480
Bse1I ACTGG 1 cut(s) 763
Bse8I GATNNNNATC 1 cut(s) 631
BseBI CCWGG 2 cut(s) 424, 442
BseCI ATCGAT 1 cut(s) 582
BseDI CCNNGG 2 cut(s) 78, 681
BseGI GGATG 2 cut(s) 311, 324
BseJI GATNNNNATC 1 cut(s) 631
BseLI CCNNNNNNNGG 5 cut(s) 46, 79, 84, 423, 480
BseMII CTCAG 1 cut(s) 830
BseNI ACTGG 1 cut(s) 763
BseRI GAGGAG 3 cut(s) 151, 266, 278
BseX3I CGGCCG 1 cut(s) 501
BseXI GCAGC 2 cut(s) 819, 822
BseYI CCCAGC 1 cut(s) 697
Bsh1236I CGCG 5 cut(s) 351, 509, 530, 566, 791
Bsh1285I CGRYCG 2 cut(s) 481, 504
BshFI GGCC 4 cut(s) 248, 503, 680, 686
BshNI GGYRCC 1 cut(s) 483
BshTI ACCGGT 1 cut(s) 480
BshVI ATCGAT 1 cut(s) 582
BsiEI CGRYCG 2 cut(s) 481, 504
BsiSI CCGG 3 cut(s) 417, 474, 481
BslFI GGGAC 1 cut(s) 433
BslI CCNNNNNNNGG 5 cut(s) 46, 79, 84, 423, 480
BsmAI GTCTC 4 cut(s) 358, 398, 581, 632
BsmBI CGTCTC 2 cut(s) 358, 632
BsmFI GGGAC 1 cut(s) 433
BsnI GGCC 4 cut(s) 248, 503, 680, 686
Bso31I GGTCTC 1 cut(s) 398
Bsp119I TTCGAA 1 cut(s) 599
Bsp143I GATC 2 cut(s) 219, 632
Bsp68I TCGCGA 2 cut(s) 509, 530
BspANI GGCC 4 cut(s) 248, 503, 680, 686
BspCNI CTCAG 1 cut(s) 831
BspDI ATCGAT 1 cut(s) 582
BspFNI CGCG 5 cut(s) 351, 509, 530, 566, 791
BspLI GGNNCC 3 cut(s) 421, 485, 687
BspMI ACCTGC 1 cut(s) 800
BspPI GGATC 1 cut(s) 640
BspT104I TTCGAA 1 cut(s) 599
BspT107I GGYRCC 1 cut(s) 483
BspTNI GGTCTC 1 cut(s) 398
BsrBI CCGCTC 1 cut(s) 730
BsrFI RCCGGY 2 cut(s) 473, 480
BsrI ACTGG 1 cut(s) 763
BssAI RCCGGY 2 cut(s) 473, 480
BssECI CCNNGG 2 cut(s) 78, 681
BssMI GATC 2 cut(s) 219, 632
BssNI GRCGYC 1 cut(s) 414
Bst2UI CCWGG 2 cut(s) 424, 442
Bst4CI ACNGT 3 cut(s) 79, 113, 719
Bst6I CTCTTC 1 cut(s) 380
BstACI GRCGYC 1 cut(s) 414
BstBI TTCGAA 1 cut(s) 599
BstDEI CTNAG 1 cut(s) 839
BstDSI CCRYGG 1 cut(s) 78
BstEII GGTNACC 1 cut(s) 538
BstF5I GGATG 2 cut(s) 311, 324
BstFNI CGCG 5 cut(s) 351, 509, 530, 566, 791
BstKTI GATC 2 cut(s) 222, 635
BstMAI GTCTC 4 cut(s) 358, 398, 581, 632
BstMBI GATC 2 cut(s) 219, 632
BstMCI CGRYCG 2 cut(s) 481, 504
BstMWI GCNNNNNNNGC 3 cut(s) 378, 506, 698
BstNI CCWGG 2 cut(s) 424, 442
BstPI GGTNACC 1 cut(s) 538
BstSCI CCNGG 3 cut(s) 416, 422, 440
BstUI CGCG 5 cut(s) 351, 509, 530, 566, 791
BstV1I GCAGC 2 cut(s) 819, 822
BstX2I RGATCY 1 cut(s) 219
BstYI RGATCY 1 cut(s) 219
BstZI CGGCCG 1 cut(s) 501
Bsu15I ATCGAT 1 cut(s) 582
BsuRI GGCC 4 cut(s) 248, 503, 680, 686
BsuTUI ATCGAT 1 cut(s) 582
BtgI CCRYGG 1 cut(s) 78
BtgZI GCGATG 1 cut(s) 567
BtrI CACGTC 1 cut(s) 303
BtsCI GGATG 2 cut(s) 311, 324
BtuMI TCGCGA 2 cut(s) 509, 530
BveI ACCTGC 1 cut(s) 800
Cfr10I RCCGGY 2 cut(s) 473, 480
Cfr13I GGNCC 3 cut(s) 420, 426, 685
ClaI ATCGAT 1 cut(s) 582
CseI GACGC 4 cut(s) 340, 422, 436, 572
CsiI ACCWGGT 1 cut(s) 422
Csp6I GTAC 1 cut(s) 484
CspAI ACCGGT 1 cut(s) 480
CviAII CATG 3 cut(s) 41, 469, 623
CviQI GTAC 1 cut(s) 484
DdeI CTNAG 1 cut(s) 839
DpnI GATC 2 cut(s) 221, 634
DpnII GATC 2 cut(s) 219, 632
DraI TTTAAA 1 cut(s) 708
DriI GACNNNNNGTC 1 cut(s) 350
EaeI YGGCCR 2 cut(s) 501, 678
EagI CGGCCG 1 cut(s) 501
Eam1104I CTCTTC 1 cut(s) 380
Eam1105I GACNNNNNGTC 1 cut(s) 350
EarI CTCTTC 1 cut(s) 380
EciI GGCGGA 2 cut(s) 346, 778
EclXI CGGCCG 1 cut(s) 501
Eco31I GGTCTC 1 cut(s) 398
Eco47I GGWCC 2 cut(s) 420, 426
Eco52I CGGCCG 1 cut(s) 501
Eco91I GGTNACC 1 cut(s) 538
EcoO109I RGGNCCY 2 cut(s) 420, 685
EcoO65I GGTNACC 1 cut(s) 538
EcoRII CCWGG 2 cut(s) 422, 440
Esp3I CGTCTC 2 cut(s) 358, 632
FaeI CATG 3 cut(s) 44, 472, 626
FaiI YATR 4 cut(s) 42, 470, 624, 715
FaqI GGGAC 1 cut(s) 433
FatI CATG 3 cut(s) 40, 468, 622
FauI CCCGC 1 cut(s) 220
Fnu4HI GCNGC 4 cut(s) 501, 550, 833, 836
FokI GGATG 2 cut(s) 298, 311
Fsp4HI GCNGC 4 cut(s) 501, 550, 833, 836
FspBI CTAG 1 cut(s) 803
GluI GCNGC 4 cut(s) 501, 550, 833, 836
GsaI CCCAGC 1 cut(s) 701
GsuI CTGGAG 1 cut(s) 409
HaeIII GGCC 4 cut(s) 248, 503, 680, 686
HapII CCGG 3 cut(s) 417, 474, 481
HgaI GACGC 4 cut(s) 340, 422, 436, 572
Hin1I GRCGYC 1 cut(s) 414
Hin1II CATG 3 cut(s) 44, 472, 626
HincII GTYRAC 1 cut(s) 756
HindII GTYRAC 1 cut(s) 756
HinfI GANTC 6 cut(s) 176, 208, 393, 494, 589, 627
HpaI GTTAAC 1 cut(s) 756
HpaII CCGG 3 cut(s) 417, 474, 481
HphI GGTGA 2 cut(s) 274, 550
Hpy166II GTNNAC 1 cut(s) 756
Hpy188I TCNGA 7 cut(s) 187, 207, 364, 493, 632, 637, 777
Hpy188III TCNNGA 6 cut(s) 173, 403, 460, 508, 529, 742
Hpy8I GTNNAC 1 cut(s) 756
Hpy99I CGWCG 6 cut(s) 340, 368, 404, 416, 452, 509
HpyAV CCTTC 5 cut(s) 157, 166, 179, 526, 809
HpyCH4III ACNGT 3 cut(s) 79, 113, 719
HpyCH4IV ACGT 2 cut(s) 302, 641
HpyCH4V TGCA 1 cut(s) 809
HpyF10VI GCNNNNNNNGC 3 cut(s) 378, 506, 698
HpyF3I CTNAG 1 cut(s) 839
HpySE526I ACGT 2 cut(s) 302, 641
Hsp92I GRCGYC 1 cut(s) 414
Hsp92II CATG 3 cut(s) 44, 472, 626
KpnI GGTACC 1 cut(s) 487
KspAI GTTAAC 1 cut(s) 756
Kzo9I GATC 2 cut(s) 219, 632
LmnI GCTCC 2 cut(s) 279, 765
Lsp1109I GCAGC 2 cut(s) 819, 822
LweI GCATC 2 cut(s) 135, 662
MabI ACCWGGT 1 cut(s) 422
MaeI CTAG 1 cut(s) 803
MaeII ACGT 2 cut(s) 302, 641
MaeIII GTNAC 2 cut(s) 538, 812
MalI GATC 2 cut(s) 221, 634
MbiI CCGCTC 1 cut(s) 730
MboI GATC 2 cut(s) 219, 632
MboII GAAGA 1 cut(s) 367
MfeI CAATTG 1 cut(s) 820
MflI RGATCY 1 cut(s) 219
MluCI AATT 3 cut(s) 511, 601, 820
MluI ACGCGT 1 cut(s) 564
MlyI GAGTC 1 cut(s) 583
MmeI TCCRAC 2 cut(s) 387, 453
MseI TTAA 3 cut(s) 93, 707, 755
MslI CAYNNNNRTG 1 cut(s) 329
MspA1I CMGCKG 1 cut(s) 387
MspI CCGG 3 cut(s) 417, 474, 481
MspR9I CCNGG 3 cut(s) 418, 424, 442
MunI CAATTG 1 cut(s) 820
MvaI CCWGG 2 cut(s) 424, 442
MvnI CGCG 5 cut(s) 351, 509, 530, 566, 791
MwoI GCNNNNNNNGC 3 cut(s) 378, 506, 698
NciI CCSGG 1 cut(s) 418
NdeII GATC 2 cut(s) 219, 632
NlaIII CATG 3 cut(s) 44, 472, 626
NlaIV GGNNCC 3 cut(s) 421, 485, 687
NmeAIII GCCGAG 2 cut(s) 546, 706
NmuCI GTSAC 1 cut(s) 538
NruI TCGCGA 2 cut(s) 509, 530
NspV TTCGAA 1 cut(s) 599
PcsI WCGNNNNNNNCGW 1 cut(s) 408
PfeI GAWTC 5 cut(s) 176, 208, 393, 494, 627
PflFI GACNNNGTC 1 cut(s) 424
PflMI CCANNNNNTGG 1 cut(s) 79
PinAI ACCGGT 1 cut(s) 480
PkrI GCNGC 4 cut(s) 502, 551, 834, 837
PleI GAGTC 1 cut(s) 583
PpsI GAGTC 1 cut(s) 583
PpuMI RGGWCCY 1 cut(s) 420
Psp5II RGGWCCY 1 cut(s) 420
Psp6I CCWGG 2 cut(s) 422, 440
PspEI GGTNACC 1 cut(s) 538
PspFI CCCAGC 1 cut(s) 697
PspGI CCWGG 2 cut(s) 422, 440
PspN4I GGNNCC 3 cut(s) 421, 485, 687
PspPI GGNCC 3 cut(s) 420, 426, 685
PspPPI RGGWCCY 1 cut(s) 420
PsuI RGATCY 1 cut(s) 219
PsyI GACNNNGTC 1 cut(s) 424
PvuII CAGCTG 1 cut(s) 387
RruI TCGCGA 2 cut(s) 509, 530
RsaI GTAC 1 cut(s) 485
RsaNI GTAC 1 cut(s) 484
RseI CAYNNNNRTG 1 cut(s) 329
SaqAI TTAA 3 cut(s) 93, 707, 755
SatI GCNGC 4 cut(s) 501, 550, 833, 836
Sau3AI GATC 2 cut(s) 219, 632
Sau96I GGNCC 3 cut(s) 420, 426, 685
SchI GAGTC 1 cut(s) 583
ScrFI CCNGG 3 cut(s) 418, 424, 442
SexAI ACCWGGT 1 cut(s) 422
SfaNI GCATC 2 cut(s) 135, 662
SfuI TTCGAA 1 cut(s) 599
SinI GGWCC 2 cut(s) 420, 426
SmiMI CAYNNNNRTG 1 cut(s) 329
SmlI CTYRAG 1 cut(s) 725
SmoI CTYRAG 1 cut(s) 725
Sse9I AATT 3 cut(s) 511, 601, 820
SspMI CTAG 1 cut(s) 803
StyD4I CCNGG 3 cut(s) 416, 422, 440
TaaI ACNGT 3 cut(s) 79, 113, 719
TaiI ACGT 2 cut(s) 305, 644
TaqI TCGA 7 cut(s) 174, 402, 576, 582, 599, 645, 660
TasI AATT 3 cut(s) 511, 601, 820
TauI GCSGC 2 cut(s) 503, 552
TfiI GAWTC 5 cut(s) 176, 208, 393, 494, 627
Tru1I TTAA 3 cut(s) 93, 707, 755
Tru9I TTAA 3 cut(s) 93, 707, 755
TseFI GTSAC 1 cut(s) 538
TseI GCWGC 2 cut(s) 832, 835
Tsp45I GTSAC 1 cut(s) 538
TspDTI ATGAA 1 cut(s) 663
TspGWI ACGGA 3 cut(s) 241, 388, 426
Tth111I GACNNNGTC 1 cut(s) 424
Van91I CCANNNNNTGG 1 cut(s) 79
VpaK11BI GGWCC 2 cut(s) 420, 426
XapI RAATTY 2 cut(s) 511, 601
XcmI CCANNNNNNNNNTGG 1 cut(s) 47
XspI CTAG 1 cut(s) 803
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.