Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003927

Physical Location & Seq

Genomic Coordinates Forward (+)

14497560 .. 14500504

Gene Structure 2945 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G29540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGATTTCTCTCCTTAAAGCTCGCGAGAAGCTTCTCTCTCCTCTCGTCAGTTCCACTATCCGAAGACTCTCCTCTAGCCTCTCCTATTCTCGTGAAGATTCGAGGGATTCTGAAGTCTTAATACACCCGAGTGCTGTCGTCCACCCAAATGCTGTGATTGGCAAGGGAGTTTCAGTTGGTCCATACTGTACTATTGGCTCTTCAGTGAAGCTAGGCAATGGCTGCAAACTCTATCCTTCTAGCCATGTCTTTGGAAACACAGAGTTGGGGGAATCTTGTGTTCTCATGACTGGTGCTGTTGTTGGCGATGAGCTTCCTGGCTATACATTCATAGGATGCAATAACATTATCGGTCACCACGCCGTGGTTGGTGTTAAATGTCAAGACTTGAAGTACAAGCATGGAGATGAATGCTTTCTTTGCATTGGTAACAACAATGAAATCAGGGAGTTCTGCTCGATTCACAGGTCATCAAAGCCCAGTGATAAAACGGTTATTGGTGACAACAATCTAATCATGGGTTCTTGTCATATCGCCCATGATTGTAAGATTGGTGACCGCAACATATTTGCCAACAATACGCTTCTTGCTGGCCATGTGGTTGTAGAAGACAATACACACACAGCAGGAGCCTCGGTGGTCCACCAGTTCTGTCATATTGGCTCTTTTGCTTTCATTGGCGGTGGTTCTGTGGTCTCACAAGATGTTCCAAAGTACATGATGGTGGCTGGAGAAAGAGCCGAACTTCGCGGTTTGAATCTGGAGGGACTTAGACGAAATGGATTTACCATGTCAGAGATGAAGAGCCTAAGAGCAGCCTATCGTAAGATATTCATGTCTACTGAAACAGTCTCCTTAAGTTTTGAAGAGCGTCTCACGGAGCTGGACCAAGAGCTGTACAGTGTTCCTGCAGTATCGGCAATGTTGCAGTCAATCCGAGATTCTTTCACTGAAAGTCGCCGTGGGATATGCAAGTTCAGACAATGGCTCGATTCCACAACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006040 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008374 GO:0008780 GO:0009987 GO:0016740 GO:0016746 GO:0016747 GO:0019637 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901135 GO:2001289

KEGG Pathways

Metabolic & Signaling

ko00540 ko01100 ko01503 map00540 map01100 map01503

Pfam Domains

Protein Families

Acetyltransf_11 Hexapep

Protein Analysis

334

Amino Acids

36.46

Weight (kDa)

7.18

Isoelectric Point (pI)

51.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hexapep	PF00132	39 - 66	1.3e-06	Bacterial transferase hexapeptide (six repeats)
GMPPB_C	PF25087	42 - 124	9.3e-08	GMPPB C-terminal domain
Hexapep	PF00132	164 - 197	1.4e-09	Bacterial transferase hexapeptide (six repeats)
Acetyltransf_11	PF13720	235 - 324	2.4e-22	Udp N-acetylglucosamine O-acyltransferase; Domain 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003927)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29540 AT4G29540 AT4G29540 AT4G29540
fragaria_vesca	FvH4_1g22100 FvH4_1g22100 FvH4_1g22100 FvH4_1g22100 FvH4_1g22100 FvH4_1g22100
malus_domestica	MD02G1076200.v1.1 MD13G1273400.v1.1 MD15G1204600.v1.1 MD17G1181800.v1.1
prunus_persica	Prupe.7G212400_v2.0.a1 Prupe.7G212400_v2.0.a1 Prupe.7G212400_v2.0.a1 Prupe.7G212400_v2.0.a1 Prupe.7G212400_v2.0.a1 Prupe.7G212400_v2.0.a1
pyrus_communis	pycom02g06050 pycom15g18160
rosa_chinensis	RchiOBHm_Chr2g0093061
rosa_laevigata	RLG00000016364
rosa_multiflora	Rmu_sc0006865.1_g000004
rosa_roxburghii	Rroxscaffold_2G00148550
rosa_rugosa	Rorug02G0031900 Rorug02G0032000 Rorug02G0032100.1
rosa_samantha	Rh2AG077600 Rh2BG079000 Rh2CG081300 Rh2DG076500
rosa_wichuraiana	Rw2G006860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	364
AccI	GTMKAC	1 cut(s)	839
AccII	CGCG	2 cut(s)	24, 750
AciI	CCGC	3 cut(s)	559, 681, 750
AcoI	YGGCCR	1 cut(s)	592
AcuI	CTGAAG	2 cut(s)	132, 186
AdeI	CACNNNGTG	1 cut(s)	364
AfaI	GTAC	4 cut(s)	190, 395, 716, 899
AfiI	CCNNNNNNNGG	1 cut(s)	364
AflII	CTTAAG	1 cut(s)	856
AgsI	TTSAA	3 cut(s)	391, 757, 866
AjnI	CCWGG	1 cut(s)	316
AleI	CACNNNNGTG	1 cut(s)	129
AluBI	AGCT	6 cut(s)	20, 31, 211, 313, 883, 895
AluI	AGCT	6 cut(s)	20, 31, 211, 313, 883, 895
Alw26I	GTCTC	3 cut(s)	700, 856, 878
Ama87I	CYCGRG	1 cut(s)	127
AoxI	GGCC	1 cut(s)	592
ApeKI	GCWGC	2 cut(s)	222, 815
Asp700I	GAANNNNTTC	1 cut(s)	414
AspS9I	GGNCC	3 cut(s)	179, 640, 886
AsuHPI	GGTGA	3 cut(s)	347, 512, 566
AvaI	CYCGRG	1 cut(s)	127
AvaII	GGWCC	3 cut(s)	179, 640, 886
BalI	TGGCCA	1 cut(s)	594
BarI	GAAGNNNNNNTAC	2 cut(s)	105, 137
BauI	CACGAG	1 cut(s)	90
BbsI	GAAGAC	2 cut(s)	70, 615
BbvI	GCAGC	2 cut(s)	209, 827
BccI	CCATC	1 cut(s)	715
BceAI	ACGGC	2 cut(s)	347, 945
BcgI	CGANNNNNNTGC	2 cut(s)	615, 649
BciT130I	CCWGG	1 cut(s)	318
BcoDI	GTCTC	3 cut(s)	700, 856, 878
BfaI	CTAG	3 cut(s)	75, 212, 240
BfmI	CTRYAG	1 cut(s)	909
BfrI	CTTAAG	1 cut(s)	856
BisI	GCNGC	2 cut(s)	223, 816
BlsI	GCNGC	2 cut(s)	224, 817
Bme1390I	CCNGG	1 cut(s)	318
Bme18I	GGWCC	3 cut(s)	179, 640, 886
BmeT110I	CYCGRG	1 cut(s)	127
BmgT120I	GGNCC	3 cut(s)	179, 640, 886
BmiI	GGNNCC	1 cut(s)	631
BmrFI	CCNGG	1 cut(s)	318
BmrI	ACTGGG	1 cut(s)	474
BmsI	GCATC	1 cut(s)	326
BmuI	ACTGGG	1 cut(s)	474
BpiI	GAAGAC	2 cut(s)	70, 615
BplI	GAGNNNNNCTC	2 cut(s)	440, 472
BpmI	CTGGAG	2 cut(s)	750, 782
BsaI	GGTCTC	1 cut(s)	700
BsaJI	CCNNGG	3 cut(s)	363, 633, 961
BsaXI	ACNNNNNCTCC	4 cut(s)	159, 189, 621, 651
Bsc4I	CCNNNNNNNGG	1 cut(s)	364
Bse1I	ACTGG	3 cut(s)	295, 480, 646
Bse3DI	GCAATG	2 cut(s)	223, 927
BseBI	CCWGG	1 cut(s)	318
BseDI	CCNNGG	3 cut(s)	363, 633, 961
BseGI	GGATG	1 cut(s)	341
BseLI	CCNNNNNNNGG	1 cut(s)	364
BseMI	GCAATG	2 cut(s)	223, 927
BseNI	ACTGG	3 cut(s)	295, 480, 646
BseRI	GAGGAG	2 cut(s)	30, 61
BseXI	GCAGC	2 cut(s)	209, 827
Bsh1236I	CGCG	2 cut(s)	24, 750
BshFI	GGCC	1 cut(s)	594
BsiHKCI	CYCGRG	1 cut(s)	127
BslFI	GGGAC	1 cut(s)	780
BslI	CCNNNNNNNGG	1 cut(s)	364
BsmAI	GTCTC	3 cut(s)	700, 856, 878
BsmBI	CGTCTC	1 cut(s)	878
BsmFI	GGGAC	1 cut(s)	780
BsmI	GAATGC	1 cut(s)	416
BsnI	GGCC	1 cut(s)	594
Bso31I	GGTCTC	1 cut(s)	700
BsoBI	CYCGRG	1 cut(s)	127
Bsp1407I	TGTACA	1 cut(s)	897
Bsp68I	TCGCGA	1 cut(s)	24
BspACI	CCGC	3 cut(s)	559, 681, 750
BspANI	GGCC	1 cut(s)	594
BspFNI	CGCG	2 cut(s)	24, 750
BspHI	TCATGA	1 cut(s)	285
BspLI	GGNNCC	1 cut(s)	631
BspMAI	CTGCAG	1 cut(s)	913
BspQI	GCTCTTC	3 cut(s)	205, 797, 861
BspTI	CTTAAG	1 cut(s)	856
BspTNI	GGTCTC	1 cut(s)	700
BsrDI	GCAATG	2 cut(s)	223, 927
BsrGI	TGTACA	1 cut(s)	897
BsrI	ACTGG	3 cut(s)	295, 480, 646
BssECI	CCNNGG	3 cut(s)	363, 633, 961
BssSI	CACGAG	1 cut(s)	90
Bst2BI	CACGAG	1 cut(s)	90
Bst2UI	CCWGG	1 cut(s)	318
Bst4CI	ACNGT	4 cut(s)	188, 493, 850, 902
Bst6I	CTCTTC	3 cut(s)	205, 797, 861
BstAFI	CTTAAG	1 cut(s)	856
BstAPI	GCANNNNNTGC	1 cut(s)	222
BstAUI	TGTACA	1 cut(s)	897
BstC8I	GCNNGC	2 cut(s)	22, 592
BstDEI	CTNAG	3 cut(s)	770, 809, 1002
BstDSI	CCRYGG	2 cut(s)	363, 961
BstEII	GGTNACC	2 cut(s)	353, 554
BstF5I	GGATG	1 cut(s)	341
BstFNI	CGCG	2 cut(s)	24, 750
BstMAI	GTCTC	3 cut(s)	700, 856, 878
BstMWI	GCNNNNNNNGC	3 cut(s)	222, 420, 917
BstNI	CCWGG	1 cut(s)	318
BstPI	GGTNACC	2 cut(s)	353, 554
BstSCI	CCNGG	1 cut(s)	316
BstSFI	CTRYAG	1 cut(s)	909
BstUI	CGCG	2 cut(s)	24, 750
BstV1I	GCAGC	2 cut(s)	209, 827
BstV2I	GAAGAC	2 cut(s)	70, 615
BstXI	CCANNNNNNTGG	1 cut(s)	251
BsuRI	GGCC	1 cut(s)	594
BtgI	CCRYGG	2 cut(s)	363, 961
BtgZI	GCGATG	1 cut(s)	321
BtsCI	GGATG	1 cut(s)	341
BtsIMutI	CAGTG	4 cut(s)	210, 487, 907, 948
BtuMI	TCGCGA	1 cut(s)	24
Cac8I	GCNNGC	2 cut(s)	22, 592
CciI	TCATGA	1 cut(s)	285
Cfr13I	GGNCC	3 cut(s)	179, 640, 886
CseI	GACGC	1 cut(s)	860
Csp6I	GTAC	4 cut(s)	189, 394, 715, 898
CviAII	CATG	9 cut(s)	245, 286, 401, 517, 539, 596, 718, 790, 835
CviQI	GTAC	4 cut(s)	189, 394, 715, 898
DdeI	CTNAG	3 cut(s)	770, 809, 1002
DraIII	CACNNNGTG	1 cut(s)	364
EaeI	YGGCCR	1 cut(s)	592
Eam1104I	CTCTTC	3 cut(s)	205, 797, 861
EarI	CTCTTC	3 cut(s)	205, 797, 861
Eco31I	GGTCTC	1 cut(s)	700
Eco47I	GGWCC	3 cut(s)	179, 640, 886
Eco57I	CTGAAG	2 cut(s)	132, 186
Eco88I	CYCGRG	1 cut(s)	127
Eco91I	GGTNACC	2 cut(s)	353, 554
EcoO65I	GGTNACC	2 cut(s)	353, 554
EcoRII	CCWGG	1 cut(s)	316
Esp3I	CGTCTC	1 cut(s)	878
FaeI	CATG	9 cut(s)	248, 289, 404, 520, 542, 599, 721, 793, 838
FaqI	GGGAC	1 cut(s)	780
FatI	CATG	9 cut(s)	244, 285, 400, 516, 538, 595, 717, 789, 834
FblI	GTMKAC	1 cut(s)	839
Fnu4HI	GCNGC	2 cut(s)	223, 816
FokI	GGATG	1 cut(s)	348
Fsp4HI	GCNGC	2 cut(s)	223, 816
FspBI	CTAG	3 cut(s)	75, 212, 240
GluI	GCNGC	2 cut(s)	223, 816
GsuI	CTGGAG	2 cut(s)	750, 782
HaeIII	GGCC	1 cut(s)	594
HgaI	GACGC	1 cut(s)	860
Hin1II	CATG	9 cut(s)	248, 289, 404, 520, 542, 599, 721, 793, 838
HindIII	AAGCTT	1 cut(s)	29
HinfI	GANTC	8 cut(s)	66, 98, 107, 272, 460, 757, 941, 992
HphI	GGTGA	3 cut(s)	347, 512, 566
Hpy166II	GTNNAC	3 cut(s)	142, 643, 840
Hpy188I	TCNGA	5 cut(s)	62, 112, 796, 938, 980
Hpy188III	TCNNGA	5 cut(s)	23, 92, 286, 383, 761
Hpy8I	GTNNAC	3 cut(s)	142, 643, 840
HpyAV	CCTTC	1 cut(s)	246
HpyCH4III	ACNGT	4 cut(s)	188, 493, 850, 902
HpyCH4V	TGCA	6 cut(s)	225, 339, 423, 911, 928, 972
HpyF10VI	GCNNNNNNNGC	3 cut(s)	222, 420, 917
HpyF3I	CTNAG	3 cut(s)	770, 809, 1002
Hsp92II	CATG	9 cut(s)	248, 289, 404, 520, 542, 599, 721, 793, 838
LguI	GCTCTTC	3 cut(s)	205, 797, 861
LmnI	GCTCC	2 cut(s)	629, 880
Lsp1109I	GCAGC	2 cut(s)	209, 827
LweI	GCATC	1 cut(s)	326
MaeI	CTAG	3 cut(s)	75, 212, 240
MaeIII	GTNAC	4 cut(s)	353, 428, 500, 554
MboII	GAAGA	6 cut(s)	75, 107, 192, 620, 814, 878
MlsI	TGGCCA	1 cut(s)	594
MluNI	TGGCCA	1 cut(s)	594
MlyI	GAGTC	1 cut(s)	60
MnlI	CCTC	6 cut(s)	51, 82, 89, 96, 643, 757
Mox20I	TGGCCA	1 cut(s)	594
MroXI	GAANNNNTTC	1 cut(s)	414
MscI	TGGCCA	1 cut(s)	594
MseI	TTAA	4 cut(s)	15, 119, 375, 857
MslI	CAYNNNNRTG	4 cut(s)	129, 147, 405, 722
Msp20I	TGGCCA	1 cut(s)	594
MspCI	CTTAAG	1 cut(s)	856
MspR9I	CCNGG	1 cut(s)	318
Mva1269I	GAATGC	1 cut(s)	416
MvaI	CCWGG	1 cut(s)	318
MvnI	CGCG	2 cut(s)	24, 750
MwoI	GCNNNNNNNGC	3 cut(s)	222, 420, 917
NlaIII	CATG	9 cut(s)	248, 289, 404, 520, 542, 599, 721, 793, 838
NlaIV	GGNNCC	1 cut(s)	631
NmuCI	GTSAC	3 cut(s)	353, 500, 554
NruI	TCGCGA	1 cut(s)	24
OliI	CACNNNNGTG	1 cut(s)	129
PagI	TCATGA	1 cut(s)	285
PciSI	GCTCTTC	3 cut(s)	205, 797, 861
PctI	GAATGC	1 cut(s)	416
PdmI	GAANNNNTTC	1 cut(s)	414
PfeI	GAWTC	7 cut(s)	98, 107, 272, 460, 757, 941, 992
PflMI	CCANNNNNTGG	1 cut(s)	364
PkrI	GCNGC	2 cut(s)	224, 817
PleI	GAGTC	1 cut(s)	60
PpsI	GAGTC	1 cut(s)	60
Psp6I	CCWGG	1 cut(s)	316
PspEI	GGTNACC	2 cut(s)	353, 554
PspGI	CCWGG	1 cut(s)	316
PspN4I	GGNNCC	1 cut(s)	631
PspPI	GGNCC	3 cut(s)	179, 640, 886
PstI	CTGCAG	1 cut(s)	913
RruI	TCGCGA	1 cut(s)	24
RsaI	GTAC	4 cut(s)	190, 395, 716, 899
RsaNI	GTAC	4 cut(s)	189, 394, 715, 898
RseI	CAYNNNNRTG	4 cut(s)	129, 147, 405, 722
SapI	GCTCTTC	3 cut(s)	205, 797, 861
SaqAI	TTAA	4 cut(s)	15, 119, 375, 857
SatI	GCNGC	2 cut(s)	223, 816
Sau96I	GGNCC	3 cut(s)	179, 640, 886
SchI	GAGTC	1 cut(s)	60
ScrFI	CCNGG	1 cut(s)	318
SetI	ASST	7 cut(s)	22, 33, 213, 315, 470, 885, 897
SfaNI	GCATC	1 cut(s)	326
SfcI	CTRYAG	1 cut(s)	909
SinI	GGWCC	3 cut(s)	179, 640, 886
SmiMI	CAYNNNNRTG	4 cut(s)	129, 147, 405, 722
SmlI	CTYRAG	1 cut(s)	856
SmoI	CTYRAG	1 cut(s)	856
SsiI	CCGC	3 cut(s)	559, 681, 750
SspMI	CTAG	3 cut(s)	75, 212, 240
StyD4I	CCNGG	1 cut(s)	316
TaaI	ACNGT	4 cut(s)	188, 493, 850, 902
TaqI	TCGA	3 cut(s)	101, 458, 990
TaqII	GACCGA	1 cut(s)	341
TatI	WGTACW	4 cut(s)	188, 393, 714, 897
TfiI	GAWTC	7 cut(s)	98, 107, 272, 460, 757, 941, 992
Tru1I	TTAA	4 cut(s)	15, 119, 375, 857
Tru9I	TTAA	4 cut(s)	15, 119, 375, 857
TscAI	CASTG	4 cut(s)	210, 487, 907, 955
TseFI	GTSAC	3 cut(s)	353, 500, 554
TseI	GCWGC	2 cut(s)	222, 815
Tsp45I	GTSAC	3 cut(s)	353, 500, 554
TspDTI	ATGAA	6 cut(s)	319, 423, 453, 664, 815, 823
TspGWI	ACGGA	1 cut(s)	893
TspRI	CASTG	4 cut(s)	210, 487, 907, 955
Van91I	CCANNNNNTGG	1 cut(s)	364
Vha464I	CTTAAG	1 cut(s)	856
VpaK11BI	GGWCC	3 cut(s)	179, 640, 886
XcmI	CCANNNNNNNNNTGG	1 cut(s)	365
XmiI	GTMKAC	1 cut(s)	839
XmnI	GAANNNNTTC	1 cut(s)	414
XspI	CTAG	3 cut(s)	75, 212, 240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.