Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0003927

Physical Location & Seq

Genomic Coordinates Forward (+)

6032597 .. 6034751

Gene Structure 2155 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1076200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGCGTGCGTTGGTAAAAGTTGGCGGCAAACGCTTAAGCTCTGCGCTGAGCAGCCTCAGCTCGCCGTCCCTACTCCGCTTATTCAGCACCCTTAACTCCGGCTCCGTTCATCCCACGGCAATCGTTCACCCCAATGCCGTTTTGGGTCAGGGTGTTTCAATTGGGCCCTTTTGTACTGTTGGGTCGTCGGCGAAGGTTGGCAATGGCTGCAGATTGTACCCCGGAAGCCATGTTTTTGGAAATACAGAAGTTGGGGAGCGTTGTGTTTTGATGACTGGTGCCATTGTTAGAGATGATCTTCCGGGGCGTACCGTGCTCGGATGTGATAATGTTATTGGGCACCATGCTGTGGTTGGTGTCAAATGCCAAGACTTGAAGTACAAGTCAGGGGATGAATGTTTCCTTGATGTTGGAGACAACAATGACATCAGAGAGTGTACTTCAATCCACCGGTCTTCGAAGTCAACTGATACAACTGCTATTGGGAATAACAATCTTATCATGGGATCTTGTCATATTGCCCACGATTGCAAGATCGGAAACAACATCATTTTTGCAAATAATACATTGCTAGCAGGCTTTGTTGAGGTGGAAGATTATGCTCACACTGCAGGGGCTGTTGTAGTTCATCAATTCTGCCATGTTGGCTCTTTCTCATTCATTGGCGGTGGCTCTGTGATTACACAGGATGTTCCAAAGTATATGATGGTTGCAGGAGAAAGAGCTGCGCTTCGCGGTTTAAATCTTGAGGGTCTACGGCGTAATGGATTCACAGCAGCAGAGATGAGAAGTCTGAGAACAGCTTACCAAAAGATATTCATGCCTGCTGATGAAAATTTTGGGGGTTTTGAAGAACGTCTTTCTAATGTGGAGCTTCATGCTGAATTGGCTCATATACCTGCAGTTCGTTCCATGGTGCAGTCTATCTGCGACTCTTTTGAAGGAAAACGACGTGGAATATGTAAATTCAGACATTGGAATGGCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006040 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008374 GO:0008780 GO:0009987 GO:0016740 GO:0016746 GO:0016747 GO:0019637 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901135 GO:2001289

KEGG Pathways

Metabolic & Signaling

ko00540 ko01100 ko01503 map00540 map01100 map01503

Pfam Domains

Protein Families

Acetyltransf_11 Hexapep

Protein Analysis

330

Amino Acids

35.27

Weight (kDa)

8.25

Isoelectric Point (pI)

41.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GMPPB_C	PF25087	38 - 95	7.7e-07	GMPPB C-terminal domain
Hexapep	PF00132	160 - 192	1.6e-07	Bacterial transferase hexapeptide (six repeats)
Acetyltransf_11	PF13720	230 - 321	3.2e-19	Udp N-acetylglucosamine O-acyltransferase; Domain 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003927)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29540 AT4G29540 AT4G29540 AT4G29540
fragaria_vesca	FvH4_1g22100 FvH4_1g22100 FvH4_1g22100 FvH4_1g22100 FvH4_1g22100 FvH4_1g22100
malus_domestica	MD02G1076200.v1.1 MD13G1273400.v1.1 MD15G1204600.v1.1 MD17G1181800.v1.1
prunus_persica	Prupe.7G212400_v2.0.a1 Prupe.7G212400_v2.0.a1 Prupe.7G212400_v2.0.a1 Prupe.7G212400_v2.0.a1 Prupe.7G212400_v2.0.a1 Prupe.7G212400_v2.0.a1
pyrus_communis	pycom02g06050 pycom15g18160
rosa_chinensis	RchiOBHm_Chr2g0093061
rosa_laevigata	RLG00000016364
rosa_multiflora	Rmu_sc0006865.1_g000004
rosa_roxburghii	Rroxscaffold_2G00148550
rosa_rugosa	Rorug02G0031900 Rorug02G0032000 Rorug02G0032100.1
rosa_samantha	Rh2AG077600 Rh2BG079000 Rh2CG081300 Rh2DG076500
rosa_wichuraiana	Rw2G006860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	907
AccB1I	GGYRCC	2 cut(s)	278, 339
AccB7I	CCANNNNNTGG	1 cut(s)	349
AccI	GTMKAC	1 cut(s)	754
AccII	CGCG	1 cut(s)	735
AciI	CCGC	4 cut(s)	24, 76, 666, 735
AclWI	GGATC	1 cut(s)	514
AcsI	RAATTY	2 cut(s)	835, 965
AfaI	GTAC	5 cut(s)	175, 218, 310, 380, 439
AfiI	CCNNNNNNNGG	1 cut(s)	349
AflII	CTTAAG	1 cut(s)	34
AgeI	ACCGGT	1 cut(s)	450
AgsI	TTSAA	5 cut(s)	159, 376, 444, 851, 941
AjiI	CACGTC	1 cut(s)	953
AluBI	AGCT	5 cut(s)	39, 60, 725, 803, 874
AluI	AGCT	5 cut(s)	39, 60, 725, 803, 874
Alw21I	GWGCWC	1 cut(s)	318
Alw26I	GTCTC	1 cut(s)	408
AlwI	GGATC	1 cut(s)	514
AlwNI	CAGNNNCTG	1 cut(s)	617
AoxI	GGCC	1 cut(s)	164
ApaI	GGGCCC	1 cut(s)	168
ApeKI	GCWGC	4 cut(s)	51, 207, 725, 776
ApoI	RAATTY	2 cut(s)	835, 965
AsiGI	ACCGGT	1 cut(s)	450
AspLEI	GCGC	2 cut(s)	46, 730
AspS9I	GGNCC	2 cut(s)	164, 165
AsuC2I	CCSGG	2 cut(s)	222, 303
AsuHPI	GGTGA	1 cut(s)	119
AsuII	TTCGAA	1 cut(s)	458
AsuNHI	GCTAGC	1 cut(s)	571
BaeGI	GKGCMC	2 cut(s)	168, 342
BanI	GGYRCC	2 cut(s)	278, 339
BanII	GRGCYC	1 cut(s)	168
BbsI	GAAGAC	1 cut(s)	447
Bbv12I	GWGCWC	1 cut(s)	318
BbvCI	CCTCAGC	1 cut(s)	56
BbvI	GCAGC	4 cut(s)	63, 194, 712, 788
BccI	CCATC	1 cut(s)	700
BceAI	ACGGC	4 cut(s)	49, 122, 132, 773
BcnI	CCSGG	2 cut(s)	222, 303
BcoDI	GTCTC	1 cut(s)	408
BfaI	CTAG	1 cut(s)	572
BfmI	CTRYAG	3 cut(s)	208, 609, 900
BfrI	CTTAAG	1 cut(s)	34
BfuAI	ACCTGC	1 cut(s)	907
BglI	GCCNNNNNGGC	1 cut(s)	645
BisI	GCNGC	5 cut(s)	25, 52, 208, 726, 777
BlpI	GCTNAGC	1 cut(s)	47
BlsI	GCNGC	5 cut(s)	26, 53, 209, 727, 778
Bme1390I	CCNGG	2 cut(s)	222, 303
BmgBI	CACGTC	1 cut(s)	953
BmgT120I	GGNCC	2 cut(s)	164, 165
BmiI	GGNNCC	4 cut(s)	103, 166, 280, 341
BmrFI	CCNGG	2 cut(s)	222, 303
BmtI	GCTAGC	1 cut(s)	575
BpiI	GAAGAC	1 cut(s)	447
Bpu10I	CCTNAGC	1 cut(s)	56
Bpu1102I	GCTNAGC	1 cut(s)	47
Bpu14I	TTCGAA	1 cut(s)	458
BpuEI	CTTGAG	1 cut(s)	767
BpuMI	CCSGG	2 cut(s)	222, 303
BsaJI	CCNNGG	4 cut(s)	114, 220, 302, 912
BsaWI	WCCGGW	1 cut(s)	450
BsaXI	ACNNNNNCTCC	2 cut(s)	86, 116
Bsc4I	CCNNNNNNNGG	1 cut(s)	349
Bse118I	RCCGGY	1 cut(s)	450
Bse1I	ACTGG	1 cut(s)	280
Bse3DI	GCAATG	2 cut(s)	208, 566
BseDI	CCNNGG	4 cut(s)	114, 220, 302, 912
BseGI	GGATG	4 cut(s)	109, 326, 397, 694
BseLI	CCNNNNNNNGG	1 cut(s)	349
BseMI	GCAATG	2 cut(s)	208, 566
BseMII	CTCAG	3 cut(s)	38, 70, 785
BseNI	ACTGG	1 cut(s)	280
BseSI	GKGCMC	2 cut(s)	168, 342
BseXI	GCAGC	4 cut(s)	63, 194, 712, 788
BsgI	GTGCAG	1 cut(s)	938
Bsh1236I	CGCG	1 cut(s)	735
BshFI	GGCC	1 cut(s)	166
BshNI	GGYRCC	2 cut(s)	278, 339
BshTI	ACCGGT	1 cut(s)	450
BsiHKAI	GWGCWC	1 cut(s)	318
BsiSI	CCGG	4 cut(s)	99, 222, 302, 451
BslFI	GGGAC	1 cut(s)	52
BslI	CCNNNNNNNGG	1 cut(s)	349
BsmAI	GTCTC	1 cut(s)	408
BsmFI	GGGAC	1 cut(s)	52
BsnI	GGCC	1 cut(s)	166
Bsp119I	TTCGAA	1 cut(s)	458
Bsp120I	GGGCCC	1 cut(s)	164
Bsp1286I	GDGCHC	3 cut(s)	168, 318, 342
Bsp143I	GATC	3 cut(s)	295, 506, 534
Bsp1720I	GCTNAGC	1 cut(s)	47
Bsp19I	CCATGG	1 cut(s)	912
BspACI	CCGC	4 cut(s)	24, 76, 666, 735
BspANI	GGCC	1 cut(s)	166
BspCNI	CTCAG	3 cut(s)	39, 69, 786
BspFNI	CGCG	1 cut(s)	735
BspLI	GGNNCC	4 cut(s)	103, 166, 280, 341
BspMAI	CTGCAG	3 cut(s)	212, 613, 904
BspMI	ACCTGC	1 cut(s)	907
BspOI	GCTAGC	1 cut(s)	575
BspPI	GGATC	1 cut(s)	514
BspT104I	TTCGAA	1 cut(s)	458
BspT107I	GGYRCC	2 cut(s)	278, 339
BspTI	CTTAAG	1 cut(s)	34
BsrDI	GCAATG	2 cut(s)	208, 566
BsrFI	RCCGGY	1 cut(s)	450
BsrI	ACTGG	1 cut(s)	280
BssAI	RCCGGY	1 cut(s)	450
BssECI	CCNNGG	4 cut(s)	114, 220, 302, 912
BssMI	GATC	3 cut(s)	295, 506, 534
BssT1I	CCWWGG	1 cut(s)	912
Bst4CI	ACNGT	2 cut(s)	178, 313
BstAFI	CTTAAG	1 cut(s)	34
BstAPI	GCANNNNNTGC	1 cut(s)	207
BstBI	TTCGAA	1 cut(s)	458
BstC8I	GCNNGC	5 cut(s)	6, 62, 573, 577, 825
BstDEI	CTNAG	3 cut(s)	47, 56, 794
BstDSI	CCRYGG	2 cut(s)	114, 912
BstF5I	GGATG	4 cut(s)	109, 326, 397, 694
BstFNI	CGCG	1 cut(s)	735
BstHHI	GCGC	2 cut(s)	46, 730
BstKTI	GATC	3 cut(s)	298, 509, 537
BstMAI	GTCTC	1 cut(s)	408
BstMBI	GATC	3 cut(s)	295, 506, 534
BstMWI	GCNNNNNNNGC	8 cut(s)	30, 57, 84, 207, 313, 608, 645, 887
BstSCI	CCNGG	2 cut(s)	220, 301
BstSFI	CTRYAG	3 cut(s)	208, 609, 900
BstSLI	GKGCMC	2 cut(s)	168, 342
BstUI	CGCG	1 cut(s)	735
BstV1I	GCAGC	4 cut(s)	63, 194, 712, 788
BstV2I	GAAGAC	1 cut(s)	447
BstX2I	RGATCY	1 cut(s)	506
BstXI	CCANNNNNNTGG	1 cut(s)	236
BstYI	RGATCY	1 cut(s)	506
BsuRI	GGCC	1 cut(s)	166
BtgI	CCRYGG	2 cut(s)	114, 912
BtrI	CACGTC	1 cut(s)	953
BtsCI	GGATG	4 cut(s)	109, 326, 397, 694
BtsI	GCAGTG	1 cut(s)	606
BtsIMutI	CAGTG	1 cut(s)	606
BveI	ACCTGC	1 cut(s)	907
Cac8I	GCNNGC	5 cut(s)	6, 62, 573, 577, 825
CaiI	CAGNNNCTG	1 cut(s)	617
CfoI	GCGC	2 cut(s)	46, 730
Cfr10I	RCCGGY	1 cut(s)	450
Cfr13I	GGNCC	2 cut(s)	164, 165
Csp6I	GTAC	5 cut(s)	174, 217, 309, 379, 438
CspAI	ACCGGT	1 cut(s)	450
CviAII	CATG	7 cut(s)	230, 344, 502, 641, 820, 878, 913
CviQI	GTAC	5 cut(s)	174, 217, 309, 379, 438
DdeI	CTNAG	3 cut(s)	47, 56, 794
DpnI	GATC	3 cut(s)	297, 508, 536
DpnII	GATC	3 cut(s)	295, 506, 534
DraI	TTTAAA	1 cut(s)	741
Eco130I	CCWWGG	1 cut(s)	912
Eco24I	GRGCYC	1 cut(s)	168
EcoO109I	RGGNCCY	1 cut(s)	165
EcoT14I	CCWWGG	1 cut(s)	912
EcoT38I	GRGCYC	1 cut(s)	168
ErhI	CCWWGG	1 cut(s)	912
FaeI	CATG	7 cut(s)	233, 347, 505, 644, 823, 881, 916
FalI	AAGNNNNNCTT	2 cut(s)	843, 875
FaqI	GGGAC	1 cut(s)	52
FatI	CATG	7 cut(s)	229, 343, 501, 640, 819, 877, 912
FblI	GTMKAC	1 cut(s)	754
Fnu4HI	GCNGC	5 cut(s)	25, 52, 208, 726, 777
FokI	GGATG	4 cut(s)	96, 333, 404, 701
FriOI	GRGCYC	1 cut(s)	168
Fsp4HI	GCNGC	5 cut(s)	25, 52, 208, 726, 777
FspBI	CTAG	1 cut(s)	572
GlaI	GCGC	2 cut(s)	45, 729
GluI	GCNGC	5 cut(s)	25, 52, 208, 726, 777
HaeIII	GGCC	1 cut(s)	166
HapII	CCGG	4 cut(s)	99, 222, 302, 451
HhaI	GCGC	2 cut(s)	46, 730
Hin1II	CATG	7 cut(s)	233, 347, 505, 644, 823, 881, 916
Hin6I	GCGC	2 cut(s)	44, 728
HinP1I	GCGC	2 cut(s)	44, 728
HincII	GTYRAC	1 cut(s)	465
HindII	GTYRAC	1 cut(s)	465
HinfI	GANTC	2 cut(s)	768, 932
HpaII	CCGG	4 cut(s)	99, 222, 302, 451
HphI	GGTGA	1 cut(s)	119
Hpy166II	GTNNAC	4 cut(s)	127, 438, 465, 755
Hpy188I	TCNGA	5 cut(s)	320, 431, 539, 795, 971
Hpy188III	TCNNGA	1 cut(s)	746
Hpy8I	GTNNAC	4 cut(s)	127, 438, 465, 755
Hpy99I	CGWCG	2 cut(s)	190, 954
HpyAV	CCTTC	2 cut(s)	187, 935
HpyCH4III	ACNGT	2 cut(s)	178, 313
HpyCH4IV	ACGT	2 cut(s)	856, 952
HpyCH4V	TGCA	7 cut(s)	210, 531, 557, 611, 713, 902, 919
HpyF10VI	GCNNNNNNNGC	8 cut(s)	30, 57, 84, 207, 313, 608, 645, 887
HpyF3I	CTNAG	3 cut(s)	47, 56, 794
HpySE526I	ACGT	2 cut(s)	856, 952
Hsp92II	CATG	7 cut(s)	233, 347, 505, 644, 823, 881, 916
HspAI	GCGC	2 cut(s)	44, 728
Kzo9I	GATC	3 cut(s)	295, 506, 534
LmnI	GCTCC	3 cut(s)	107, 256, 871
Lsp1109I	GCAGC	4 cut(s)	63, 194, 712, 788
MaeI	CTAG	1 cut(s)	572
MaeII	ACGT	2 cut(s)	856, 952
MalI	GATC	3 cut(s)	297, 508, 536
MboI	GATC	3 cut(s)	295, 506, 534
MboII	GAAGA	4 cut(s)	290, 447, 605, 863
MfeI	CAATTG	1 cut(s)	159
MflI	RGATCY	1 cut(s)	506
MhlI	GDGCHC	3 cut(s)	168, 318, 342
MluCI	AATT	5 cut(s)	159, 632, 835, 884, 965
MlyI	GAGTC	1 cut(s)	926
MmeI	TCCRAC	1 cut(s)	391
MnlI	CCTC	3 cut(s)	65, 580, 742
MseI	TTAA	4 cut(s)	35, 93, 740, 988
MslI	CAYNNNNRTG	2 cut(s)	132, 978
MspCI	CTTAAG	1 cut(s)	34
MspI	CCGG	4 cut(s)	99, 222, 302, 451
MspR9I	CCNGG	2 cut(s)	222, 303
MunI	CAATTG	1 cut(s)	159
MvnI	CGCG	1 cut(s)	735
MwoI	GCNNNNNNNGC	8 cut(s)	30, 57, 84, 207, 313, 608, 645, 887
NciI	CCSGG	2 cut(s)	222, 303
NcoI	CCATGG	1 cut(s)	912
NdeII	GATC	3 cut(s)	295, 506, 534
NheI	GCTAGC	1 cut(s)	571
NlaIII	CATG	7 cut(s)	233, 347, 505, 644, 823, 881, 916
NlaIV	GGNNCC	4 cut(s)	103, 166, 280, 341
NspV	TTCGAA	1 cut(s)	458
PfeI	GAWTC	1 cut(s)	768
PflMI	CCANNNNNTGG	1 cut(s)	349
PinAI	ACCGGT	1 cut(s)	450
PkrI	GCNGC	5 cut(s)	26, 53, 209, 727, 778
PleI	GAGTC	1 cut(s)	926
PpsI	GAGTC	1 cut(s)	926
PspN4I	GGNNCC	4 cut(s)	103, 166, 280, 341
PspOMI	GGGCCC	1 cut(s)	164
PspPI	GGNCC	2 cut(s)	164, 165
PstI	CTGCAG	3 cut(s)	212, 613, 904
PstNI	CAGNNNCTG	1 cut(s)	617
PsuI	RGATCY	1 cut(s)	506
RsaI	GTAC	5 cut(s)	175, 218, 310, 380, 439
RsaNI	GTAC	5 cut(s)	174, 217, 309, 379, 438
RseI	CAYNNNNRTG	2 cut(s)	132, 978
SaqAI	TTAA	4 cut(s)	35, 93, 740, 988
SatI	GCNGC	5 cut(s)	25, 52, 208, 726, 777
Sau3AI	GATC	3 cut(s)	295, 506, 534
Sau96I	GGNCC	2 cut(s)	164, 165
SchI	GAGTC	1 cut(s)	926
ScrFI	CCNGG	2 cut(s)	222, 303
SduI	GDGCHC	3 cut(s)	168, 318, 342
SfcI	CTRYAG	3 cut(s)	208, 609, 900
SfuI	TTCGAA	1 cut(s)	458
SmiMI	CAYNNNNRTG	2 cut(s)	132, 978
SmlI	CTYRAG	2 cut(s)	34, 746
SmoI	CTYRAG	2 cut(s)	34, 746
Sse9I	AATT	5 cut(s)	159, 632, 835, 884, 965
SsiI	CCGC	4 cut(s)	24, 76, 666, 735
SspMI	CTAG	1 cut(s)	572
StyD4I	CCNGG	2 cut(s)	220, 301
StyI	CCWWGG	1 cut(s)	912
TaaI	ACNGT	2 cut(s)	178, 313
TaiI	ACGT	2 cut(s)	859, 955
TaqI	TCGA	1 cut(s)	458
TasI	AATT	5 cut(s)	159, 632, 835, 884, 965
TatI	WGTACW	3 cut(s)	173, 378, 437
TauI	GCSGC	1 cut(s)	27
TfiI	GAWTC	1 cut(s)	768
Tru1I	TTAA	4 cut(s)	35, 93, 740, 988
Tru9I	TTAA	4 cut(s)	35, 93, 740, 988
TscAI	CASTG	1 cut(s)	613
TseI	GCWGC	4 cut(s)	51, 207, 725, 776
TspDTI	ATGAA	7 cut(s)	98, 408, 617, 649, 808, 846, 866
TspGWI	ACGGA	1 cut(s)	94
TspRI	CASTG	1 cut(s)	613
Van91I	CCANNNNNTGG	1 cut(s)	349
Vha464I	CTTAAG	1 cut(s)	34
XapI	RAATTY	2 cut(s)	835, 965
XcmI	CCANNNNNNNNNTGG	2 cut(s)	139, 350
XmiI	GTMKAC	1 cut(s)	754
XspI	CTAG	1 cut(s)	572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.