Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0003927

Physical Location & Seq

Genomic Coordinates Reverse (-)

6636111 .. 6638597

Gene Structure 2487 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G006860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGTGTGCACTATTCGAACTTAGCACCAAGCGCTTATTCACTGCCCTGAACAACCAGAGCTCTCTATCTCTGCGACGACGCTTCTTCTGCAGCACAGTTCCCGATGGCTTCATTCACCCCTCTGCGATCGTTCACCCCAATGCCGTTCTCGGCCAGGGTGTTTCAATTGGGCCCTTTTGTACTGTTGGGTCGTCGGTGAAGCTCGGAAATGGCTGCCGGTTACATCCCGGAAGCCATATTTTTGGGAATACTGAAGTTGGGGAGCGTTGTGTTTTGATGACTGGTGCCATTGTTGGTGATGATCTTCCGGGGCGTACTGTGCTGGGTTGCAATAATGTTATTGGATATCATGCTGTGGTTGGTGTTAAATGCCAGGACATGAAATACAAGTCAGGGGATGAATGCTTTCTTGATGTTGGGGACAACAATGAGATCAGAGAGCATGCTTCAATCCATCGATCTTCGAAGTCAAGTGATACTACAGTTATTGGGAATAACAATCTTATCATGGGTTCTTGCCATATTGCCCATGATTGCAAGGTTGGGAACAACGTTATTTTTGCGAATAATACCCTTCTGGCAGGCCATGTTGTGGTGGAAGATTATGCTCACACTGCAGGGGCTGTTGTTGTTCATCAATTCTGTCATGTTGGTTCTTTCGCTTTCATTGGCGGTGGCTCTGTGATTGCACAGGATGTTCCAAAGTACATGATGGTTGCAGGAGAAAGAGCTCAGCTCCGTGGTTTGAATCTTGAGGGTCTACGGCGTCATGGATTCACAGTGGCAGAGATCAGAAGCCTTAGAACAGCTTACCAAAGGATATTCATGCCTGCTGATGCAAATTCCAGTGGTTTTGAAGCACGTCTTGCTGAAGTGGAGCTCCATGATAAATTGGCTCATATACCTGCTGTGTGCTCCATGGTGCAGTCTATCCGTGATTCTTTGAAAGAAAAAAGACGTGGACTATGCAAATTCAGACATTGGAATAGCTCTAAAAGCACTAGTGACCTAACTGCTATTGCTTTTACGAAAACTGATGATGTGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006040 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008374 GO:0008780 GO:0009987 GO:0016740 GO:0016746 GO:0016747 GO:0019637 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901135 GO:2001289

KEGG Pathways

Metabolic & Signaling

ko00540 ko01100 ko01503 map00540 map01100 map01503

Pfam Domains

Protein Families

Acetyltransf_11 Hexapep

Protein Analysis

349

Amino Acids

37.81

Weight (kDa)

8.4

Isoelectric Point (pI)

40.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GMPPB_C	PF25087	39 - 101	3e-08	GMPPB C-terminal domain
Hexapep	PF00132	161 - 194	2e-09	Bacterial transferase hexapeptide (six repeats)
Acetyltransf_11	PF13720	232 - 323	3.6e-19	Udp N-acetylglucosamine O-acyltransferase; Domain 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003927)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29540 AT4G29540 AT4G29540 AT4G29540
fragaria_vesca	FvH4_1g22100 FvH4_1g22100 FvH4_1g22100 FvH4_1g22100 FvH4_1g22100 FvH4_1g22100
malus_domestica	MD02G1076200.v1.1 MD13G1273400.v1.1 MD15G1204600.v1.1 MD17G1181800.v1.1
prunus_persica	Prupe.7G212400_v2.0.a1 Prupe.7G212400_v2.0.a1 Prupe.7G212400_v2.0.a1 Prupe.7G212400_v2.0.a1 Prupe.7G212400_v2.0.a1 Prupe.7G212400_v2.0.a1
pyrus_communis	pycom02g06050 pycom15g18160
rosa_chinensis	RchiOBHm_Chr2g0093061
rosa_laevigata	RLG00000016364
rosa_multiflora	Rmu_sc0006865.1_g000004
rosa_roxburghii	Rroxscaffold_2G00148550
rosa_rugosa	Rorug02G0031900 Rorug02G0032000 Rorug02G0032100.1
rosa_samantha	Rh2AG077600 Rh2BG079000 Rh2CG081300 Rh2DG076500
rosa_wichuraiana	Rw2G006860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	913
AccB1I	GGYRCC	1 cut(s)	284
AccB7I	CCANNNNNTGG	1 cut(s)	592
AccI	GTMKAC	1 cut(s)	760
AciI	CCGC	1 cut(s)	672
AclI	AACGTT	1 cut(s)	552
AcoI	YGGCCR	1 cut(s)	151
AcsI	RAATTY	2 cut(s)	841, 971
AcuI	CTGAAG	2 cut(s)	273, 891
AcyI	GRCGYC	1 cut(s)	766
AfaI	GTAC	3 cut(s)	181, 316, 707
AfeI	AGCGCT	1 cut(s)	32
AfiI	CCNNNNNNNGG	1 cut(s)	592
AgsI	TTSAA	5 cut(s)	165, 450, 748, 857, 946
AhlI	ACTAGT	1 cut(s)	1001
AjiI	CACGTC	2 cut(s)	863, 959
AjnI	CCWGG	2 cut(s)	153, 372
AjuI	GAANNNNNNNTTGG	2 cut(s)	20, 52
AluBI	AGCT	7 cut(s)	60, 202, 731, 736, 809, 880, 990
AluI	AGCT	7 cut(s)	60, 202, 731, 736, 809, 880, 990
Alw21I	GWGCWC	5 cut(s)	10, 62, 733, 882, 917
Alw44I	GTGCAC	1 cut(s)	6
AlwNI	CAGNNNCTG	1 cut(s)	623
Aor51HI	AGCGCT	1 cut(s)	32
AoxI	GGCC	3 cut(s)	151, 170, 583
ApaI	GGGCCC	1 cut(s)	174
ApaLI	GTGCAC	1 cut(s)	6
ApeKI	GCWGC	2 cut(s)	90, 213
ApoI	RAATTY	2 cut(s)	841, 971
Asp700I	GAANNNNTTC	1 cut(s)	405
AspLEI	GCGC	1 cut(s)	33
AspS9I	GGNCC	2 cut(s)	170, 171
AsuC2I	CCSGG	2 cut(s)	228, 309
AsuHPI	GGTGA	4 cut(s)	107, 125, 208, 308
AsuII	TTCGAA	2 cut(s)	15, 464
BaeGI	GKGCMC	2 cut(s)	10, 174
BaeI	ACNNNNGTAYC	2 cut(s)	468, 501
BanI	GGYRCC	1 cut(s)	284
BanII	GRGCYC	4 cut(s)	62, 174, 733, 882
Bbv12I	GWGCWC	5 cut(s)	10, 62, 733, 882, 917
BbvI	GCAGC	2 cut(s)	102, 200
BccI	CCATC	3 cut(s)	98, 462, 706
BceAI	ACGGC	2 cut(s)	128, 779
BciT130I	CCWGG	2 cut(s)	155, 374
BcnI	CCSGG	2 cut(s)	228, 309
BcuI	ACTAGT	1 cut(s)	1001
BfaI	CTAG	1 cut(s)	1002
BfmI	CTRYAG	3 cut(s)	88, 480, 615
BfoI	RGCGCY	1 cut(s)	34
BfuAI	ACCTGC	1 cut(s)	913
BisI	GCNGC	2 cut(s)	91, 214
BlpI	GCTNAGC	1 cut(s)	732
BlsI	GCNGC	2 cut(s)	92, 215
Bme1390I	CCNGG	4 cut(s)	155, 228, 309, 374
BmgBI	CACGTC	2 cut(s)	863, 959
BmgT120I	GGNCC	2 cut(s)	170, 171
BmiI	GGNNCC	2 cut(s)	172, 286
BmrFI	CCNGG	4 cut(s)	155, 228, 309, 374
BmsI	GCATC	1 cut(s)	826
BplI	GAGNNNNNCTC	2 cut(s)	720, 752
Bpu1102I	GCTNAGC	1 cut(s)	732
Bpu14I	TTCGAA	2 cut(s)	15, 464
BpuEI	CTTGAG	1 cut(s)	773
BpuMI	CCSGG	2 cut(s)	228, 309
Bsa29I	ATCGAT	1 cut(s)	457
BsaHI	GRCGYC	1 cut(s)	766
BsaJI	CCNNGG	4 cut(s)	154, 308, 739, 918
Bsc4I	CCNNNNNNNGG	1 cut(s)	592
Bse118I	RCCGGY	1 cut(s)	216
Bse1I	ACTGG	2 cut(s)	286, 846
BseBI	CCWGG	2 cut(s)	155, 374
BseCI	ATCGAT	1 cut(s)	457
BseDI	CCNNGG	4 cut(s)	154, 308, 739, 918
BseGI	GGATG	3 cut(s)	223, 403, 700
BseLI	CCNNNNNNNGG	1 cut(s)	592
BseMII	CTCAG	1 cut(s)	746
BseNI	ACTGG	2 cut(s)	286, 846
BseSI	GKGCMC	2 cut(s)	10, 174
BseXI	GCAGC	2 cut(s)	102, 200
BseYI	CCCAGC	1 cut(s)	322
BsgI	GTGCAG	1 cut(s)	944
Bsh1285I	CGRYCG	1 cut(s)	129
BshFI	GGCC	3 cut(s)	153, 172, 585
BshNI	GGYRCC	1 cut(s)	284
BshVI	ATCGAT	1 cut(s)	457
BsiEI	CGRYCG	1 cut(s)	129
BsiHKAI	GWGCWC	5 cut(s)	10, 62, 733, 882, 917
BsiSI	CCGG	3 cut(s)	217, 228, 308
BslFI	GGGAC	1 cut(s)	434
BslI	CCNNNNNNNGG	1 cut(s)	592
BsmFI	GGGAC	1 cut(s)	434
BsmI	GAATGC	1 cut(s)	407
BsnI	GGCC	3 cut(s)	153, 172, 585
Bsp119I	TTCGAA	2 cut(s)	15, 464
Bsp120I	GGGCCC	1 cut(s)	170
Bsp1286I	GDGCHC	6 cut(s)	10, 62, 174, 733, 882, 917
Bsp143I	GATC	5 cut(s)	126, 301, 432, 458, 789
Bsp1720I	GCTNAGC	1 cut(s)	732
Bsp19I	CCATGG	1 cut(s)	918
BspACI	CCGC	1 cut(s)	672
BspANI	GGCC	3 cut(s)	153, 172, 585
BspCNI	CTCAG	1 cut(s)	745
BspDI	ATCGAT	1 cut(s)	457
BspLI	GGNNCC	2 cut(s)	172, 286
BspMAI	CTGCAG	2 cut(s)	92, 619
BspMI	ACCTGC	1 cut(s)	913
BspT104I	TTCGAA	2 cut(s)	15, 464
BspT107I	GGYRCC	1 cut(s)	284
BsrFI	RCCGGY	1 cut(s)	216
BsrI	ACTGG	2 cut(s)	286, 846
BssAI	RCCGGY	1 cut(s)	216
BssECI	CCNNGG	4 cut(s)	154, 308, 739, 918
BssMI	GATC	5 cut(s)	126, 301, 432, 458, 789
BssNI	GRCGYC	1 cut(s)	766
BssT1I	CCWWGG	1 cut(s)	918
Bst2UI	CCWGG	2 cut(s)	155, 374
Bst4CI	ACNGT	5 cut(s)	97, 184, 319, 484, 781
BstACI	GRCGYC	1 cut(s)	766
BstAPI	GCANNNNNTGC	1 cut(s)	866
BstBI	TTCGAA	2 cut(s)	15, 464
BstC8I	GCNNGC	3 cut(s)	444, 583, 831
BstDEI	CTNAG	3 cut(s)	20, 732, 800
BstDSI	CCRYGG	2 cut(s)	739, 918
BstF5I	GGATG	3 cut(s)	223, 403, 700
BstH2I	RGCGCY	1 cut(s)	34
BstHHI	GCGC	1 cut(s)	33
BstKTI	GATC	5 cut(s)	129, 304, 435, 461, 792
BstMBI	GATC	5 cut(s)	126, 301, 432, 458, 789
BstMCI	CGRYCG	1 cut(s)	129
BstMWI	GCNNNNNNNGC	6 cut(s)	30, 87, 319, 614, 866, 996
BstNI	CCWGG	2 cut(s)	155, 374
BstNSI	RCATGY	1 cut(s)	446
BstSCI	CCNGG	4 cut(s)	153, 226, 307, 372
BstSFI	CTRYAG	3 cut(s)	88, 480, 615
BstSLI	GKGCMC	2 cut(s)	10, 174
BstV1I	GCAGC	2 cut(s)	102, 200
BstXI	CCANNNNNNTGG	1 cut(s)	242
Bsu15I	ATCGAT	1 cut(s)	457
BsuRI	GGCC	3 cut(s)	153, 172, 585
BsuTUI	ATCGAT	1 cut(s)	457
BtgI	CCRYGG	2 cut(s)	739, 918
BtrI	CACGTC	2 cut(s)	863, 959
BtsCI	GGATG	3 cut(s)	223, 403, 700
BtsI	GCAGTG	2 cut(s)	39, 612
BtsIMutI	CAGTG	4 cut(s)	39, 612, 786, 853
BveI	ACCTGC	1 cut(s)	913
Cac8I	GCNNGC	3 cut(s)	444, 583, 831
CaiI	CAGNNNCTG	1 cut(s)	623
CfoI	GCGC	1 cut(s)	33
Cfr10I	RCCGGY	1 cut(s)	216
Cfr13I	GGNCC	2 cut(s)	170, 171
ClaI	ATCGAT	1 cut(s)	457
CseI	GACGC	2 cut(s)	87, 755
Csp6I	GTAC	3 cut(s)	180, 315, 706
CviQI	GTAC	3 cut(s)	180, 315, 706
DdeI	CTNAG	3 cut(s)	20, 732, 800
DpnI	GATC	5 cut(s)	128, 303, 434, 460, 791
DpnII	GATC	5 cut(s)	126, 301, 432, 458, 789
EaeI	YGGCCR	1 cut(s)	151
Ecl136II	GAGCTC	3 cut(s)	60, 731, 880
Eco130I	CCWWGG	1 cut(s)	918
Eco24I	GRGCYC	4 cut(s)	62, 174, 733, 882
Eco32I	GATATC	1 cut(s)	347
Eco47III	AGCGCT	1 cut(s)	32
Eco53kI	GAGCTC	3 cut(s)	60, 731, 880
Eco57I	CTGAAG	2 cut(s)	273, 891
EcoICRI	GAGCTC	3 cut(s)	60, 731, 880
EcoO109I	RGGNCCY	1 cut(s)	171
EcoRII	CCWGG	2 cut(s)	153, 372
EcoRV	GATATC	1 cut(s)	347
EcoT14I	CCWWGG	1 cut(s)	918
EcoT38I	GRGCYC	4 cut(s)	62, 174, 733, 882
ErhI	CCWWGG	1 cut(s)	918
FalI	AAGNNNNNCTT	2 cut(s)	849, 881
FaqI	GGGAC	1 cut(s)	434
FblI	GTMKAC	1 cut(s)	760
Fnu4HI	GCNGC	2 cut(s)	91, 214
FokI	GGATG	3 cut(s)	210, 410, 707
FriOI	GRGCYC	4 cut(s)	62, 174, 733, 882
Fsp4HI	GCNGC	2 cut(s)	91, 214
FspBI	CTAG	1 cut(s)	1002
GlaI	GCGC	1 cut(s)	32
GluI	GCNGC	2 cut(s)	91, 214
GsaI	CCCAGC	1 cut(s)	326
HaeII	RGCGCY	1 cut(s)	34
HaeIII	GGCC	3 cut(s)	153, 172, 585
HapII	CCGG	3 cut(s)	217, 228, 308
HgaI	GACGC	2 cut(s)	87, 755
HhaI	GCGC	1 cut(s)	33
Hin1I	GRCGYC	1 cut(s)	766
Hin6I	GCGC	1 cut(s)	31
HinP1I	GCGC	1 cut(s)	31
HinfI	GANTC	3 cut(s)	748, 774, 938
HpaII	CCGG	3 cut(s)	217, 228, 308
HphI	GGTGA	4 cut(s)	107, 125, 208, 308
Hpy166II	GTNNAC	4 cut(s)	8, 133, 761, 962
Hpy188I	TCNGA	4 cut(s)	206, 437, 794, 977
Hpy188III	TCNNGA	3 cut(s)	101, 410, 752
Hpy8I	GTNNAC	4 cut(s)	8, 133, 761, 962
Hpy99I	CGWCG	3 cut(s)	78, 81, 196
HpyAV	CCTTC	1 cut(s)	584
HpyCH4III	ACNGT	5 cut(s)	97, 184, 319, 484, 781
HpyCH4IV	ACGT	3 cut(s)	552, 862, 958
HpyF10VI	GCNNNNNNNGC	6 cut(s)	30, 87, 319, 614, 866, 996
HpyF3I	CTNAG	3 cut(s)	20, 732, 800
HpySE526I	ACGT	3 cut(s)	552, 862, 958
Hsp92I	GRCGYC	1 cut(s)	766
HspAI	GCGC	1 cut(s)	31
Kzo9I	GATC	5 cut(s)	126, 301, 432, 458, 789
LmnI	GCTCC	5 cut(s)	262, 741, 877, 885, 920
Lsp1109I	GCAGC	2 cut(s)	102, 200
LweI	GCATC	1 cut(s)	826
MaeI	CTAG	1 cut(s)	1002
MaeII	ACGT	3 cut(s)	552, 862, 958
MaeIII	GTNAC	2 cut(s)	219, 1004
MalI	GATC	5 cut(s)	128, 303, 434, 460, 791
MboI	GATC	5 cut(s)	126, 301, 432, 458, 789
MboII	GAAGA	4 cut(s)	76, 296, 453, 611
MfeI	CAATTG	1 cut(s)	165
MhlI	GDGCHC	6 cut(s)	10, 62, 174, 733, 882, 917
MluCI	AATT	5 cut(s)	165, 638, 841, 890, 971
MnlI	CCTC	2 cut(s)	130, 748
MroXI	GAANNNNTTC	1 cut(s)	405
MseI	TTAA	1 cut(s)	366
MslI	CAYNNNNRTG	1 cut(s)	138
MspI	CCGG	3 cut(s)	217, 228, 308
MspR9I	CCNGG	4 cut(s)	155, 228, 309, 374
MunI	CAATTG	1 cut(s)	165
Mva1269I	GAATGC	1 cut(s)	407
MvaI	CCWGG	2 cut(s)	155, 374
MwoI	GCNNNNNNNGC	6 cut(s)	30, 87, 319, 614, 866, 996
NciI	CCSGG	2 cut(s)	228, 309
NcoI	CCATGG	1 cut(s)	918
NdeII	GATC	5 cut(s)	126, 301, 432, 458, 789
NlaIV	GGNNCC	2 cut(s)	172, 286
NmeAIII	GCCGAG	1 cut(s)	129
NmuCI	GTSAC	1 cut(s)	1004
NspI	RCATGY	1 cut(s)	446
NspV	TTCGAA	2 cut(s)	15, 464
PaeI	GCATGC	1 cut(s)	446
PctI	GAATGC	1 cut(s)	407
PdmI	GAANNNNTTC	1 cut(s)	405
PfeI	GAWTC	3 cut(s)	748, 774, 938
PflMI	CCANNNNNTGG	1 cut(s)	592
PfoI	TCCNGGA	1 cut(s)	226
PkrI	GCNGC	2 cut(s)	92, 215
Ple19I	CGATCG	1 cut(s)	129
Psp124BI	GAGCTC	3 cut(s)	62, 733, 882
Psp1406I	AACGTT	1 cut(s)	552
Psp6I	CCWGG	2 cut(s)	153, 372
PspFI	CCCAGC	1 cut(s)	322
PspGI	CCWGG	2 cut(s)	153, 372
PspN4I	GGNNCC	2 cut(s)	172, 286
PspOMI	GGGCCC	1 cut(s)	170
PspPI	GGNCC	2 cut(s)	170, 171
PstI	CTGCAG	2 cut(s)	92, 619
PstNI	CAGNNNCTG	1 cut(s)	623
PvuI	CGATCG	1 cut(s)	129
RsaI	GTAC	3 cut(s)	181, 316, 707
RsaNI	GTAC	3 cut(s)	180, 315, 706
RseI	CAYNNNNRTG	1 cut(s)	138
SacI	GAGCTC	3 cut(s)	62, 733, 882
SaqAI	TTAA	1 cut(s)	366
SatI	GCNGC	2 cut(s)	91, 214
Sau3AI	GATC	5 cut(s)	126, 301, 432, 458, 789
Sau96I	GGNCC	2 cut(s)	170, 171
ScrFI	CCNGG	4 cut(s)	155, 228, 309, 374
SduI	GDGCHC	6 cut(s)	10, 62, 174, 733, 882, 917
SfaNI	GCATC	1 cut(s)	826
SfcI	CTRYAG	3 cut(s)	88, 480, 615
SfuI	TTCGAA	2 cut(s)	15, 464
SmiMI	CAYNNNNRTG	1 cut(s)	138
SmlI	CTYRAG	1 cut(s)	752
SmoI	CTYRAG	1 cut(s)	752
SpeI	ACTAGT	1 cut(s)	1001
SphI	GCATGC	1 cut(s)	446
Sse9I	AATT	5 cut(s)	165, 638, 841, 890, 971
SsiI	CCGC	1 cut(s)	672
SspMI	CTAG	1 cut(s)	1002
SstI	GAGCTC	3 cut(s)	62, 733, 882
StyD4I	CCNGG	4 cut(s)	153, 226, 307, 372
StyI	CCWWGG	1 cut(s)	918
TaaI	ACNGT	5 cut(s)	97, 184, 319, 484, 781
TaiI	ACGT	3 cut(s)	555, 865, 961
TaqI	TCGA	3 cut(s)	15, 457, 464
TasI	AATT	5 cut(s)	165, 638, 841, 890, 971
TatI	WGTACW	2 cut(s)	179, 705
TfiI	GAWTC	3 cut(s)	748, 774, 938
Tru1I	TTAA	1 cut(s)	366
Tru9I	TTAA	1 cut(s)	366
TscAI	CASTG	4 cut(s)	46, 619, 786, 853
TseFI	GTSAC	1 cut(s)	1004
TseI	GCWGC	2 cut(s)	90, 213
Tsp45I	GTSAC	1 cut(s)	1004
TspDTI	ATGAA	6 cut(s)	100, 395, 414, 623, 655, 814
TspGWI	ACGGA	2 cut(s)	728, 923
TspRI	CASTG	4 cut(s)	46, 619, 786, 853
Van91I	CCANNNNNTGG	1 cut(s)	592
VneI	GTGCAC	1 cut(s)	6
XapI	RAATTY	2 cut(s)	841, 971
XceI	RCATGY	1 cut(s)	446
XmiI	GTMKAC	1 cut(s)	760
XmnI	GAANNNNTTC	1 cut(s)	405
XspI	CTAG	1 cut(s)	1002

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.