Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0003927

Physical Location & Seq

Genomic Coordinates Forward (+)

16274102 .. 16276634

Gene Structure 2533 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1204600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGCGTGCGTTGGTGAAAGTTGGCGGCAAACGCTTAAGCTCTGCGCTGAGCAGCCTCAGCTCGCCGTATATCCGCCGCTTCTGCAGCAGCCTTAACTCCGGCTCCGTTCATCCCAGTGCAAACGTTCACCCCAATGCCGTTTTGGGTCAGGGTGTTTCAATTGGACCCTTTTGTACTGTTGGATCGTCGGCGAAGGTTGGCAATGGCTGCCGATTATACCCCGGAAGCCATATTTTTGGAAATACAGAAGTTGGGGAGCGTTGTGTTTTGTTGACTGGTGCCATTGTTGGTGATGATCTTCCAGGGCGTACCGTGCTCGGGTGTGATAATGTTATTGGACACCATGCCGTGGTTGGTGTCAAATGCCAAGATTTGAAGTACAAGTCAGGGGATGAATGTTTCCTTGATGTTGGGGACAACAACGATATCAGAGAGCATACTTCAATCCACCGATCTTCAAAGTCGAGTGATATAACAGCTATTGGGAATAACAATCTTATCATGGGATCTTGTCATATTGCCCACGATTGCAAGATCGGAAACAACATCATTTTTGCAAATAATACATTGCTGGCAGGCCATGTTGTGGTGGAAGATTATGCTCACACAGCAGGGGCTGTCGTCGTTCATCAATTCTGCCATGTTGGCTCTTTCTCATTTATTGGTGGTGGCTCTGTGATCACACAGGATGTTCCAAAGTACATGATGGTTGCAGGAGAAAGAGCTGTGCTTCGTGGTTTAAACCTTGAAGGTCTACGGCGTAATGGATTCACAGCCGCAGAGATCAGAAGCCTGAGAACAGCTTACCAAAAGATATTCATGCCTGCTGATGAAAATTCCGGGGATTTTGAAGAATGTCTTTCCCACGTGGAGCTGCATGCTGAATTGGCTCATATACCTGCAGTCCGTTCCATGGTGCAGTCTATCCGTGACTCTTTTGAAGGAAAGCGACGTGGAATATTGACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006040 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008374 GO:0008780 GO:0009987 GO:0016740 GO:0016746 GO:0016747 GO:0019637 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901135 GO:2001289

KEGG Pathways

Metabolic & Signaling

ko00540 ko01100 ko01503 map00540 map01100 map01503

Pfam Domains

Protein Families

Acetyltransf_11 Hexapep

Protein Analysis

323

Amino Acids

34.37

Weight (kDa)

7.64

Isoelectric Point (pI)

45.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GMPPB_C	PF25087	38 - 99	1.3e-07	GMPPB C-terminal domain
Hexapep	PF00132	161 - 192	2.3e-07	Bacterial transferase hexapeptide (six repeats)
Acetyltransf_11	PF13720	230 - 320	1.3e-19	Udp N-acetylglucosamine O-acyltransferase; Domain 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003927)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29540 AT4G29540 AT4G29540 AT4G29540
fragaria_vesca	FvH4_1g22100 FvH4_1g22100 FvH4_1g22100 FvH4_1g22100 FvH4_1g22100 FvH4_1g22100
malus_domestica	MD02G1076200.v1.1 MD13G1273400.v1.1 MD15G1204600.v1.1 MD17G1181800.v1.1
prunus_persica	Prupe.7G212400_v2.0.a1 Prupe.7G212400_v2.0.a1 Prupe.7G212400_v2.0.a1 Prupe.7G212400_v2.0.a1 Prupe.7G212400_v2.0.a1 Prupe.7G212400_v2.0.a1
pyrus_communis	pycom02g06050 pycom15g18160
rosa_chinensis	RchiOBHm_Chr2g0093061
rosa_laevigata	RLG00000016364
rosa_multiflora	Rmu_sc0006865.1_g000004
rosa_roxburghii	Rroxscaffold_2G00148550
rosa_rugosa	Rorug02G0031900 Rorug02G0032000 Rorug02G0032100.1
rosa_samantha	Rh2AG077600 Rh2BG079000 Rh2CG081300 Rh2DG076500
rosa_wichuraiana	Rw2G006860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	907
AccB1I	GGYRCC	1 cut(s)	278
AccB7I	CCANNNNNTGG	2 cut(s)	349, 586
AccI	GTMKAC	1 cut(s)	754
AciI	CCGC	4 cut(s)	24, 73, 76, 777
AclI	AACGTT	1 cut(s)	123
AclWI	GGATC	2 cut(s)	190, 514
AcsI	RAATTY	1 cut(s)	835
AcvI	CACGTG	1 cut(s)	868
AfaI	GTAC	4 cut(s)	175, 310, 380, 701
AfiI	CCNNNNNNNGG	4 cut(s)	318, 349, 586, 913
AflII	CTTAAG	1 cut(s)	34
AgsI	TTSAA	7 cut(s)	159, 376, 444, 459, 749, 851, 941
AjiI	CACGTC	1 cut(s)	953
AjnI	CCWGG	1 cut(s)	301
AluBI	AGCT	6 cut(s)	39, 60, 479, 725, 803, 874
AluI	AGCT	6 cut(s)	39, 60, 479, 725, 803, 874
Alw21I	GWGCWC	1 cut(s)	318
AlwI	GGATC	2 cut(s)	190, 514
AlwNI	CAGNNNCTG	1 cut(s)	617
Ama87I	CYCGRG	1 cut(s)	317
AoxI	GGCC	1 cut(s)	577
ApeKI	GCWGC	5 cut(s)	51, 84, 87, 207, 874
ApoI	RAATTY	1 cut(s)	835
AspLEI	GCGC	1 cut(s)	46
AspS9I	GGNCC	1 cut(s)	164
AsuC2I	CCSGG	2 cut(s)	222, 841
AsuHPI	GGTGA	3 cut(s)	25, 119, 302
AvaI	CYCGRG	1 cut(s)	317
AvaII	GGWCC	1 cut(s)	164
BanI	GGYRCC	1 cut(s)	278
BbrPI	CACGTG	1 cut(s)	868
Bbv12I	GWGCWC	1 cut(s)	318
BbvCI	CCTCAGC	1 cut(s)	56
BbvI	GCAGC	5 cut(s)	63, 96, 99, 194, 861
BccI	CCATC	1 cut(s)	700
BceAI	ACGGC	4 cut(s)	49, 122, 332, 773
BciT130I	CCWGG	1 cut(s)	303
BclI	TGATCA	1 cut(s)	678
BcnI	CCSGG	2 cut(s)	222, 841
BfmI	CTRYAG	2 cut(s)	82, 900
BfrI	CTTAAG	1 cut(s)	34
BfuAI	ACCTGC	1 cut(s)	907
BglI	GCCNNNNNGGC	1 cut(s)	645
BisI	GCNGC	8 cut(s)	25, 52, 76, 85, 88, 208, 777, 875
BlpI	GCTNAGC	1 cut(s)	47
BlsI	GCNGC	8 cut(s)	26, 53, 77, 86, 89, 209, 778, 876
Bme1390I	CCNGG	3 cut(s)	222, 303, 841
Bme18I	GGWCC	1 cut(s)	164
BmeT110I	CYCGRG	1 cut(s)	317
BmgBI	CACGTC	1 cut(s)	953
BmgT120I	GGNCC	1 cut(s)	164
BmiI	GGNNCC	3 cut(s)	103, 166, 280
BmrFI	CCNGG	3 cut(s)	222, 303, 841
BmrI	ACTGGG	1 cut(s)	108
BmuI	ACTGGG	1 cut(s)	108
Bpu10I	CCTNAGC	1 cut(s)	56
Bpu1102I	GCTNAGC	1 cut(s)	47
BpuMI	CCSGG	2 cut(s)	222, 841
BsaAI	YACGTR	1 cut(s)	868
BsaJI	CCNNGG	5 cut(s)	220, 302, 348, 840, 912
BsaXI	ACNNNNNCTCC	2 cut(s)	86, 116
Bsc4I	CCNNNNNNNGG	4 cut(s)	318, 349, 586, 913
Bse1I	ACTGG	2 cut(s)	114, 280
Bse3DI	GCAATG	2 cut(s)	208, 566
BseBI	CCWGG	1 cut(s)	303
BseDI	CCNNGG	5 cut(s)	220, 302, 348, 840, 912
BseGI	GGATG	3 cut(s)	109, 397, 694
BseLI	CCNNNNNNNGG	4 cut(s)	318, 349, 586, 913
BseMI	GCAATG	2 cut(s)	208, 566
BseMII	CTCAG	3 cut(s)	38, 70, 785
BseNI	ACTGG	2 cut(s)	114, 280
BseXI	GCAGC	5 cut(s)	63, 96, 99, 194, 861
BsgI	GTGCAG	1 cut(s)	938
BshFI	GGCC	1 cut(s)	579
BshNI	GGYRCC	1 cut(s)	278
BsiHKAI	GWGCWC	1 cut(s)	318
BsiHKCI	CYCGRG	1 cut(s)	317
BsiSI	CCGG	3 cut(s)	99, 222, 840
BslFI	GGGAC	1 cut(s)	428
BslI	CCNNNNNNNGG	4 cut(s)	318, 349, 586, 913
BsmFI	GGGAC	1 cut(s)	428
BsnI	GGCC	1 cut(s)	579
BsoBI	CYCGRG	1 cut(s)	317
Bsp1286I	GDGCHC	1 cut(s)	318
Bsp143I	GATC	7 cut(s)	182, 295, 452, 506, 534, 678, 783
Bsp1720I	GCTNAGC	1 cut(s)	47
Bsp19I	CCATGG	1 cut(s)	912
BspACI	CCGC	4 cut(s)	24, 73, 76, 777
BspANI	GGCC	1 cut(s)	579
BspCNI	CTCAG	3 cut(s)	39, 69, 786
BspLI	GGNNCC	3 cut(s)	103, 166, 280
BspMAI	CTGCAG	2 cut(s)	86, 904
BspMI	ACCTGC	1 cut(s)	907
BspPI	GGATC	2 cut(s)	190, 514
BspT107I	GGYRCC	1 cut(s)	278
BspTI	CTTAAG	1 cut(s)	34
BsrDI	GCAATG	2 cut(s)	208, 566
BsrI	ACTGG	2 cut(s)	114, 280
BssECI	CCNNGG	5 cut(s)	220, 302, 348, 840, 912
BssMI	GATC	7 cut(s)	182, 295, 452, 506, 534, 678, 783
BssT1I	CCWWGG	1 cut(s)	912
Bst2UI	CCWGG	1 cut(s)	303
Bst4CI	ACNGT	2 cut(s)	178, 313
BstAFI	CTTAAG	1 cut(s)	34
BstAPI	GCANNNNNTGC	1 cut(s)	207
BstBAI	YACGTR	1 cut(s)	868
BstC8I	GCNNGC	6 cut(s)	6, 62, 573, 577, 825, 879
BstDEI	CTNAG	3 cut(s)	47, 56, 794
BstDSI	CCRYGG	2 cut(s)	348, 912
BstF5I	GGATG	3 cut(s)	109, 397, 694
BstHHI	GCGC	1 cut(s)	46
BstKTI	GATC	7 cut(s)	185, 298, 455, 509, 537, 681, 786
BstMBI	GATC	7 cut(s)	182, 295, 452, 506, 534, 678, 783
BstMWI	GCNNNNNNNGC	9 cut(s)	30, 57, 81, 84, 207, 313, 608, 645, 887
BstNI	CCWGG	1 cut(s)	303
BstNSI	RCATGY	1 cut(s)	881
BstSCI	CCNGG	3 cut(s)	220, 301, 839
BstSFI	CTRYAG	2 cut(s)	82, 900
BstV1I	GCAGC	5 cut(s)	63, 96, 99, 194, 861
BstX2I	RGATCY	1 cut(s)	506
BstXI	CCANNNNNNTGG	1 cut(s)	236
BstYI	RGATCY	1 cut(s)	506
BsuRI	GGCC	1 cut(s)	579
BtgI	CCRYGG	2 cut(s)	348, 912
BtrI	CACGTC	1 cut(s)	953
BtsCI	GGATG	3 cut(s)	109, 397, 694
BtsIMutI	CAGTG	1 cut(s)	121
BveI	ACCTGC	1 cut(s)	907
Cac8I	GCNNGC	6 cut(s)	6, 62, 573, 577, 825, 879
CaiI	CAGNNNCTG	1 cut(s)	617
CfoI	GCGC	1 cut(s)	46
Cfr13I	GGNCC	1 cut(s)	164
Csp6I	GTAC	4 cut(s)	174, 309, 379, 700
CviAII	CATG	8 cut(s)	344, 502, 581, 641, 703, 820, 878, 913
CviQI	GTAC	4 cut(s)	174, 309, 379, 700
DdeI	CTNAG	3 cut(s)	47, 56, 794
DpnI	GATC	7 cut(s)	184, 297, 454, 508, 536, 680, 785
DpnII	GATC	7 cut(s)	182, 295, 452, 506, 534, 678, 783
DraI	TTTAAA	1 cut(s)	741
EciI	GGCGGA	1 cut(s)	62
Eco130I	CCWWGG	1 cut(s)	912
Eco32I	GATATC	1 cut(s)	427
Eco47I	GGWCC	1 cut(s)	164
Eco72I	CACGTG	1 cut(s)	868
Eco88I	CYCGRG	1 cut(s)	317
EcoRII	CCWGG	1 cut(s)	301
EcoRV	GATATC	1 cut(s)	427
EcoT14I	CCWWGG	1 cut(s)	912
ErhI	CCWWGG	1 cut(s)	912
FaeI	CATG	8 cut(s)	347, 505, 584, 644, 706, 823, 881, 916
FalI	AAGNNNNNCTT	2 cut(s)	843, 875
FaqI	GGGAC	1 cut(s)	428
FatI	CATG	8 cut(s)	343, 501, 580, 640, 702, 819, 877, 912
FbaI	TGATCA	1 cut(s)	678
FblI	GTMKAC	1 cut(s)	754
Fnu4HI	GCNGC	8 cut(s)	25, 52, 76, 85, 88, 208, 777, 875
FokI	GGATG	3 cut(s)	96, 404, 701
Fsp4HI	GCNGC	8 cut(s)	25, 52, 76, 85, 88, 208, 777, 875
GlaI	GCGC	1 cut(s)	45
GluI	GCNGC	8 cut(s)	25, 52, 76, 85, 88, 208, 777, 875
HaeIII	GGCC	1 cut(s)	579
HapII	CCGG	3 cut(s)	99, 222, 840
HhaI	GCGC	1 cut(s)	46
Hin1II	CATG	8 cut(s)	347, 505, 584, 644, 706, 823, 881, 916
Hin6I	GCGC	1 cut(s)	44
HinP1I	GCGC	1 cut(s)	44
HincII	GTYRAC	1 cut(s)	273
HindII	GTYRAC	1 cut(s)	273
HinfI	GANTC	2 cut(s)	768, 932
HpaII	CCGG	3 cut(s)	99, 222, 840
HphI	GGTGA	3 cut(s)	25, 119, 302
Hpy166II	GTNNAC	3 cut(s)	127, 273, 755
Hpy188I	TCNGA	3 cut(s)	431, 539, 788
Hpy8I	GTNNAC	3 cut(s)	127, 273, 755
Hpy99I	CGWCG	3 cut(s)	190, 626, 954
HpyAV	CCTTC	3 cut(s)	187, 743, 935
HpyCH4III	ACNGT	2 cut(s)	178, 313
HpyCH4IV	ACGT	3 cut(s)	123, 867, 952
HpyCH4V	TGCA	8 cut(s)	84, 119, 531, 557, 713, 877, 902, 919
HpyF10VI	GCNNNNNNNGC	9 cut(s)	30, 57, 81, 84, 207, 313, 608, 645, 887
HpyF3I	CTNAG	3 cut(s)	47, 56, 794
HpySE526I	ACGT	3 cut(s)	123, 867, 952
Hsp92II	CATG	8 cut(s)	347, 505, 584, 644, 706, 823, 881, 916
HspAI	GCGC	1 cut(s)	44
Ksp22I	TGATCA	1 cut(s)	678
Kzo9I	GATC	7 cut(s)	182, 295, 452, 506, 534, 678, 783
LmnI	GCTCC	3 cut(s)	107, 256, 871
Lsp1109I	GCAGC	5 cut(s)	63, 96, 99, 194, 861
MaeII	ACGT	3 cut(s)	123, 867, 952
MaeIII	GTNAC	1 cut(s)	929
MalI	GATC	7 cut(s)	184, 297, 454, 508, 536, 680, 785
MboI	GATC	7 cut(s)	182, 295, 452, 506, 534, 678, 783
MboII	GAAGA	4 cut(s)	290, 447, 605, 863
MfeI	CAATTG	1 cut(s)	159
MflI	RGATCY	1 cut(s)	506
MhlI	GDGCHC	1 cut(s)	318
MluCI	AATT	4 cut(s)	159, 632, 835, 884
MlyI	GAGTC	1 cut(s)	926
MmeI	TCCRAC	1 cut(s)	160
MnlI	CCTC	1 cut(s)	65
MseI	TTAA	3 cut(s)	35, 93, 740
MslI	CAYNNNNRTG	2 cut(s)	114, 132
MspCI	CTTAAG	1 cut(s)	34
MspI	CCGG	3 cut(s)	99, 222, 840
MspR9I	CCNGG	3 cut(s)	222, 303, 841
MssI	GTTTAAAC	1 cut(s)	741
MunI	CAATTG	1 cut(s)	159
MvaI	CCWGG	1 cut(s)	303
MwoI	GCNNNNNNNGC	9 cut(s)	30, 57, 81, 84, 207, 313, 608, 645, 887
NciI	CCSGG	2 cut(s)	222, 841
NcoI	CCATGG	1 cut(s)	912
NdeII	GATC	7 cut(s)	182, 295, 452, 506, 534, 678, 783
NlaIII	CATG	8 cut(s)	347, 505, 584, 644, 706, 823, 881, 916
NlaIV	GGNNCC	3 cut(s)	103, 166, 280
NmuCI	GTSAC	1 cut(s)	929
NspI	RCATGY	1 cut(s)	881
PaeI	GCATGC	1 cut(s)	881
PfeI	GAWTC	1 cut(s)	768
PflMI	CCANNNNNTGG	2 cut(s)	349, 586
PkrI	GCNGC	8 cut(s)	26, 53, 77, 86, 89, 209, 778, 876
PleI	GAGTC	1 cut(s)	926
PmaCI	CACGTG	1 cut(s)	868
PmeI	GTTTAAAC	1 cut(s)	741
PmlI	CACGTG	1 cut(s)	868
PpsI	GAGTC	1 cut(s)	926
Ppu21I	YACGTR	1 cut(s)	868
Psp1406I	AACGTT	1 cut(s)	123
Psp6I	CCWGG	1 cut(s)	301
PspCI	CACGTG	1 cut(s)	868
PspGI	CCWGG	1 cut(s)	301
PspN4I	GGNNCC	3 cut(s)	103, 166, 280
PspPI	GGNCC	1 cut(s)	164
PstI	CTGCAG	2 cut(s)	86, 904
PstNI	CAGNNNCTG	1 cut(s)	617
PsuI	RGATCY	1 cut(s)	506
RsaI	GTAC	4 cut(s)	175, 310, 380, 701
RsaNI	GTAC	4 cut(s)	174, 309, 379, 700
RseI	CAYNNNNRTG	2 cut(s)	114, 132
SaqAI	TTAA	3 cut(s)	35, 93, 740
SatI	GCNGC	8 cut(s)	25, 52, 76, 85, 88, 208, 777, 875
Sau3AI	GATC	7 cut(s)	182, 295, 452, 506, 534, 678, 783
Sau96I	GGNCC	1 cut(s)	164
SchI	GAGTC	1 cut(s)	926
ScrFI	CCNGG	3 cut(s)	222, 303, 841
SduI	GDGCHC	1 cut(s)	318
SfcI	CTRYAG	2 cut(s)	82, 900
SinI	GGWCC	1 cut(s)	164
SmiMI	CAYNNNNRTG	2 cut(s)	114, 132
SmlI	CTYRAG	1 cut(s)	34
SmoI	CTYRAG	1 cut(s)	34
SphI	GCATGC	1 cut(s)	881
Sse9I	AATT	4 cut(s)	159, 632, 835, 884
SsiI	CCGC	4 cut(s)	24, 73, 76, 777
SspI	AATATT	1 cut(s)	960
StyD4I	CCNGG	3 cut(s)	220, 301, 839
StyI	CCWWGG	1 cut(s)	912
TaaI	ACNGT	2 cut(s)	178, 313
TaiI	ACGT	3 cut(s)	126, 870, 955
TaqI	TCGA	1 cut(s)	464
TasI	AATT	4 cut(s)	159, 632, 835, 884
TatI	WGTACW	3 cut(s)	173, 378, 699
TauI	GCSGC	3 cut(s)	27, 78, 779
TfiI	GAWTC	1 cut(s)	768
Tru1I	TTAA	3 cut(s)	35, 93, 740
Tru9I	TTAA	3 cut(s)	35, 93, 740
TscAI	CASTG	1 cut(s)	121
TseFI	GTSAC	1 cut(s)	929
TseI	GCWGC	5 cut(s)	51, 84, 87, 207, 874
Tsp45I	GTSAC	1 cut(s)	929
TspDTI	ATGAA	5 cut(s)	98, 408, 617, 808, 846
TspGWI	ACGGA	3 cut(s)	94, 896, 917
TspRI	CASTG	1 cut(s)	121
Van91I	CCANNNNNTGG	2 cut(s)	349, 586
Vha464I	CTTAAG	1 cut(s)	34
VpaK11BI	GGWCC	1 cut(s)	164
XapI	RAATTY	1 cut(s)	835
XceI	RCATGY	1 cut(s)	881
XcmI	CCANNNNNNNNNTGG	2 cut(s)	139, 350
XmiI	GTMKAC	1 cut(s)	754

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.