Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003927

Physical Location & Seq

Genomic Coordinates Reverse (-)

2536105 .. 2536703

Gene Structure 599 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0031900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGAACTTCCGCTTCATCACCGCCGACACTCTCCAGAAGATCATCATGCTCTTCGCCCTGGCCCTCTGGACCAACTTCACCAGAAACGGAAGCCTCGAGTGGATGATCACGATTTTCTCACTCTCCACGCTTCCCAATACTCTGGTCATGGGAATCCCGCTACTGATCGCCATGTACGGCCACCGAATCCCGGAGTCCAGCAGCCTGATGGTCCAGGTCGTCGTGCTCCAGTGCATCATTTGGTACACTCTGTTACTCTTCCTCTTCGAGTACCGCGACGCCAAGCTGCTGATAATGGAGCAGTTCCCGGAGACTGCCGCCTCCATCGTCTCTTTCAAGGTCGACTCCGACGTCATGTCCCTCGACGGCCGCGACTTCCTCGAAACTGACGCCGAGATCGGCGACGACGACATGCTCTACGTCAAGGTGAAGAAGTCCAACGCGTCCAGACAGTCGCTCTCAGCAATGACGCCTCGCCCGTCCAACCTCACCGGAGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006040 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008374 GO:0008780 GO:0009987 GO:0016740 GO:0016746 GO:0016747 GO:0019637 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901135 GO:2001289

KEGG Pathways

Metabolic & Signaling

ko00540 ko01100 ko01503 map00540 map01100 map01503

Pfam Domains

Protein Families

Acetyltransf_11 Hexapep

Protein Analysis

166

Amino Acids

18.79

Weight (kDa)

4.9

Isoelectric Point (pI)

21.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mem_trans	PF03547	1 - 145	1.4e-34	Membrane transport protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003927)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29540 AT4G29540 AT4G29540 AT4G29540
fragaria_vesca	FvH4_1g22100 FvH4_1g22100 FvH4_1g22100 FvH4_1g22100 FvH4_1g22100 FvH4_1g22100
malus_domestica	MD02G1076200.v1.1 MD13G1273400.v1.1 MD15G1204600.v1.1 MD17G1181800.v1.1
prunus_persica	Prupe.7G212400_v2.0.a1 Prupe.7G212400_v2.0.a1 Prupe.7G212400_v2.0.a1 Prupe.7G212400_v2.0.a1 Prupe.7G212400_v2.0.a1 Prupe.7G212400_v2.0.a1
pyrus_communis	pycom02g06050 pycom15g18160
rosa_chinensis	RchiOBHm_Chr2g0093061
rosa_laevigata	RLG00000016364
rosa_multiflora	Rmu_sc0006865.1_g000004
rosa_roxburghii	Rroxscaffold_2G00148550
rosa_rugosa	Rorug02G0031900 Rorug02G0032000 Rorug02G0032100.1
rosa_samantha	Rh2AG077600 Rh2BG079000 Rh2CG081300 Rh2DG076500
rosa_wichuraiana	Rw2G006860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	350
AatII	GACGTC	1 cut(s)	354
AccI	GTMKAC	1 cut(s)	342
AccII	CGCG	3 cut(s)	276, 372, 443
AciI	CCGC	6 cut(s)	10, 21, 158, 274, 318, 370
AcoI	YGGCCR	2 cut(s)	178, 367
AcyI	GRCGYC	4 cut(s)	279, 351, 390, 470
AfaI	GTAC	3 cut(s)	176, 245, 272
AfiI	CCNNNNNNNGG	1 cut(s)	190
AflIII	ACRYGT	1 cut(s)	441
AgsI	TTSAA	1 cut(s)	337
AhdI	GACNNNNNGTC	1 cut(s)	355
AjnI	CCWGG	2 cut(s)	57, 213
AluBI	AGCT	1 cut(s)	286
AluI	AGCT	1 cut(s)	286
Alw21I	GWGCWC	1 cut(s)	228
Alw26I	GTCTC	2 cut(s)	305, 334
Ama87I	CYCGRG	1 cut(s)	95
AoxI	GGCC	3 cut(s)	60, 178, 367
ApeKI	GCWGC	2 cut(s)	201, 286
AspS9I	GGNCC	3 cut(s)	61, 69, 211
AsuC2I	CCSGG	2 cut(s)	191, 308
AsuHPI	GGTGA	4 cut(s)	10, 70, 439, 481
AvaI	CYCGRG	1 cut(s)	95
AvaII	GGWCC	2 cut(s)	69, 211
Bbv12I	GWGCWC	1 cut(s)	228
BbvI	GCAGC	2 cut(s)	213, 273
BccI	CCATC	2 cut(s)	202, 332
BceAI	ACGGC	2 cut(s)	193, 382
BciT130I	CCWGG	2 cut(s)	59, 215
BclI	TGATCA	1 cut(s)	105
BcnI	CCSGG	2 cut(s)	191, 308
BcoDI	GTCTC	2 cut(s)	305, 334
BisI	GCNGC	4 cut(s)	202, 287, 318, 370
BlsI	GCNGC	4 cut(s)	203, 288, 319, 371
Bme1390I	CCNGG	4 cut(s)	59, 191, 215, 308
Bme18I	GGWCC	2 cut(s)	69, 211
BmeRI	GACNNNNNGTC	1 cut(s)	355
BmeT110I	CYCGRG	1 cut(s)	95
BmgT120I	GGNCC	3 cut(s)	61, 69, 211
BmrFI	CCNGG	4 cut(s)	59, 191, 215, 308
BmsI	GCATC	1 cut(s)	243
BpmI	CTGGAG	2 cut(s)	17, 212
BpuMI	CCSGG	2 cut(s)	191, 308
BsaHI	GRCGYC	4 cut(s)	279, 351, 390, 470
BsaJI	CCNNGG	1 cut(s)	57
BsaWI	WCCGGW	1 cut(s)	491
Bsc4I	CCNNNNNNNGG	1 cut(s)	190
Bse1I	ACTGG	1 cut(s)	229
Bse3DI	GCAATG	1 cut(s)	471
BseBI	CCWGG	2 cut(s)	59, 215
BseDI	CCNNGG	1 cut(s)	57
BseGI	GGATG	1 cut(s)	108
BseLI	CCNNNNNNNGG	1 cut(s)	190
BseMI	GCAATG	1 cut(s)	471
BseMII	CTCAG	1 cut(s)	474
BseNI	ACTGG	1 cut(s)	229
BseX3I	CGGCCG	1 cut(s)	367
BseXI	GCAGC	2 cut(s)	213, 273
Bsh1236I	CGCG	3 cut(s)	276, 372, 443
Bsh1285I	CGRYCG	1 cut(s)	370
BshFI	GGCC	3 cut(s)	62, 180, 369
BsiEI	CGRYCG	1 cut(s)	370
BsiHKAI	GWGCWC	1 cut(s)	228
BsiHKCI	CYCGRG	1 cut(s)	95
BsiSI	CCGG	3 cut(s)	191, 308, 492
BslFI	GGGAC	1 cut(s)	343
BslI	CCNNNNNNNGG	1 cut(s)	190
BsmAI	GTCTC	2 cut(s)	305, 334
BsmBI	CGTCTC	1 cut(s)	334
BsmFI	GGGAC	1 cut(s)	343
BsnI	GGCC	3 cut(s)	62, 180, 369
BsoBI	CYCGRG	1 cut(s)	95
Bsp1286I	GDGCHC	1 cut(s)	228
Bsp143I	GATC	4 cut(s)	39, 105, 165, 396
BspACI	CCGC	6 cut(s)	10, 21, 158, 274, 318, 370
BspANI	GGCC	3 cut(s)	62, 180, 369
BspCNI	CTCAG	1 cut(s)	473
BspFNI	CGCG	3 cut(s)	276, 372, 443
BspQI	GCTCTTC	1 cut(s)	56
BsrDI	GCAATG	1 cut(s)	471
BsrI	ACTGG	1 cut(s)	229
BssECI	CCNNGG	1 cut(s)	57
BssMI	GATC	4 cut(s)	39, 105, 165, 396
BssNI	GRCGYC	4 cut(s)	279, 351, 390, 470
Bst2UI	CCWGG	2 cut(s)	59, 215
Bst4CI	ACNGT	1 cut(s)	453
Bst6I	CTCTTC	3 cut(s)	56, 263, 269
BstACI	GRCGYC	4 cut(s)	279, 351, 390, 470
BstDEI	CTNAG	1 cut(s)	460
BstF5I	GGATG	1 cut(s)	108
BstFNI	CGCG	3 cut(s)	276, 372, 443
BstKTI	GATC	4 cut(s)	42, 108, 168, 399
BstMAI	GTCTC	2 cut(s)	305, 334
BstMBI	GATC	4 cut(s)	39, 105, 165, 396
BstMCI	CGRYCG	1 cut(s)	370
BstNI	CCWGG	2 cut(s)	59, 215
BstNSI	RCATGY	1 cut(s)	415
BstSCI	CCNGG	4 cut(s)	57, 189, 213, 306
BstUI	CGCG	3 cut(s)	276, 372, 443
BstV1I	GCAGC	2 cut(s)	213, 273
BstXI	CCANNNNNNTGG	1 cut(s)	142
BstZI	CGGCCG	1 cut(s)	367
BsuRI	GGCC	3 cut(s)	62, 180, 369
BtsCI	GGATG	1 cut(s)	108
BtsIMutI	CAGTG	1 cut(s)	236
Cfr13I	GGNCC	3 cut(s)	61, 69, 211
CseI	GACGC	4 cut(s)	287, 398, 432, 478
Csp6I	GTAC	3 cut(s)	175, 244, 271
CviAII	CATG	5 cut(s)	46, 148, 172, 355, 412
CviJI	RGCY	6 cut(s)	62, 93, 180, 204, 286, 369
CviKI_1	RGCY	6 cut(s)	62, 93, 180, 204, 286, 369
CviQI	GTAC	3 cut(s)	175, 244, 271
DdeI	CTNAG	1 cut(s)	460
DpnI	GATC	4 cut(s)	41, 107, 167, 398
DpnII	GATC	4 cut(s)	39, 105, 165, 396
DrdI	GACNNNNNNGTC	1 cut(s)	350
DriI	GACNNNNNGTC	1 cut(s)	355
DseDI	GACNNNNNNGTC	1 cut(s)	350
EaeI	YGGCCR	2 cut(s)	178, 367
EagI	CGGCCG	1 cut(s)	367
Eam1104I	CTCTTC	3 cut(s)	56, 263, 269
Eam1105I	GACNNNNNGTC	1 cut(s)	355
EarI	CTCTTC	3 cut(s)	56, 263, 269
EclXI	CGGCCG	1 cut(s)	367
Eco47I	GGWCC	2 cut(s)	69, 211
Eco52I	CGGCCG	1 cut(s)	367
Eco88I	CYCGRG	1 cut(s)	95
EcoRII	CCWGG	2 cut(s)	57, 213
Esp3I	CGTCTC	1 cut(s)	334
FaeI	CATG	5 cut(s)	49, 151, 175, 358, 415
FaiI	YATR	5 cut(s)	47, 149, 173, 356, 413
FaqI	GGGAC	1 cut(s)	343
FatI	CATG	5 cut(s)	45, 147, 171, 354, 411
FauI	CCCGC	1 cut(s)	165
FbaI	TGATCA	1 cut(s)	105
FblI	GTMKAC	1 cut(s)	342
Fnu4HI	GCNGC	4 cut(s)	202, 287, 318, 370
FokI	GGATG	1 cut(s)	115
Fsp4HI	GCNGC	4 cut(s)	202, 287, 318, 370
GluI	GCNGC	4 cut(s)	202, 287, 318, 370
GsuI	CTGGAG	2 cut(s)	17, 212
HaeIII	GGCC	3 cut(s)	62, 180, 369
HapII	CCGG	3 cut(s)	191, 308, 492
HgaI	GACGC	4 cut(s)	287, 398, 432, 478
Hin1I	GRCGYC	4 cut(s)	279, 351, 390, 470
Hin1II	CATG	5 cut(s)	49, 151, 175, 358, 415
HincII	GTYRAC	1 cut(s)	343
HindII	GTYRAC	1 cut(s)	343
HinfI	GANTC	4 cut(s)	153, 186, 194, 344
HpaII	CCGG	3 cut(s)	191, 308, 492
HphI	GGTGA	4 cut(s)	10, 70, 439, 481
Hpy166II	GTNNAC	2 cut(s)	246, 343
Hpy188I	TCNGA	1 cut(s)	349
Hpy188III	TCNNGA	4 cut(s)	34, 67, 109, 447
Hpy8I	GTNNAC	2 cut(s)	246, 343
Hpy99I	CGWCG	6 cut(s)	224, 281, 353, 368, 407, 410
HpyCH4III	ACNGT	1 cut(s)	453
HpyCH4IV	ACGT	2 cut(s)	351, 420
HpyCH4V	TGCA	1 cut(s)	234
HpyF3I	CTNAG	1 cut(s)	460
HpySE526I	ACGT	2 cut(s)	351, 420
Hsp92I	GRCGYC	4 cut(s)	279, 351, 390, 470
Hsp92II	CATG	5 cut(s)	49, 151, 175, 358, 415
Ksp22I	TGATCA	1 cut(s)	105
Kzo9I	GATC	4 cut(s)	39, 105, 165, 396
LguI	GCTCTTC	1 cut(s)	56
LmnI	GCTCC	3 cut(s)	231, 298, 494
Lsp1109I	GCAGC	2 cut(s)	213, 273
LweI	GCATC	1 cut(s)	243
MaeII	ACGT	2 cut(s)	351, 420
MaeIII	GTNAC	1 cut(s)	252
MalI	GATC	4 cut(s)	41, 107, 167, 398
MboI	GATC	4 cut(s)	39, 105, 165, 396
MboII	GAAGA	5 cut(s)	43, 49, 250, 256, 442
MhlI	GDGCHC	1 cut(s)	228
MluI	ACGCGT	1 cut(s)	441
MlyI	GAGTC	2 cut(s)	203, 338
MmeI	TCCRAC	2 cut(s)	372, 462
MnlI	CCTC	8 cut(s)	74, 104, 272, 331, 371, 389, 483, 497
MspI	CCGG	3 cut(s)	191, 308, 492
MspR9I	CCNGG	4 cut(s)	59, 191, 215, 308
MvaI	CCWGG	2 cut(s)	59, 215
MvnI	CGCG	3 cut(s)	276, 372, 443
NciI	CCSGG	2 cut(s)	191, 308
NdeII	GATC	4 cut(s)	39, 105, 165, 396
NlaIII	CATG	5 cut(s)	49, 151, 175, 358, 415
NmeAIII	GCCGAG	1 cut(s)	418
NspI	RCATGY	1 cut(s)	415
PaeR7I	CTCGAG	1 cut(s)	95
PciSI	GCTCTTC	1 cut(s)	56
PcsI	WCGNNNNNNNCGW	6 cut(s)	93, 273, 348, 369, 405, 476
PfeI	GAWTC	2 cut(s)	153, 186
PfoI	TCCNGGA	2 cut(s)	189, 306
PkrI	GCNGC	4 cut(s)	203, 288, 319, 371
PleI	GAGTC	2 cut(s)	202, 338
PpsI	GAGTC	2 cut(s)	202, 338
Psp6I	CCWGG	2 cut(s)	57, 213
PspGI	CCWGG	2 cut(s)	57, 213
PspPI	GGNCC	3 cut(s)	61, 69, 211
PspXI	VCTCGAGB	1 cut(s)	95
RsaI	GTAC	3 cut(s)	176, 245, 272
RsaNI	GTAC	3 cut(s)	175, 244, 271
SalI	GTCGAC	1 cut(s)	341
SapI	GCTCTTC	1 cut(s)	56
SatI	GCNGC	4 cut(s)	202, 287, 318, 370
Sau3AI	GATC	4 cut(s)	39, 105, 165, 396
Sau96I	GGNCC	3 cut(s)	61, 69, 211
SchI	GAGTC	2 cut(s)	203, 338
ScrFI	CCNGG	4 cut(s)	59, 191, 215, 308
SduI	GDGCHC	1 cut(s)	228
SetI	ASST	7 cut(s)	219, 288, 342, 354, 423, 429, 489
SfaNI	GCATC	1 cut(s)	243
Sfr274I	CTCGAG	1 cut(s)	95
SinI	GGWCC	2 cut(s)	69, 211
SlaI	CTCGAG	1 cut(s)	95
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
SsiI	CCGC	6 cut(s)	10, 21, 158, 274, 318, 370
StyD4I	CCNGG	4 cut(s)	57, 189, 213, 306
TaaI	ACNGT	1 cut(s)	453
TaiI	ACGT	2 cut(s)	354, 423
TaqI	TCGA	5 cut(s)	96, 267, 342, 363, 381
TauI	GCSGC	2 cut(s)	320, 372
TfiI	GAWTC	2 cut(s)	153, 186
TscAI	CASTG	1 cut(s)	236
TseI	GCWGC	2 cut(s)	201, 286
TspDTI	ATGAA	2 cut(s)	4, 17
TspGWI	ACGGA	1 cut(s)	102
TspRI	CASTG	1 cut(s)	236
VpaK11BI	GGWCC	2 cut(s)	69, 211
XceI	RCATGY	1 cut(s)	415
XcmI	CCANNNNNNNNNTGG	1 cut(s)	205
XhoI	CTCGAG	1 cut(s)	95
XmiI	GTMKAC	1 cut(s)	342
ZraI	GACGTC	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.