Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003927

Physical Location & Seq

Genomic Coordinates Reverse (-)

86212833 .. 86215629

Gene Structure 2797 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00148550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGTGTGCACTATTCAAACTTAGCACCAAGCGCTTATTCACTGCCCTGAACAACAACAACCAGAGCTCTCTATCTCTGCGACGACGCTTCTTCTGCAGCACAGTTTCCGATGGCTTCATTCACCCCTCTGCGATCGTTCACCCCAATGCCATTCTCGGCCAGGGTGTTTCAATTGGGCCCTTTTGTACTGTTGGGTCGTCGGTGAAGCTCGGAAATGGCTGCCGGTTACATCCCGGAAGCCATATTTTTGGGAATACTGAAGTTGGGGAGCGTTGTGTTTTGATGACTGGTGCCATTGTTGGTGATGATCTTCCGGGGCGTACTGTGCTGGGTTGCAATAATGTTATTGGATATCATGCTGTGGTTGGTGTTAAATGCCAGGACGTGAAATACAAGTCAGGGGATGAATGCTTTCTTGATGTTGGGGACAACAATGAGATCAGAGAGCATGCTTCAATCCATCGATCTTCGAAGTCAAGTGATACTACAGTTATTGGGAATAACAATCTTATCATGGGTTCTTGCCATATTGCCCATGATTGCAAGGTTGGGAACAACGTCATTTTTGCGAATAATACCCTTCTGGCAGGCCATGTTGTGGTGGAAGATTATGCTCACACTGCAGGGGCTGTTGTTGTTCATCAATTCTGTCATGTTGGTTCTTTCGCTTTCATTGGCGGTGGCTCTGTGATTGTACAGGATGTTCCAAAGTACATGATGGTTGCAGGAGAAAGAGCTCAGCTCCGTGGTTTGAATCTTGAGGGTCTACGGCGTCATGGATTCACAGTGGCAGAGATCAGAAGCCTTAGAACAGCTTACCAAAGGATATTCATGCCTGCTGATGCAAATTCCAGTGGTTTTGAAGCACGTCTTGCTGAAGTGGAGCTCCATGATAAATTGGCTCATATACCTGCTGTGTGCTCCATGGTGCAGTCTATCCGTGATTCTTTCAAAGAAAAAAGACGTGGACTATGCAAATTCAGACATTGGAATAGCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006040 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008374 GO:0008780 GO:0009987 GO:0016740 GO:0016746 GO:0016747 GO:0019637 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901135 GO:2001289

KEGG Pathways

Metabolic & Signaling

ko00540 ko01100 ko01503 map00540 map01100 map01503

Pfam Domains

Protein Families

Acetyltransf_11 Hexapep

Protein Analysis

333

Amino Acids

36.14

Weight (kDa)

8.79

Isoelectric Point (pI)

41.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GMPPB_C	PF25087	41 - 103	4.6e-08	GMPPB C-terminal domain
Hexapep	PF00132	163 - 196	1.9e-09	Bacterial transferase hexapeptide (six repeats)
Acetyltransf_11	PF13720	234 - 325	3.9e-19	Udp N-acetylglucosamine O-acyltransferase; Domain 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003927)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29540 AT4G29540 AT4G29540 AT4G29540
fragaria_vesca	FvH4_1g22100 FvH4_1g22100 FvH4_1g22100 FvH4_1g22100 FvH4_1g22100 FvH4_1g22100
malus_domestica	MD02G1076200.v1.1 MD13G1273400.v1.1 MD15G1204600.v1.1 MD17G1181800.v1.1
prunus_persica	Prupe.7G212400_v2.0.a1 Prupe.7G212400_v2.0.a1 Prupe.7G212400_v2.0.a1 Prupe.7G212400_v2.0.a1 Prupe.7G212400_v2.0.a1 Prupe.7G212400_v2.0.a1
pyrus_communis	pycom02g06050 pycom15g18160
rosa_chinensis	RchiOBHm_Chr2g0093061
rosa_laevigata	RLG00000016364
rosa_multiflora	Rmu_sc0006865.1_g000004
rosa_roxburghii	Rroxscaffold_2G00148550
rosa_rugosa	Rorug02G0031900 Rorug02G0032000 Rorug02G0032100.1
rosa_samantha	Rh2AG077600 Rh2BG079000 Rh2CG081300 Rh2DG076500
rosa_wichuraiana	Rw2G006860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	919
AccB1I	GGYRCC	1 cut(s)	290
AccB7I	CCANNNNNTGG	1 cut(s)	598
AccI	GTMKAC	1 cut(s)	766
AciI	CCGC	1 cut(s)	678
AcoI	YGGCCR	1 cut(s)	157
AcsI	RAATTY	2 cut(s)	847, 977
AcuI	CTGAAG	2 cut(s)	279, 897
AcyI	GRCGYC	1 cut(s)	772
AfaI	GTAC	4 cut(s)	187, 322, 696, 713
AfeI	AGCGCT	1 cut(s)	32
AfiI	CCNNNNNNNGG	1 cut(s)	598
AgsI	TTSAA	6 cut(s)	16, 171, 456, 754, 863, 952
AjiI	CACGTC	3 cut(s)	385, 869, 965
AjnI	CCWGG	2 cut(s)	159, 378
AjuI	GAANNNNNNNTTGG	2 cut(s)	20, 52
AluBI	AGCT	7 cut(s)	66, 208, 737, 742, 815, 886, 996
AluI	AGCT	7 cut(s)	66, 208, 737, 742, 815, 886, 996
Alw21I	GWGCWC	5 cut(s)	10, 68, 739, 888, 923
Alw44I	GTGCAC	1 cut(s)	6
AlwNI	CAGNNNCTG	1 cut(s)	629
Aor51HI	AGCGCT	1 cut(s)	32
AoxI	GGCC	3 cut(s)	157, 176, 589
ApaI	GGGCCC	1 cut(s)	180
ApaLI	GTGCAC	1 cut(s)	6
ApeKI	GCWGC	2 cut(s)	96, 219
ApoI	RAATTY	2 cut(s)	847, 977
Asp700I	GAANNNNTTC	1 cut(s)	411
AspLEI	GCGC	1 cut(s)	33
AspS9I	GGNCC	2 cut(s)	176, 177
AsuC2I	CCSGG	2 cut(s)	234, 315
AsuHPI	GGTGA	4 cut(s)	113, 131, 214, 314
AsuII	TTCGAA	1 cut(s)	470
BaeGI	GKGCMC	2 cut(s)	10, 180
BaeI	ACNNNNGTAYC	2 cut(s)	474, 507
BanI	GGYRCC	1 cut(s)	290
BanII	GRGCYC	4 cut(s)	68, 180, 739, 888
Bbv12I	GWGCWC	5 cut(s)	10, 68, 739, 888, 923
BbvI	GCAGC	2 cut(s)	108, 206
BccI	CCATC	3 cut(s)	104, 468, 712
BceAI	ACGGC	1 cut(s)	785
BciT130I	CCWGG	2 cut(s)	161, 380
BcnI	CCSGG	2 cut(s)	234, 315
BfmI	CTRYAG	3 cut(s)	94, 486, 621
BfoI	RGCGCY	1 cut(s)	34
BfuAI	ACCTGC	1 cut(s)	919
BisI	GCNGC	2 cut(s)	97, 220
BlpI	GCTNAGC	1 cut(s)	738
BlsI	GCNGC	2 cut(s)	98, 221
Bme1390I	CCNGG	4 cut(s)	161, 234, 315, 380
BmgBI	CACGTC	3 cut(s)	385, 869, 965
BmgT120I	GGNCC	2 cut(s)	176, 177
BmiI	GGNNCC	2 cut(s)	178, 292
BmrFI	CCNGG	4 cut(s)	161, 234, 315, 380
BmsI	GCATC	1 cut(s)	832
BplI	GAGNNNNNCTC	2 cut(s)	726, 758
Bpu1102I	GCTNAGC	1 cut(s)	738
Bpu14I	TTCGAA	1 cut(s)	470
BpuEI	CTTGAG	1 cut(s)	779
BpuMI	CCSGG	2 cut(s)	234, 315
Bsa29I	ATCGAT	1 cut(s)	463
BsaHI	GRCGYC	1 cut(s)	772
BsaJI	CCNNGG	4 cut(s)	160, 314, 745, 924
Bsc4I	CCNNNNNNNGG	1 cut(s)	598
Bse118I	RCCGGY	1 cut(s)	222
Bse1I	ACTGG	2 cut(s)	292, 852
BseBI	CCWGG	2 cut(s)	161, 380
BseCI	ATCGAT	1 cut(s)	463
BseDI	CCNNGG	4 cut(s)	160, 314, 745, 924
BseGI	GGATG	3 cut(s)	229, 409, 706
BseLI	CCNNNNNNNGG	1 cut(s)	598
BseMII	CTCAG	1 cut(s)	752
BseNI	ACTGG	2 cut(s)	292, 852
BseSI	GKGCMC	2 cut(s)	10, 180
BseXI	GCAGC	2 cut(s)	108, 206
BseYI	CCCAGC	1 cut(s)	328
BsgI	GTGCAG	1 cut(s)	950
Bsh1285I	CGRYCG	1 cut(s)	135
BshFI	GGCC	3 cut(s)	159, 178, 591
BshNI	GGYRCC	1 cut(s)	290
BshVI	ATCGAT	1 cut(s)	463
BsiEI	CGRYCG	1 cut(s)	135
BsiHKAI	GWGCWC	5 cut(s)	10, 68, 739, 888, 923
BsiSI	CCGG	3 cut(s)	223, 234, 314
BslFI	GGGAC	1 cut(s)	440
BslI	CCNNNNNNNGG	1 cut(s)	598
BsmFI	GGGAC	1 cut(s)	440
BsmI	GAATGC	1 cut(s)	413
BsnI	GGCC	3 cut(s)	159, 178, 591
Bsp119I	TTCGAA	1 cut(s)	470
Bsp120I	GGGCCC	1 cut(s)	176
Bsp1286I	GDGCHC	6 cut(s)	10, 68, 180, 739, 888, 923
Bsp1407I	TGTACA	1 cut(s)	694
Bsp143I	GATC	5 cut(s)	132, 307, 438, 464, 795
Bsp1720I	GCTNAGC	1 cut(s)	738
Bsp19I	CCATGG	1 cut(s)	924
BspACI	CCGC	1 cut(s)	678
BspANI	GGCC	3 cut(s)	159, 178, 591
BspCNI	CTCAG	1 cut(s)	751
BspDI	ATCGAT	1 cut(s)	463
BspLI	GGNNCC	2 cut(s)	178, 292
BspMAI	CTGCAG	2 cut(s)	98, 625
BspMI	ACCTGC	1 cut(s)	919
BspT104I	TTCGAA	1 cut(s)	470
BspT107I	GGYRCC	1 cut(s)	290
BsrFI	RCCGGY	1 cut(s)	222
BsrGI	TGTACA	1 cut(s)	694
BsrI	ACTGG	2 cut(s)	292, 852
BssAI	RCCGGY	1 cut(s)	222
BssECI	CCNNGG	4 cut(s)	160, 314, 745, 924
BssMI	GATC	5 cut(s)	132, 307, 438, 464, 795
BssNI	GRCGYC	1 cut(s)	772
BssT1I	CCWWGG	1 cut(s)	924
Bst2UI	CCWGG	2 cut(s)	161, 380
Bst4CI	ACNGT	5 cut(s)	103, 190, 325, 490, 787
BstACI	GRCGYC	1 cut(s)	772
BstAPI	GCANNNNNTGC	1 cut(s)	872
BstAUI	TGTACA	1 cut(s)	694
BstBI	TTCGAA	1 cut(s)	470
BstC8I	GCNNGC	3 cut(s)	450, 589, 837
BstDEI	CTNAG	3 cut(s)	20, 738, 806
BstDSI	CCRYGG	2 cut(s)	745, 924
BstF5I	GGATG	3 cut(s)	229, 409, 706
BstH2I	RGCGCY	1 cut(s)	34
BstHHI	GCGC	1 cut(s)	33
BstKTI	GATC	5 cut(s)	135, 310, 441, 467, 798
BstMBI	GATC	5 cut(s)	132, 307, 438, 464, 795
BstMCI	CGRYCG	1 cut(s)	135
BstMWI	GCNNNNNNNGC	5 cut(s)	30, 93, 325, 620, 872
BstNI	CCWGG	2 cut(s)	161, 380
BstNSI	RCATGY	1 cut(s)	452
BstSCI	CCNGG	4 cut(s)	159, 232, 313, 378
BstSFI	CTRYAG	3 cut(s)	94, 486, 621
BstSLI	GKGCMC	2 cut(s)	10, 180
BstV1I	GCAGC	2 cut(s)	108, 206
BstXI	CCANNNNNNTGG	1 cut(s)	248
Bsu15I	ATCGAT	1 cut(s)	463
BsuRI	GGCC	3 cut(s)	159, 178, 591
BsuTUI	ATCGAT	1 cut(s)	463
BtgI	CCRYGG	2 cut(s)	745, 924
BtrI	CACGTC	3 cut(s)	385, 869, 965
BtsCI	GGATG	3 cut(s)	229, 409, 706
BtsI	GCAGTG	2 cut(s)	39, 618
BtsIMutI	CAGTG	4 cut(s)	39, 618, 792, 859
BveI	ACCTGC	1 cut(s)	919
Cac8I	GCNNGC	3 cut(s)	450, 589, 837
CaiI	CAGNNNCTG	1 cut(s)	629
CfoI	GCGC	1 cut(s)	33
Cfr10I	RCCGGY	1 cut(s)	222
Cfr13I	GGNCC	2 cut(s)	176, 177
ClaI	ATCGAT	1 cut(s)	463
CseI	GACGC	2 cut(s)	93, 761
Csp6I	GTAC	4 cut(s)	186, 321, 695, 712
CviQI	GTAC	4 cut(s)	186, 321, 695, 712
DdeI	CTNAG	3 cut(s)	20, 738, 806
DpnI	GATC	5 cut(s)	134, 309, 440, 466, 797
DpnII	GATC	5 cut(s)	132, 307, 438, 464, 795
EaeI	YGGCCR	1 cut(s)	157
Ecl136II	GAGCTC	3 cut(s)	66, 737, 886
Eco130I	CCWWGG	1 cut(s)	924
Eco24I	GRGCYC	4 cut(s)	68, 180, 739, 888
Eco32I	GATATC	1 cut(s)	353
Eco47III	AGCGCT	1 cut(s)	32
Eco53kI	GAGCTC	3 cut(s)	66, 737, 886
Eco57I	CTGAAG	2 cut(s)	279, 897
EcoICRI	GAGCTC	3 cut(s)	66, 737, 886
EcoO109I	RGGNCCY	1 cut(s)	177
EcoRII	CCWGG	2 cut(s)	159, 378
EcoRV	GATATC	1 cut(s)	353
EcoT14I	CCWWGG	1 cut(s)	924
EcoT38I	GRGCYC	4 cut(s)	68, 180, 739, 888
ErhI	CCWWGG	1 cut(s)	924
FalI	AAGNNNNNCTT	2 cut(s)	855, 887
FaqI	GGGAC	1 cut(s)	440
FblI	GTMKAC	1 cut(s)	766
Fnu4HI	GCNGC	2 cut(s)	97, 220
FokI	GGATG	3 cut(s)	216, 416, 713
FriOI	GRGCYC	4 cut(s)	68, 180, 739, 888
Fsp4HI	GCNGC	2 cut(s)	97, 220
GlaI	GCGC	1 cut(s)	32
GluI	GCNGC	2 cut(s)	97, 220
GsaI	CCCAGC	1 cut(s)	332
HaeII	RGCGCY	1 cut(s)	34
HaeIII	GGCC	3 cut(s)	159, 178, 591
HapII	CCGG	3 cut(s)	223, 234, 314
HgaI	GACGC	2 cut(s)	93, 761
HhaI	GCGC	1 cut(s)	33
Hin1I	GRCGYC	1 cut(s)	772
Hin6I	GCGC	1 cut(s)	31
HinP1I	GCGC	1 cut(s)	31
HinfI	GANTC	3 cut(s)	754, 780, 944
HpaII	CCGG	3 cut(s)	223, 234, 314
HphI	GGTGA	4 cut(s)	113, 131, 214, 314
Hpy166II	GTNNAC	4 cut(s)	8, 139, 767, 968
Hpy188I	TCNGA	5 cut(s)	109, 212, 443, 800, 983
Hpy188III	TCNNGA	2 cut(s)	416, 758
Hpy8I	GTNNAC	4 cut(s)	8, 139, 767, 968
Hpy99I	CGWCG	3 cut(s)	84, 87, 202
HpyAV	CCTTC	1 cut(s)	590
HpyCH4III	ACNGT	5 cut(s)	103, 190, 325, 490, 787
HpyCH4IV	ACGT	4 cut(s)	384, 558, 868, 964
HpyCH4V	TGCA	9 cut(s)	8, 96, 336, 543, 623, 725, 845, 931, 975
HpyF10VI	GCNNNNNNNGC	5 cut(s)	30, 93, 325, 620, 872
HpyF3I	CTNAG	3 cut(s)	20, 738, 806
HpySE526I	ACGT	4 cut(s)	384, 558, 868, 964
Hsp92I	GRCGYC	1 cut(s)	772
HspAI	GCGC	1 cut(s)	31
Kzo9I	GATC	5 cut(s)	132, 307, 438, 464, 795
LmnI	GCTCC	5 cut(s)	268, 747, 883, 891, 926
Lsp1109I	GCAGC	2 cut(s)	108, 206
LweI	GCATC	1 cut(s)	832
MaeII	ACGT	4 cut(s)	384, 558, 868, 964
MaeIII	GTNAC	1 cut(s)	225
MalI	GATC	5 cut(s)	134, 309, 440, 466, 797
MboI	GATC	5 cut(s)	132, 307, 438, 464, 795
MboII	GAAGA	4 cut(s)	82, 302, 459, 617
MfeI	CAATTG	1 cut(s)	171
MhlI	GDGCHC	6 cut(s)	10, 68, 180, 739, 888, 923
MluCI	AATT	5 cut(s)	171, 644, 847, 896, 977
MnlI	CCTC	2 cut(s)	136, 754
MroXI	GAANNNNTTC	1 cut(s)	411
MseI	TTAA	2 cut(s)	372, 1000
MslI	CAYNNNNRTG	1 cut(s)	144
MspI	CCGG	3 cut(s)	223, 234, 314
MspR9I	CCNGG	4 cut(s)	161, 234, 315, 380
MunI	CAATTG	1 cut(s)	171
Mva1269I	GAATGC	1 cut(s)	413
MvaI	CCWGG	2 cut(s)	161, 380
MwoI	GCNNNNNNNGC	5 cut(s)	30, 93, 325, 620, 872
NciI	CCSGG	2 cut(s)	234, 315
NcoI	CCATGG	1 cut(s)	924
NdeII	GATC	5 cut(s)	132, 307, 438, 464, 795
NlaIV	GGNNCC	2 cut(s)	178, 292
NmeAIII	GCCGAG	1 cut(s)	135
NspI	RCATGY	1 cut(s)	452
NspV	TTCGAA	1 cut(s)	470
PaeI	GCATGC	1 cut(s)	452
PctI	GAATGC	1 cut(s)	413
PdmI	GAANNNNTTC	1 cut(s)	411
PfeI	GAWTC	3 cut(s)	754, 780, 944
PflMI	CCANNNNNTGG	1 cut(s)	598
PfoI	TCCNGGA	1 cut(s)	232
PkrI	GCNGC	2 cut(s)	98, 221
Ple19I	CGATCG	1 cut(s)	135
Psp124BI	GAGCTC	3 cut(s)	68, 739, 888
Psp6I	CCWGG	2 cut(s)	159, 378
PspFI	CCCAGC	1 cut(s)	328
PspGI	CCWGG	2 cut(s)	159, 378
PspN4I	GGNNCC	2 cut(s)	178, 292
PspOMI	GGGCCC	1 cut(s)	176
PspPI	GGNCC	2 cut(s)	176, 177
PsrI	GAACNNNNNNTAC	2 cut(s)	687, 719
PstI	CTGCAG	2 cut(s)	98, 625
PstNI	CAGNNNCTG	1 cut(s)	629
PvuI	CGATCG	1 cut(s)	135
RsaI	GTAC	4 cut(s)	187, 322, 696, 713
RsaNI	GTAC	4 cut(s)	186, 321, 695, 712
RseI	CAYNNNNRTG	1 cut(s)	144
SacI	GAGCTC	3 cut(s)	68, 739, 888
SaqAI	TTAA	2 cut(s)	372, 1000
SatI	GCNGC	2 cut(s)	97, 220
Sau3AI	GATC	5 cut(s)	132, 307, 438, 464, 795
Sau96I	GGNCC	2 cut(s)	176, 177
ScrFI	CCNGG	4 cut(s)	161, 234, 315, 380
SduI	GDGCHC	6 cut(s)	10, 68, 180, 739, 888, 923
SfaNI	GCATC	1 cut(s)	832
SfcI	CTRYAG	3 cut(s)	94, 486, 621
SfuI	TTCGAA	1 cut(s)	470
SmiMI	CAYNNNNRTG	1 cut(s)	144
SmlI	CTYRAG	1 cut(s)	758
SmoI	CTYRAG	1 cut(s)	758
SphI	GCATGC	1 cut(s)	452
Sse9I	AATT	5 cut(s)	171, 644, 847, 896, 977
SsiI	CCGC	1 cut(s)	678
SstI	GAGCTC	3 cut(s)	68, 739, 888
StyD4I	CCNGG	4 cut(s)	159, 232, 313, 378
StyI	CCWWGG	1 cut(s)	924
TaaI	ACNGT	5 cut(s)	103, 190, 325, 490, 787
TaiI	ACGT	4 cut(s)	387, 561, 871, 967
TaqI	TCGA	2 cut(s)	463, 470
TasI	AATT	5 cut(s)	171, 644, 847, 896, 977
TatI	WGTACW	3 cut(s)	185, 694, 711
TfiI	GAWTC	3 cut(s)	754, 780, 944
Tru1I	TTAA	2 cut(s)	372, 1000
Tru9I	TTAA	2 cut(s)	372, 1000
TscAI	CASTG	4 cut(s)	46, 625, 792, 859
TseI	GCWGC	2 cut(s)	96, 219
TspDTI	ATGAA	5 cut(s)	106, 420, 629, 661, 820
TspGWI	ACGGA	2 cut(s)	734, 929
TspRI	CASTG	4 cut(s)	46, 625, 792, 859
Van91I	CCANNNNNTGG	1 cut(s)	598
VneI	GTGCAC	1 cut(s)	6
XapI	RAATTY	2 cut(s)	847, 977
XceI	RCATGY	1 cut(s)	452
XmiI	GTMKAC	1 cut(s)	766
XmnI	GAANNNNTTC	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.