Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0003927

Physical Location & Seq

Genomic Coordinates Forward (+)

5940655 .. 5943950

Gene Structure 3296 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG076500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGTGTGCACTATTCGAACTTAGCACCAAGCGCTTATTCACTGCCCTGAACAACCAGAGCTCTCTATCTCTGCGACGACGCTTCTTCTGCAGCACAGTTTCCGATGGCTTTATTCACCCCTCTGCGATCGTTCACCCCAATGCCGTTCTCGGCCAGGGTGTTTCAATTGGGCCCTTTTGTACTGTTGGGTCGTCGGTGAAGCTCGGAAATGGCTGCCGGTTACATCCCGGAAGCCATATTTTTGGGAATACTGAAGTTGGGGAGCGTTGTGTTTTGATGACTGGTGCCATTGTTGGTGATGATCTTCCGGGGCGTACTGTGCTGGGTTGCAATAATGTTATTGGATATCATGCTGTGGTTGGTGTTAAATGCCAGGACATGAAATACAAGTCAGGGGATGAATGCTTTCTTGATGTTGGGGACAACAATGAGATTAGAGAGCATGCTTCAATCCATCGATCTTCGAAGTCAAGTGATACTACAGTTATTGGGAATAACAATCTTATCATGGGTTCTTGCCATATTGCCCATGATTGCAAGGTTGGGAACAACGTTATTTTTGCGAATAATACCCTTCTGGCAGGCCATGTTGTGGTGGAAGATTATGCTCACACTGCAGGGGCTGTTGTTGTTCATCAATTCTGTCATGTTGGTTCTTTCGCTTTCATTGGCGGTGGCTCTGTGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006040 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008374 GO:0008780 GO:0009987 GO:0016740 GO:0016746 GO:0016747 GO:0019637 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901135 GO:2001289

KEGG Pathways

Metabolic & Signaling

ko00540 ko01100 ko01503 map00540 map01100 map01503

Pfam Domains

Protein Families

Acetyltransf_11 Hexapep

Protein Analysis

229

Amino Acids

24.24

Weight (kDa)

6.87

Isoelectric Point (pI)

32.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GMPPB_C	PF25087	39 - 101	1.5e-08	GMPPB C-terminal domain
Hexapep	PF00132	47 - 81	1.1e-08	Bacterial transferase hexapeptide (six repeats)
Hexapep	PF00132	161 - 194	1.1e-09	Bacterial transferase hexapeptide (six repeats)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003927)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29540 AT4G29540 AT4G29540 AT4G29540
fragaria_vesca	FvH4_1g22100 FvH4_1g22100 FvH4_1g22100 FvH4_1g22100 FvH4_1g22100 FvH4_1g22100
malus_domestica	MD02G1076200.v1.1 MD13G1273400.v1.1 MD15G1204600.v1.1 MD17G1181800.v1.1
prunus_persica	Prupe.7G212400_v2.0.a1 Prupe.7G212400_v2.0.a1 Prupe.7G212400_v2.0.a1 Prupe.7G212400_v2.0.a1 Prupe.7G212400_v2.0.a1 Prupe.7G212400_v2.0.a1
pyrus_communis	pycom02g06050 pycom15g18160
rosa_chinensis	RchiOBHm_Chr2g0093061
rosa_laevigata	RLG00000016364
rosa_multiflora	Rmu_sc0006865.1_g000004
rosa_roxburghii	Rroxscaffold_2G00148550
rosa_rugosa	Rorug02G0031900 Rorug02G0032000 Rorug02G0032100.1
rosa_samantha	Rh2AG077600 Rh2BG079000 Rh2CG081300 Rh2DG076500
rosa_wichuraiana	Rw2G006860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	284
AccB7I	CCANNNNNTGG	1 cut(s)	592
AciI	CCGC	1 cut(s)	672
AclI	AACGTT	1 cut(s)	552
AcoI	YGGCCR	1 cut(s)	151
AcuI	CTGAAG	1 cut(s)	273
AfaI	GTAC	2 cut(s)	181, 316
AfeI	AGCGCT	1 cut(s)	32
AfiI	CCNNNNNNNGG	1 cut(s)	592
AgsI	TTSAA	2 cut(s)	165, 450
AjnI	CCWGG	2 cut(s)	153, 372
AjuI	GAANNNNNNNTTGG	2 cut(s)	20, 52
AluBI	AGCT	2 cut(s)	60, 202
AluI	AGCT	2 cut(s)	60, 202
Alw21I	GWGCWC	2 cut(s)	10, 62
Alw44I	GTGCAC	1 cut(s)	6
AlwNI	CAGNNNCTG	1 cut(s)	623
Aor51HI	AGCGCT	1 cut(s)	32
AoxI	GGCC	3 cut(s)	151, 170, 583
ApaI	GGGCCC	1 cut(s)	174
ApaLI	GTGCAC	1 cut(s)	6
ApeKI	GCWGC	2 cut(s)	90, 213
Asp700I	GAANNNNTTC	1 cut(s)	405
AspLEI	GCGC	1 cut(s)	33
AspS9I	GGNCC	2 cut(s)	170, 171
AsuC2I	CCSGG	2 cut(s)	228, 309
AsuHPI	GGTGA	4 cut(s)	107, 125, 208, 308
AsuII	TTCGAA	2 cut(s)	15, 464
BaeGI	GKGCMC	2 cut(s)	10, 174
BaeI	ACNNNNGTAYC	2 cut(s)	468, 501
BanI	GGYRCC	1 cut(s)	284
BanII	GRGCYC	2 cut(s)	62, 174
Bbv12I	GWGCWC	2 cut(s)	10, 62
BbvI	GCAGC	2 cut(s)	102, 200
BccI	CCATC	2 cut(s)	98, 462
BceAI	ACGGC	1 cut(s)	128
BciT130I	CCWGG	2 cut(s)	155, 374
BcnI	CCSGG	2 cut(s)	228, 309
BfmI	CTRYAG	3 cut(s)	88, 480, 615
BfoI	RGCGCY	1 cut(s)	34
BisI	GCNGC	2 cut(s)	91, 214
BlsI	GCNGC	2 cut(s)	92, 215
Bme1390I	CCNGG	4 cut(s)	155, 228, 309, 374
BmgT120I	GGNCC	2 cut(s)	170, 171
BmiI	GGNNCC	2 cut(s)	172, 286
BmrFI	CCNGG	4 cut(s)	155, 228, 309, 374
Bpu14I	TTCGAA	2 cut(s)	15, 464
BpuMI	CCSGG	2 cut(s)	228, 309
Bsa29I	ATCGAT	1 cut(s)	457
BsaJI	CCNNGG	2 cut(s)	154, 308
Bsc4I	CCNNNNNNNGG	1 cut(s)	592
Bse118I	RCCGGY	1 cut(s)	216
Bse1I	ACTGG	1 cut(s)	286
BseBI	CCWGG	2 cut(s)	155, 374
BseCI	ATCGAT	1 cut(s)	457
BseDI	CCNNGG	2 cut(s)	154, 308
BseGI	GGATG	2 cut(s)	223, 403
BseLI	CCNNNNNNNGG	1 cut(s)	592
BseNI	ACTGG	1 cut(s)	286
BseSI	GKGCMC	2 cut(s)	10, 174
BseXI	GCAGC	2 cut(s)	102, 200
BseYI	CCCAGC	1 cut(s)	322
Bsh1285I	CGRYCG	1 cut(s)	129
BshFI	GGCC	3 cut(s)	153, 172, 585
BshNI	GGYRCC	1 cut(s)	284
BshVI	ATCGAT	1 cut(s)	457
BsiEI	CGRYCG	1 cut(s)	129
BsiHKAI	GWGCWC	2 cut(s)	10, 62
BsiSI	CCGG	3 cut(s)	217, 228, 308
BslFI	GGGAC	1 cut(s)	434
BslI	CCNNNNNNNGG	1 cut(s)	592
BsmFI	GGGAC	1 cut(s)	434
BsmI	GAATGC	1 cut(s)	407
BsnI	GGCC	3 cut(s)	153, 172, 585
Bsp119I	TTCGAA	2 cut(s)	15, 464
Bsp120I	GGGCCC	1 cut(s)	170
Bsp1286I	GDGCHC	3 cut(s)	10, 62, 174
Bsp143I	GATC	3 cut(s)	126, 301, 458
BspACI	CCGC	1 cut(s)	672
BspANI	GGCC	3 cut(s)	153, 172, 585
BspDI	ATCGAT	1 cut(s)	457
BspLI	GGNNCC	2 cut(s)	172, 286
BspMAI	CTGCAG	2 cut(s)	92, 619
BspT104I	TTCGAA	2 cut(s)	15, 464
BspT107I	GGYRCC	1 cut(s)	284
BsrFI	RCCGGY	1 cut(s)	216
BsrI	ACTGG	1 cut(s)	286
BssAI	RCCGGY	1 cut(s)	216
BssECI	CCNNGG	2 cut(s)	154, 308
BssMI	GATC	3 cut(s)	126, 301, 458
Bst2UI	CCWGG	2 cut(s)	155, 374
Bst4CI	ACNGT	4 cut(s)	97, 184, 319, 484
BstBI	TTCGAA	2 cut(s)	15, 464
BstC8I	GCNNGC	2 cut(s)	444, 583
BstDEI	CTNAG	1 cut(s)	20
BstF5I	GGATG	2 cut(s)	223, 403
BstH2I	RGCGCY	1 cut(s)	34
BstHHI	GCGC	1 cut(s)	33
BstKTI	GATC	3 cut(s)	129, 304, 461
BstMBI	GATC	3 cut(s)	126, 301, 458
BstMCI	CGRYCG	1 cut(s)	129
BstMWI	GCNNNNNNNGC	4 cut(s)	30, 87, 319, 614
BstNI	CCWGG	2 cut(s)	155, 374
BstNSI	RCATGY	1 cut(s)	446
BstSCI	CCNGG	4 cut(s)	153, 226, 307, 372
BstSFI	CTRYAG	3 cut(s)	88, 480, 615
BstSLI	GKGCMC	2 cut(s)	10, 174
BstV1I	GCAGC	2 cut(s)	102, 200
BstXI	CCANNNNNNTGG	1 cut(s)	242
Bsu15I	ATCGAT	1 cut(s)	457
BsuRI	GGCC	3 cut(s)	153, 172, 585
BsuTUI	ATCGAT	1 cut(s)	457
BtsCI	GGATG	2 cut(s)	223, 403
BtsI	GCAGTG	2 cut(s)	39, 612
BtsIMutI	CAGTG	2 cut(s)	39, 612
Cac8I	GCNNGC	2 cut(s)	444, 583
CaiI	CAGNNNCTG	1 cut(s)	623
CfoI	GCGC	1 cut(s)	33
Cfr10I	RCCGGY	1 cut(s)	216
Cfr13I	GGNCC	2 cut(s)	170, 171
ClaI	ATCGAT	1 cut(s)	457
CseI	GACGC	1 cut(s)	87
Csp6I	GTAC	2 cut(s)	180, 315
CviAII	CATG	7 cut(s)	350, 379, 443, 508, 530, 587, 647
CviQI	GTAC	2 cut(s)	180, 315
DdeI	CTNAG	1 cut(s)	20
DpnI	GATC	3 cut(s)	128, 303, 460
DpnII	GATC	3 cut(s)	126, 301, 458
EaeI	YGGCCR	1 cut(s)	151
Ecl136II	GAGCTC	1 cut(s)	60
Eco24I	GRGCYC	2 cut(s)	62, 174
Eco32I	GATATC	1 cut(s)	347
Eco47III	AGCGCT	1 cut(s)	32
Eco53kI	GAGCTC	1 cut(s)	60
Eco57I	CTGAAG	1 cut(s)	273
EcoICRI	GAGCTC	1 cut(s)	60
EcoO109I	RGGNCCY	1 cut(s)	171
EcoRII	CCWGG	2 cut(s)	153, 372
EcoRV	GATATC	1 cut(s)	347
EcoT38I	GRGCYC	2 cut(s)	62, 174
FaeI	CATG	7 cut(s)	353, 382, 446, 511, 533, 590, 650
FaqI	GGGAC	1 cut(s)	434
FatI	CATG	7 cut(s)	349, 378, 442, 507, 529, 586, 646
Fnu4HI	GCNGC	2 cut(s)	91, 214
FokI	GGATG	2 cut(s)	210, 410
FriOI	GRGCYC	2 cut(s)	62, 174
Fsp4HI	GCNGC	2 cut(s)	91, 214
GlaI	GCGC	1 cut(s)	32
GluI	GCNGC	2 cut(s)	91, 214
GsaI	CCCAGC	1 cut(s)	326
HaeII	RGCGCY	1 cut(s)	34
HaeIII	GGCC	3 cut(s)	153, 172, 585
HapII	CCGG	3 cut(s)	217, 228, 308
HgaI	GACGC	1 cut(s)	87
HhaI	GCGC	1 cut(s)	33
Hin1II	CATG	7 cut(s)	353, 382, 446, 511, 533, 590, 650
Hin6I	GCGC	1 cut(s)	31
HinP1I	GCGC	1 cut(s)	31
HpaII	CCGG	3 cut(s)	217, 228, 308
HphI	GGTGA	4 cut(s)	107, 125, 208, 308
Hpy166II	GTNNAC	2 cut(s)	8, 133
Hpy188I	TCNGA	2 cut(s)	103, 206
Hpy188III	TCNNGA	1 cut(s)	410
Hpy8I	GTNNAC	2 cut(s)	8, 133
Hpy99I	CGWCG	3 cut(s)	78, 81, 196
HpyAV	CCTTC	1 cut(s)	584
HpyCH4III	ACNGT	4 cut(s)	97, 184, 319, 484
HpyCH4IV	ACGT	1 cut(s)	552
HpyCH4V	TGCA	5 cut(s)	8, 90, 330, 537, 617
HpyF10VI	GCNNNNNNNGC	4 cut(s)	30, 87, 319, 614
HpyF3I	CTNAG	1 cut(s)	20
HpySE526I	ACGT	1 cut(s)	552
Hsp92II	CATG	7 cut(s)	353, 382, 446, 511, 533, 590, 650
HspAI	GCGC	1 cut(s)	31
Kzo9I	GATC	3 cut(s)	126, 301, 458
LmnI	GCTCC	1 cut(s)	262
Lsp1109I	GCAGC	2 cut(s)	102, 200
MaeII	ACGT	1 cut(s)	552
MaeIII	GTNAC	1 cut(s)	219
MalI	GATC	3 cut(s)	128, 303, 460
MboI	GATC	3 cut(s)	126, 301, 458
MboII	GAAGA	4 cut(s)	76, 296, 453, 611
MfeI	CAATTG	1 cut(s)	165
MhlI	GDGCHC	3 cut(s)	10, 62, 174
MluCI	AATT	2 cut(s)	165, 638
MnlI	CCTC	1 cut(s)	130
MroXI	GAANNNNTTC	1 cut(s)	405
MseI	TTAA	1 cut(s)	366
MslI	CAYNNNNRTG	1 cut(s)	138
MspI	CCGG	3 cut(s)	217, 228, 308
MspR9I	CCNGG	4 cut(s)	155, 228, 309, 374
MunI	CAATTG	1 cut(s)	165
Mva1269I	GAATGC	1 cut(s)	407
MvaI	CCWGG	2 cut(s)	155, 374
MwoI	GCNNNNNNNGC	4 cut(s)	30, 87, 319, 614
NciI	CCSGG	2 cut(s)	228, 309
NdeII	GATC	3 cut(s)	126, 301, 458
NlaIII	CATG	7 cut(s)	353, 382, 446, 511, 533, 590, 650
NlaIV	GGNNCC	2 cut(s)	172, 286
NmeAIII	GCCGAG	1 cut(s)	129
NspI	RCATGY	1 cut(s)	446
NspV	TTCGAA	2 cut(s)	15, 464
PaeI	GCATGC	1 cut(s)	446
PctI	GAATGC	1 cut(s)	407
PdmI	GAANNNNTTC	1 cut(s)	405
PflMI	CCANNNNNTGG	1 cut(s)	592
PfoI	TCCNGGA	1 cut(s)	226
PkrI	GCNGC	2 cut(s)	92, 215
Ple19I	CGATCG	1 cut(s)	129
Psp124BI	GAGCTC	1 cut(s)	62
Psp1406I	AACGTT	1 cut(s)	552
Psp6I	CCWGG	2 cut(s)	153, 372
PspFI	CCCAGC	1 cut(s)	322
PspGI	CCWGG	2 cut(s)	153, 372
PspN4I	GGNNCC	2 cut(s)	172, 286
PspOMI	GGGCCC	1 cut(s)	170
PspPI	GGNCC	2 cut(s)	170, 171
PstI	CTGCAG	2 cut(s)	92, 619
PstNI	CAGNNNCTG	1 cut(s)	623
PvuI	CGATCG	1 cut(s)	129
RsaI	GTAC	2 cut(s)	181, 316
RsaNI	GTAC	2 cut(s)	180, 315
RseI	CAYNNNNRTG	1 cut(s)	138
SacI	GAGCTC	1 cut(s)	62
SaqAI	TTAA	1 cut(s)	366
SatI	GCNGC	2 cut(s)	91, 214
Sau3AI	GATC	3 cut(s)	126, 301, 458
Sau96I	GGNCC	2 cut(s)	170, 171
ScrFI	CCNGG	4 cut(s)	155, 228, 309, 374
SduI	GDGCHC	3 cut(s)	10, 62, 174
SetI	ASST	4 cut(s)	62, 204, 543, 555
SfcI	CTRYAG	3 cut(s)	88, 480, 615
SfuI	TTCGAA	2 cut(s)	15, 464
SmiMI	CAYNNNNRTG	1 cut(s)	138
SphI	GCATGC	1 cut(s)	446
Sse9I	AATT	2 cut(s)	165, 638
SsiI	CCGC	1 cut(s)	672
SstI	GAGCTC	1 cut(s)	62
StyD4I	CCNGG	4 cut(s)	153, 226, 307, 372
TaaI	ACNGT	4 cut(s)	97, 184, 319, 484
TaiI	ACGT	1 cut(s)	555
TaqI	TCGA	3 cut(s)	15, 457, 464
TasI	AATT	2 cut(s)	165, 638
TatI	WGTACW	1 cut(s)	179
Tru1I	TTAA	1 cut(s)	366
Tru9I	TTAA	1 cut(s)	366
TscAI	CASTG	2 cut(s)	46, 619
TseI	GCWGC	2 cut(s)	90, 213
TspDTI	ATGAA	4 cut(s)	395, 414, 623, 655
TspRI	CASTG	2 cut(s)	46, 619
Van91I	CCANNNNNTGG	1 cut(s)	592
VneI	GTGCAC	1 cut(s)	6
XceI	RCATGY	1 cut(s)	446
XmnI	GAANNNNTTC	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.