Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0003927

Physical Location & Seq

Genomic Coordinates Reverse (-)

14049105 .. 14051895

Gene Structure 2791 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g22100.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGCGTGCACTACTATTCAAACTCAGCGCCAAGCGCTTGCTCAACAACCAGAGCTCTCTACGCTTCTCCTGCAACACAGTTTCCGATGCCGTCATTCACCCCTCTGCAATAGTTCACCCCAATGCCGTTCTCGGCCAGGGTATTTCAATTGGGCCCTTTTGTACTGTTGGGTCGTCCGTGAAGCTCGCAAATGGCTGCCGGTTACATCCCGGAAGCCATGTCTTTGGTAATACTCAACTTGGGGAGCGTTGCGTTTTGATGACTGGTGCCATTGTGGGTGATGAGATACCGGGGCGTACTGTGCTGGGTTGCAATAATGTTATTGGACACCATGCTGTGGTTGGTGTGAAATGCCAGGACATGAAATACAAGTCAGGGGATGAATGTTTTCTTGATGTTGGGGACAATAATGAGATCAGAGAGTATGCTTCAATTCATCGGTCTTCAAAGTCAAGTGATACTACAGTTATTGGGAATAACAATCTTATCATGGGTTCGTGCCATATCGCCCATGACTGCAAGGTTGGAAACAACATCATTCTTGCGAATAATACCCTTTTGGCAGGCCATGTTGTGGTGGAAGATTATGCTCACACTGCAGGGGCTGTTGTTGTTCATCAATTCTGTCATGTTGGTTCTTTCGCTTTCATTGGCGGTGGCTCTGTGATTGCACAGGATGTTCCAAAGTACATGATGGTTGCTGGAGAAAGAGCTCAGCTCCATGGTTTAAACCTTGAGGGTCTTCGGCGTCATGGATTCACAGTGGCAGAGATCAGAAGCCTTAGAACAGCTTACCAAAAGATATTCATGCCTGCTGATGCAAACTCCAGTGGTTTTGAAGCACGTCTTGCTGAAGTGGAGCTCCATGATAAATTGGCTCATATACCTGCTGTGTGCTCCATGGTGCAGTCTATCCGTGACTCTTTCAGAGAAAAAAGACGTGGACTGTGCAAATTCAGACATTGGAATAGCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006040 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008374 GO:0008780 GO:0009987 GO:0016740 GO:0016746 GO:0016747 GO:0019637 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901135 GO:2001289

KEGG Pathways

Metabolic & Signaling

ko00540 ko01100 ko01503 map00540 map01100 map01503

Pfam Domains

Protein Families

Acetyltransf_11 Hexapep

Protein Analysis

326

Amino Acids

35.14

Weight (kDa)

8.72

Isoelectric Point (pI)

39.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GMPPB_C	PF25087	33 - 115	4.6e-07	GMPPB C-terminal domain
Hexapep	PF00132	155 - 188	4.5e-08	Bacterial transferase hexapeptide (six repeats)
Acetyltransf_11	PF13720	226 - 297	1.7e-16	Udp N-acetylglucosamine O-acyltransferase; Domain 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003927)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29540 AT4G29540 AT4G29540 AT4G29540
fragaria_vesca	FvH4_1g22100 FvH4_1g22100 FvH4_1g22100 FvH4_1g22100 FvH4_1g22100 FvH4_1g22100
malus_domestica	MD02G1076200.v1.1 MD13G1273400.v1.1 MD15G1204600.v1.1 MD17G1181800.v1.1
prunus_persica	Prupe.7G212400_v2.0.a1 Prupe.7G212400_v2.0.a1 Prupe.7G212400_v2.0.a1 Prupe.7G212400_v2.0.a1 Prupe.7G212400_v2.0.a1 Prupe.7G212400_v2.0.a1
pyrus_communis	pycom02g06050 pycom15g18160
rosa_chinensis	RchiOBHm_Chr2g0093061
rosa_laevigata	RLG00000016364
rosa_multiflora	Rmu_sc0006865.1_g000004
rosa_roxburghii	Rroxscaffold_2G00148550
rosa_rugosa	Rorug02G0031900 Rorug02G0032000 Rorug02G0032100.1
rosa_samantha	Rh2AG077600 Rh2BG079000 Rh2CG081300 Rh2DG076500
rosa_wichuraiana	Rw2G006860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	895
AccB1I	GGYRCC	1 cut(s)	266
AccB7I	CCANNNNNTGG	2 cut(s)	337, 574
AciI	CCGC	1 cut(s)	654
AcoI	YGGCCR	1 cut(s)	133
AcsI	RAATTY	1 cut(s)	953
AcuI	CTGAAG	1 cut(s)	873
AcyI	GRCGYC	1 cut(s)	748
AfaI	GTAC	3 cut(s)	163, 298, 689
AfeI	AGCGCT	1 cut(s)	35
AfiI	CCNNNNNNNGG	2 cut(s)	337, 574
AgsI	TTSAA	5 cut(s)	19, 147, 432, 447, 839
AjiI	CACGTC	2 cut(s)	845, 941
AjnI	CCWGG	2 cut(s)	135, 354
AluBI	AGCT	7 cut(s)	54, 184, 713, 718, 791, 862, 972
AluI	AGCT	7 cut(s)	54, 184, 713, 718, 791, 862, 972
Alw21I	GWGCWC	5 cut(s)	10, 56, 715, 864, 899
Alw44I	GTGCAC	1 cut(s)	6
AlwNI	CAGNNNCTG	1 cut(s)	605
Aor51HI	AGCGCT	1 cut(s)	35
AoxI	GGCC	3 cut(s)	133, 152, 565
ApaI	GGGCCC	1 cut(s)	156
ApaLI	GTGCAC	1 cut(s)	6
ApeKI	GCWGC	1 cut(s)	195
ApoI	RAATTY	1 cut(s)	953
Asp700I	GAANNNNTTC	1 cut(s)	387
AspLEI	GCGC	2 cut(s)	29, 36
AspS9I	GGNCC	2 cut(s)	152, 153
AsuC2I	CCSGG	2 cut(s)	210, 291
AsuHPI	GGTGA	3 cut(s)	89, 107, 290
BaeGI	GKGCMC	2 cut(s)	10, 156
BaeI	ACNNNNGTAYC	2 cut(s)	450, 483
BanI	GGYRCC	1 cut(s)	266
BanII	GRGCYC	4 cut(s)	56, 156, 715, 864
BbsI	GAAGAC	2 cut(s)	435, 734
Bbv12I	GWGCWC	5 cut(s)	10, 56, 715, 864, 899
BbvI	GCAGC	1 cut(s)	182
BccI	CCATC	1 cut(s)	688
BceAI	ACGGC	2 cut(s)	74, 110
BciT130I	CCWGG	2 cut(s)	137, 356
BcnI	CCSGG	2 cut(s)	210, 291
BfmI	CTRYAG	2 cut(s)	462, 597
BfoI	RGCGCY	2 cut(s)	30, 37
BfuAI	ACCTGC	1 cut(s)	895
BisI	GCNGC	1 cut(s)	196
BlpI	GCTNAGC	1 cut(s)	714
BlsI	GCNGC	1 cut(s)	197
Bme1390I	CCNGG	4 cut(s)	137, 210, 291, 356
BmgBI	CACGTC	2 cut(s)	845, 941
BmgT120I	GGNCC	2 cut(s)	152, 153
BmiI	GGNNCC	2 cut(s)	154, 268
BmrFI	CCNGG	4 cut(s)	137, 210, 291, 356
BmsI	GCATC	2 cut(s)	76, 808
BpiI	GAAGAC	2 cut(s)	435, 734
BplI	GAGNNNNNCTC	2 cut(s)	702, 734
BpmI	CTGGAG	2 cut(s)	723, 811
Bpu1102I	GCTNAGC	1 cut(s)	714
BpuEI	CTTGAG	1 cut(s)	755
BpuMI	CCSGG	2 cut(s)	210, 291
BsaHI	GRCGYC	1 cut(s)	748
BsaJI	CCNNGG	4 cut(s)	136, 290, 721, 900
Bsc4I	CCNNNNNNNGG	2 cut(s)	337, 574
Bse118I	RCCGGY	1 cut(s)	198
Bse1I	ACTGG	2 cut(s)	268, 828
BseBI	CCWGG	2 cut(s)	137, 356
BseDI	CCNNGG	4 cut(s)	136, 290, 721, 900
BseGI	GGATG	3 cut(s)	205, 385, 682
BseLI	CCNNNNNNNGG	2 cut(s)	337, 574
BseMII	CTCAG	2 cut(s)	37, 728
BseNI	ACTGG	2 cut(s)	268, 828
BseSI	GKGCMC	2 cut(s)	10, 156
BseXI	GCAGC	1 cut(s)	182
BseYI	CCCAGC	1 cut(s)	304
BsgI	GTGCAG	1 cut(s)	926
BshFI	GGCC	3 cut(s)	135, 154, 567
BshNI	GGYRCC	1 cut(s)	266
BsiHKAI	GWGCWC	5 cut(s)	10, 56, 715, 864, 899
BsiSI	CCGG	3 cut(s)	199, 210, 290
BslFI	GGGAC	1 cut(s)	416
BslI	CCNNNNNNNGG	2 cut(s)	337, 574
BsmFI	GGGAC	1 cut(s)	416
BsnI	GGCC	3 cut(s)	135, 154, 567
Bsp120I	GGGCCC	1 cut(s)	152
Bsp1286I	GDGCHC	6 cut(s)	10, 56, 156, 715, 864, 899
Bsp143I	GATC	2 cut(s)	414, 771
Bsp1720I	GCTNAGC	1 cut(s)	714
Bsp19I	CCATGG	2 cut(s)	721, 900
BspACI	CCGC	1 cut(s)	654
BspANI	GGCC	3 cut(s)	135, 154, 567
BspCNI	CTCAG	2 cut(s)	36, 727
BspLI	GGNNCC	2 cut(s)	154, 268
BspMAI	CTGCAG	1 cut(s)	601
BspMI	ACCTGC	1 cut(s)	895
BspT107I	GGYRCC	1 cut(s)	266
BsrFI	RCCGGY	1 cut(s)	198
BsrI	ACTGG	2 cut(s)	268, 828
BssAI	RCCGGY	1 cut(s)	198
BssECI	CCNNGG	4 cut(s)	136, 290, 721, 900
BssMI	GATC	2 cut(s)	414, 771
BssNI	GRCGYC	1 cut(s)	748
BssT1I	CCWWGG	2 cut(s)	721, 900
Bst2UI	CCWGG	2 cut(s)	137, 356
Bst4CI	ACNGT	6 cut(s)	79, 166, 301, 466, 763, 948
BstACI	GRCGYC	1 cut(s)	748
BstAPI	GCANNNNNTGC	1 cut(s)	848
BstC8I	GCNNGC	5 cut(s)	6, 38, 186, 565, 813
BstDEI	CTNAG	3 cut(s)	23, 714, 782
BstDSI	CCRYGG	2 cut(s)	721, 900
BstF5I	GGATG	3 cut(s)	205, 385, 682
BstH2I	RGCGCY	2 cut(s)	30, 37
BstHHI	GCGC	2 cut(s)	29, 36
BstKTI	GATC	2 cut(s)	417, 774
BstMBI	GATC	2 cut(s)	414, 771
BstMWI	GCNNNNNNNGC	6 cut(s)	33, 60, 69, 301, 596, 848
BstNI	CCWGG	2 cut(s)	137, 356
BstSCI	CCNGG	4 cut(s)	135, 208, 289, 354
BstSFI	CTRYAG	2 cut(s)	462, 597
BstSLI	GKGCMC	2 cut(s)	10, 156
BstV1I	GCAGC	1 cut(s)	182
BstV2I	GAAGAC	2 cut(s)	435, 734
BstXI	CCANNNNNNTGG	1 cut(s)	224
BsuRI	GGCC	3 cut(s)	135, 154, 567
BtgI	CCRYGG	2 cut(s)	721, 900
BtrI	CACGTC	2 cut(s)	845, 941
BtsCI	GGATG	3 cut(s)	205, 385, 682
BtsI	GCAGTG	1 cut(s)	594
BtsIMutI	CAGTG	3 cut(s)	594, 768, 835
BveI	ACCTGC	1 cut(s)	895
Cac8I	GCNNGC	5 cut(s)	6, 38, 186, 565, 813
CaiI	CAGNNNCTG	1 cut(s)	605
CfoI	GCGC	2 cut(s)	29, 36
Cfr10I	RCCGGY	1 cut(s)	198
Cfr13I	GGNCC	2 cut(s)	152, 153
CseI	GACGC	1 cut(s)	737
Csp6I	GTAC	3 cut(s)	162, 297, 688
CviQI	GTAC	3 cut(s)	162, 297, 688
DdeI	CTNAG	3 cut(s)	23, 714, 782
DpnI	GATC	2 cut(s)	416, 773
DpnII	GATC	2 cut(s)	414, 771
DraI	TTTAAA	1 cut(s)	729
EaeI	YGGCCR	1 cut(s)	133
Ecl136II	GAGCTC	3 cut(s)	54, 713, 862
Eco130I	CCWWGG	2 cut(s)	721, 900
Eco24I	GRGCYC	4 cut(s)	56, 156, 715, 864
Eco47III	AGCGCT	1 cut(s)	35
Eco53kI	GAGCTC	3 cut(s)	54, 713, 862
Eco57I	CTGAAG	1 cut(s)	873
EcoICRI	GAGCTC	3 cut(s)	54, 713, 862
EcoO109I	RGGNCCY	1 cut(s)	153
EcoRII	CCWGG	2 cut(s)	135, 354
EcoT14I	CCWWGG	2 cut(s)	721, 900
EcoT38I	GRGCYC	4 cut(s)	56, 156, 715, 864
ErhI	CCWWGG	2 cut(s)	721, 900
FalI	AAGNNNNNCTT	2 cut(s)	831, 863
FaqI	GGGAC	1 cut(s)	416
Fnu4HI	GCNGC	1 cut(s)	196
FokI	GGATG	3 cut(s)	192, 392, 689
FriOI	GRGCYC	4 cut(s)	56, 156, 715, 864
Fsp4HI	GCNGC	1 cut(s)	196
GlaI	GCGC	2 cut(s)	28, 35
GluI	GCNGC	1 cut(s)	196
GsaI	CCCAGC	1 cut(s)	308
GsuI	CTGGAG	2 cut(s)	723, 811
HaeII	RGCGCY	2 cut(s)	30, 37
HaeIII	GGCC	3 cut(s)	135, 154, 567
HapII	CCGG	3 cut(s)	199, 210, 290
HgaI	GACGC	1 cut(s)	737
HhaI	GCGC	2 cut(s)	29, 36
Hin1I	GRCGYC	1 cut(s)	748
Hin6I	GCGC	2 cut(s)	27, 34
HinP1I	GCGC	2 cut(s)	27, 34
HinfI	GANTC	2 cut(s)	756, 920
HpaII	CCGG	3 cut(s)	199, 210, 290
HphI	GGTGA	3 cut(s)	89, 107, 290
Hpy166II	GTNNAC	3 cut(s)	8, 115, 944
Hpy188I	TCNGA	5 cut(s)	85, 419, 776, 929, 959
Hpy188III	TCNNGA	1 cut(s)	392
Hpy8I	GTNNAC	3 cut(s)	8, 115, 944
HpyCH4III	ACNGT	6 cut(s)	79, 166, 301, 466, 763, 948
HpyCH4IV	ACGT	2 cut(s)	844, 940
HpyF10VI	GCNNNNNNNGC	6 cut(s)	33, 60, 69, 301, 596, 848
HpyF3I	CTNAG	3 cut(s)	23, 714, 782
HpySE526I	ACGT	2 cut(s)	844, 940
Hsp92I	GRCGYC	1 cut(s)	748
HspAI	GCGC	2 cut(s)	27, 34
Kzo9I	GATC	2 cut(s)	414, 771
LmnI	GCTCC	5 cut(s)	244, 723, 859, 867, 902
Lsp1109I	GCAGC	1 cut(s)	182
LweI	GCATC	2 cut(s)	76, 808
MaeII	ACGT	2 cut(s)	844, 940
MaeIII	GTNAC	2 cut(s)	201, 917
MalI	GATC	2 cut(s)	416, 773
MboI	GATC	2 cut(s)	414, 771
MboII	GAAGA	3 cut(s)	435, 593, 734
MfeI	CAATTG	1 cut(s)	147
MhlI	GDGCHC	6 cut(s)	10, 56, 156, 715, 864, 899
MluCI	AATT	5 cut(s)	147, 432, 620, 872, 953
MlyI	GAGTC	1 cut(s)	914
MmeI	TCCRAC	1 cut(s)	505
MnlI	CCTC	2 cut(s)	112, 730
MroXI	GAANNNNTTC	1 cut(s)	387
MseI	TTAA	2 cut(s)	728, 976
MslI	CAYNNNNRTG	1 cut(s)	120
MspI	CCGG	3 cut(s)	199, 210, 290
MspR9I	CCNGG	4 cut(s)	137, 210, 291, 356
MssI	GTTTAAAC	1 cut(s)	729
MunI	CAATTG	1 cut(s)	147
MvaI	CCWGG	2 cut(s)	137, 356
MwoI	GCNNNNNNNGC	6 cut(s)	33, 60, 69, 301, 596, 848
NciI	CCSGG	2 cut(s)	210, 291
NcoI	CCATGG	2 cut(s)	721, 900
NdeII	GATC	2 cut(s)	414, 771
NlaIV	GGNNCC	2 cut(s)	154, 268
NmeAIII	GCCGAG	1 cut(s)	111
NmuCI	GTSAC	1 cut(s)	917
PdmI	GAANNNNTTC	1 cut(s)	387
PfeI	GAWTC	1 cut(s)	756
PflMI	CCANNNNNTGG	2 cut(s)	337, 574
PfoI	TCCNGGA	1 cut(s)	208
PkrI	GCNGC	1 cut(s)	197
PleI	GAGTC	1 cut(s)	914
PmeI	GTTTAAAC	1 cut(s)	729
PpsI	GAGTC	1 cut(s)	914
Psp124BI	GAGCTC	3 cut(s)	56, 715, 864
Psp6I	CCWGG	2 cut(s)	135, 354
PspFI	CCCAGC	1 cut(s)	304
PspGI	CCWGG	2 cut(s)	135, 354
PspN4I	GGNNCC	2 cut(s)	154, 268
PspOMI	GGGCCC	1 cut(s)	152
PspPI	GGNCC	2 cut(s)	152, 153
PstI	CTGCAG	1 cut(s)	601
PstNI	CAGNNNCTG	1 cut(s)	605
RsaI	GTAC	3 cut(s)	163, 298, 689
RsaNI	GTAC	3 cut(s)	162, 297, 688
RseI	CAYNNNNRTG	1 cut(s)	120
SacI	GAGCTC	3 cut(s)	56, 715, 864
SaqAI	TTAA	2 cut(s)	728, 976
SatI	GCNGC	1 cut(s)	196
Sau3AI	GATC	2 cut(s)	414, 771
Sau96I	GGNCC	2 cut(s)	152, 153
SchI	GAGTC	1 cut(s)	914
ScrFI	CCNGG	4 cut(s)	137, 210, 291, 356
SduI	GDGCHC	6 cut(s)	10, 56, 156, 715, 864, 899
SfaNI	GCATC	2 cut(s)	76, 808
SfcI	CTRYAG	2 cut(s)	462, 597
SmiMI	CAYNNNNRTG	1 cut(s)	120
SmlI	CTYRAG	1 cut(s)	734
SmoI	CTYRAG	1 cut(s)	734
Sse9I	AATT	5 cut(s)	147, 432, 620, 872, 953
SsiI	CCGC	1 cut(s)	654
SstI	GAGCTC	3 cut(s)	56, 715, 864
StyD4I	CCNGG	4 cut(s)	135, 208, 289, 354
StyI	CCWWGG	2 cut(s)	721, 900
TaaI	ACNGT	6 cut(s)	79, 166, 301, 466, 763, 948
TaiI	ACGT	2 cut(s)	847, 943
TaqII	GACCGA	1 cut(s)	429
TasI	AATT	5 cut(s)	147, 432, 620, 872, 953
TatI	WGTACW	2 cut(s)	161, 687
TfiI	GAWTC	1 cut(s)	756
Tru1I	TTAA	2 cut(s)	728, 976
Tru9I	TTAA	2 cut(s)	728, 976
TscAI	CASTG	3 cut(s)	601, 768, 835
TseFI	GTSAC	1 cut(s)	917
TseI	GCWGC	1 cut(s)	195
Tsp45I	GTSAC	1 cut(s)	917
TspDTI	ATGAA	6 cut(s)	377, 396, 425, 605, 637, 796
TspGWI	ACGGA	2 cut(s)	166, 905
TspRI	CASTG	3 cut(s)	601, 768, 835
Van91I	CCANNNNNTGG	2 cut(s)	337, 574
VneI	GTGCAC	1 cut(s)	6
XapI	RAATTY	1 cut(s)	953
XcmI	CCANNNNNNNNNTGG	1 cut(s)	338
XmnI	GAANNNNTTC	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.