Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0003927

Physical Location & Seq

Genomic Coordinates Forward (+)

21268095 .. 21268388

Gene Structure 294 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1181800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGTTGGGAATATCAATCTTATCATGGGATCTTGTCATATTGCCCACGATTGCAAGATCGGAAACAACATCATATAATACATTGTTGGCATGCCATGTTGTGGTGGAAGATTATGCTCACACTGCAAGGGCTGTTGTCGTTCATCAATTCTGCCATGTTGGCTATTTCTCATTTATTGGTGGTGGTTCTGTGATGGCACAGGATGTTCCAAAGTACATGATGGTTGCGGGAGAAAGAGCTGTGCTTCGTGGTCTTGGTCTGAACATACCCAACAAATTTTCGATTGTGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006040 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008374 GO:0008780 GO:0009987 GO:0016740 GO:0016746 GO:0016747 GO:0019637 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901135 GO:2001289

KEGG Pathways

Metabolic & Signaling

ko00540 ko01100 ko01503 map00540 map01100 map01503

Pfam Domains

Protein Families

Acetyltransf_11 Hexapep

Protein Analysis

98

Amino Acids

10.58

Weight (kDa)

6.89

Isoelectric Point (pI)

50.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003927)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29540 AT4G29540 AT4G29540 AT4G29540
fragaria_vesca	FvH4_1g22100 FvH4_1g22100 FvH4_1g22100 FvH4_1g22100 FvH4_1g22100 FvH4_1g22100
malus_domestica	MD02G1076200.v1.1 MD13G1273400.v1.1 MD15G1204600.v1.1 MD17G1181800.v1.1
prunus_persica	Prupe.7G212400_v2.0.a1 Prupe.7G212400_v2.0.a1 Prupe.7G212400_v2.0.a1 Prupe.7G212400_v2.0.a1 Prupe.7G212400_v2.0.a1 Prupe.7G212400_v2.0.a1
pyrus_communis	pycom02g06050 pycom15g18160
rosa_chinensis	RchiOBHm_Chr2g0093061
rosa_laevigata	RLG00000016364
rosa_multiflora	Rmu_sc0006865.1_g000004
rosa_roxburghii	Rroxscaffold_2G00148550
rosa_rugosa	Rorug02G0031900 Rorug02G0032000 Rorug02G0032100.1
rosa_samantha	Rh2AG077600 Rh2BG079000 Rh2CG081300 Rh2DG076500
rosa_wichuraiana	Rw2G006860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	100
AciI	CCGC	1 cut(s)	227
AclWI	GGATC	1 cut(s)	36
AcsI	RAATTY	1 cut(s)	275
AfaI	GTAC	1 cut(s)	215
AfiI	CCNNNNNNNGG	1 cut(s)	100
AluBI	AGCT	1 cut(s)	239
AluI	AGCT	1 cut(s)	239
AlwI	GGATC	1 cut(s)	36
ApoI	RAATTY	1 cut(s)	275
BccI	CCATC	2 cut(s)	187, 214
BglI	GCCNNNNNGGC	1 cut(s)	159
Bsc4I	CCNNNNNNNGG	1 cut(s)	100
BseGI	GGATG	1 cut(s)	208
BseLI	CCNNNNNNNGG	1 cut(s)	100
BslI	CCNNNNNNNGG	1 cut(s)	100
Bsp143I	GATC	2 cut(s)	28, 56
BspACI	CCGC	1 cut(s)	227
BspPI	GGATC	1 cut(s)	36
BssMI	GATC	2 cut(s)	28, 56
BstC8I	GCNNGC	1 cut(s)	91
BstF5I	GGATG	1 cut(s)	208
BstKTI	GATC	2 cut(s)	31, 59
BstMBI	GATC	2 cut(s)	28, 56
BstMWI	GCNNNNNNNGC	2 cut(s)	122, 159
BstNSI	RCATGY	1 cut(s)	93
BstX2I	RGATCY	1 cut(s)	28
BstYI	RGATCY	1 cut(s)	28
BtsCI	GGATG	1 cut(s)	208
BtsI	GCAGTG	1 cut(s)	120
BtsIMutI	CAGTG	1 cut(s)	120
Cac8I	GCNNGC	1 cut(s)	91
Csp6I	GTAC	1 cut(s)	214
CviAII	CATG	5 cut(s)	24, 90, 95, 155, 217
CviJI	RGCY	3 cut(s)	131, 162, 239
CviKI_1	RGCY	3 cut(s)	131, 162, 239
CviQI	GTAC	1 cut(s)	214
DpnI	GATC	2 cut(s)	30, 58
DpnII	GATC	2 cut(s)	28, 56
FaeI	CATG	5 cut(s)	27, 93, 98, 158, 220
FatI	CATG	5 cut(s)	23, 89, 94, 154, 216
FauI	CCCGC	1 cut(s)	220
FokI	GGATG	1 cut(s)	215
Hin1II	CATG	5 cut(s)	27, 93, 98, 158, 220
Hpy166II	GTNNAC	1 cut(s)	289
Hpy188I	TCNGA	2 cut(s)	61, 261
Hpy8I	GTNNAC	1 cut(s)	289
HpyCH4V	TGCA	2 cut(s)	53, 125
HpyF10VI	GCNNNNNNNGC	2 cut(s)	122, 159
Hsp92II	CATG	5 cut(s)	27, 93, 98, 158, 220
Kzo9I	GATC	2 cut(s)	28, 56
LpnPI	CCDG	1 cut(s)	185
MalI	GATC	2 cut(s)	30, 58
MboI	GATC	2 cut(s)	28, 56
MboII	GAAGA	1 cut(s)	119
MflI	RGATCY	1 cut(s)	28
MluCI	AATT	2 cut(s)	146, 275
MwoI	GCNNNNNNNGC	2 cut(s)	122, 159
NdeII	GATC	2 cut(s)	28, 56
NlaIII	CATG	5 cut(s)	27, 93, 98, 158, 220
NspI	RCATGY	1 cut(s)	93
PaeI	GCATGC	1 cut(s)	93
PflMI	CCANNNNNTGG	1 cut(s)	100
PsuI	RGATCY	1 cut(s)	28
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
Sau3AI	GATC	2 cut(s)	28, 56
SetI	ASST	1 cut(s)	241
SphI	GCATGC	1 cut(s)	93
Sse9I	AATT	2 cut(s)	146, 275
SsiI	CCGC	1 cut(s)	227
TaqI	TCGA	1 cut(s)	281
TasI	AATT	2 cut(s)	146, 275
TatI	WGTACW	1 cut(s)	213
TscAI	CASTG	1 cut(s)	127
TspDTI	ATGAA	1 cut(s)	131
TspRI	CASTG	1 cut(s)	127
Van91I	CCANNNNNTGG	1 cut(s)	100
XapI	RAATTY	1 cut(s)	275
XceI	RCATGY	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.