Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007355

Physical Location & Seq

Genomic Coordinates Reverse (-)

14511962 .. 14514588

Gene Structure 2627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G29590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGTCAAAAACGGCTAATTTTCTCAGCCTGAGATCCAATCCTCTACCTCCGATTTTCTCCTCCACCGGAAACTCTCCTTTCCTCCGAGCTTCCTCGGCTCTGAATCTTCCGACAACTGCTTCGAAACCTTTCCACAGTTGGATTCGTGCTTCTTCACGTCGCCGGTTGGTTCTCGGTGGTTTTGGCGGCGCTTCTTTGTGGATGAACAACAATATGTCCGGTAAATTTGGCGGTAAATCTTTCATTGCTTCCGCTAGGCAGACCAATCCTTCTCCCGTCGAACAGGCGTTGAATAAGGTGGATTGGCCAGAGACTTTCCCTTTCAAAGAAGAAGATTTCCAGAGATACGATGAGTCGTCTGATTCAACATTCTACGAAGCTCCAAGGTTTGTGACACACATTGATGATCCAGCTATAGCTGCATTGACAAAGTATTACTCCAAGGTTTTGCCTCAGAGCGATACTCCAGGAGTGAGCATACTCGATATGTGTAGCAGTTGGGTCAGTCATTATCCACCGGGGTATAGGCAAGAACGAATAGTTGGAATGGGTATGAATGAAGAAGAGCTTAAGCGAAATCCGGTTCTCACCGAGTACATAGTCCAAGACTTAAATCTCAATTCAAATCTGCCTTTTGAAGACAATTCTTTCCAAGTTATAACCAATGTGGTAAGTGTGGATTATCTTACAAAGCCGCTTGAAGTGTTCAAGGAAATGAACAGAATCCTTAAGCCCGGAGGACTCGCTCTAATGAGCTTCTCGAACCGTTGCTTCTTTACTAAAGCAATCTCGATATGGACATCAACTGGCGACGCAGATCATGCTCTCATTGTTGGATCATACTTTCACTACGCCGGAGGATTTGAAGCTCCTCAGGCCGTTGATATATCTCCAAATCCAGGGCGTTCAGATCCTATGTACGTTGTTTACTCTAGAAAACTCCCCATGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11

Protein Analysis

317

Amino Acids

35.37

Weight (kDa)

6.97

Isoelectric Point (pI)

55.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_11	PF08241	188 - 250	1.6e-09	Methyltransferase domain
Methyltransf_25	PF13649	189 - 247	7.3e-06	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29590
fragaria_vesca	FvH4_1g07220 FvH4_1g07220 FvH4_1g07220 FvH4_1g07220 FvH4_1g07220 FvH4_1g07220 FvH4_2g04400
malus_domestica	MD02G1076700.v1.1 MD15G1205400.v1.1
prunus_persica	Prupe.7G211700_v2.0.a1 Prupe.7G211700_v2.0.a1 Prupe.7G211700_v2.0.a1
pyrus_communis	pycom02g06110 pycom15g18220
rosa_chinensis	RchiOBHm_Chr2g0093121
rosa_laevigata	RLG00000016370
rosa_multiflora	Rmu_sc0006865.1_g000012
rosa_roxburghii	Rroxscaffold_2G00148490
rosa_rugosa	Rorug02G0032900 Rorug02G0033000
rosa_samantha	Rh2BG079900 Rh2CG082100 Rh2DG077200
rosa_wichuraiana	Rw2G006800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	659
AciI	CCGC	4 cut(s)	186, 231, 252, 695
AclWI	GGATC	4 cut(s)	27, 401, 844, 905
AcoI	YGGCCR	1 cut(s)	305
AcsI	RAATTY	1 cut(s)	224
AfaI	GTAC	2 cut(s)	596, 920
AfiI	CCNNNNNNNGG	1 cut(s)	899
AflII	CTTAAG	2 cut(s)	569, 728
AgsI	TTSAA	8 cut(s)	292, 325, 366, 624, 638, 701, 709, 866
AjiI	CACGTC	1 cut(s)	158
AjnI	CCWGG	2 cut(s)	466, 898
AjuI	GAANNNNNNNTTGG	2 cut(s)	525, 557
AluBI	AGCT	7 cut(s)	89, 380, 413, 419, 568, 756, 869
AluI	AGCT	7 cut(s)	89, 380, 413, 419, 568, 756, 869
Alw26I	GTCTC	1 cut(s)	305
AlwI	GGATC	4 cut(s)	27, 401, 844, 905
AoxI	GGCC	2 cut(s)	305, 876
ApeKI	GCWGC	1 cut(s)	419
ApoI	RAATTY	1 cut(s)	224
ArsI	GACNNNNNNTTYG	2 cut(s)	103, 135
Asp700I	GAANNNNTTC	1 cut(s)	128
AspLEI	GCGC	1 cut(s)	191
AsuC2I	CCSGG	2 cut(s)	519, 735
AsuHPI	GGTGA	1 cut(s)	580
AsuII	TTCGAA	1 cut(s)	122
AxyI	CCTNAGG	1 cut(s)	873
BalI	TGGCCA	1 cut(s)	307
BbsI	GAAGAC	1 cut(s)	645
BbvI	GCAGC	1 cut(s)	406
BceAI	ACGGC	2 cut(s)	27, 863
BciT130I	CCWGG	2 cut(s)	468, 900
BcnI	CCSGG	2 cut(s)	519, 735
BcoDI	GTCTC	1 cut(s)	305
BfaI	CTAG	2 cut(s)	255, 933
BfmI	CTRYAG	1 cut(s)	414
BfoI	RGCGCY	1 cut(s)	192
BfrI	CTTAAG	2 cut(s)	569, 728
BisI	GCNGC	3 cut(s)	187, 420, 695
BlsI	GCNGC	3 cut(s)	188, 421, 696
Bme1390I	CCNGG	4 cut(s)	468, 519, 735, 900
BmgBI	CACGTC	1 cut(s)	158
BmrFI	CCNGG	4 cut(s)	468, 519, 735, 900
BpiI	GAAGAC	1 cut(s)	645
BplI	GAGNNNNNCTC	2 cut(s)	448, 480
BpmI	CTGGAG	1 cut(s)	450
Bpu14I	TTCGAA	1 cut(s)	122
BpuMI	CCSGG	2 cut(s)	519, 735
BsaJI	CCNNGG	6 cut(s)	93, 383, 441, 518, 899, 945
BsaWI	WCCGGW	3 cut(s)	65, 218, 580
Bsc4I	CCNNNNNNNGG	1 cut(s)	899
Bse118I	RCCGGY	1 cut(s)	162
Bse1I	ACTGG	1 cut(s)	811
Bse21I	CCTNAGG	1 cut(s)	873
Bse3DI	GCAATG	1 cut(s)	243
BseBI	CCWGG	2 cut(s)	468, 900
BseDI	CCNNGG	6 cut(s)	93, 383, 441, 518, 899, 945
BseGI	GGATG	1 cut(s)	207
BseLI	CCNNNNNNNGG	1 cut(s)	899
BseMI	GCAATG	1 cut(s)	243
BseMII	CTCAG	4 cut(s)	20, 37, 467, 887
BseNI	ACTGG	1 cut(s)	811
BseRI	GAGGAG	2 cut(s)	49, 861
BseXI	GCAGC	1 cut(s)	406
BshFI	GGCC	2 cut(s)	307, 878
BsiSI	CCGG	7 cut(s)	66, 163, 219, 518, 581, 735, 855
BslI	CCNNNNNNNGG	1 cut(s)	899
BsmAI	GTCTC	1 cut(s)	305
BsnI	GGCC	2 cut(s)	307, 878
Bsp119I	TTCGAA	1 cut(s)	122
Bsp143I	GATC	5 cut(s)	32, 406, 817, 836, 910
Bsp19I	CCATGG	1 cut(s)	945
BspACI	CCGC	4 cut(s)	186, 231, 252, 695
BspANI	GGCC	2 cut(s)	307, 878
BspCNI	CTCAG	4 cut(s)	21, 36, 466, 886
BspPI	GGATC	4 cut(s)	27, 401, 844, 905
BspQI	GCTCTTC	1 cut(s)	558
BspT104I	TTCGAA	1 cut(s)	122
BspTI	CTTAAG	2 cut(s)	569, 728
BsrDI	GCAATG	1 cut(s)	243
BsrFI	RCCGGY	1 cut(s)	162
BsrI	ACTGG	1 cut(s)	811
BssAI	RCCGGY	1 cut(s)	162
BssECI	CCNNGG	6 cut(s)	93, 383, 441, 518, 899, 945
BssMI	GATC	5 cut(s)	32, 406, 817, 836, 910
BssT1I	CCWWGG	3 cut(s)	383, 441, 945
Bst2UI	CCWGG	2 cut(s)	468, 900
Bst4CI	ACNGT	2 cut(s)	137, 767
Bst6I	CTCTTC	1 cut(s)	558
BstAFI	CTTAAG	2 cut(s)	569, 728
BstAPI	GCANNNNNTGC	1 cut(s)	821
BstBI	TTCGAA	1 cut(s)	122
BstDEI	CTNAG	4 cut(s)	23, 29, 453, 873
BstDSI	CCRYGG	1 cut(s)	945
BstF5I	GGATG	1 cut(s)	207
BstH2I	RGCGCY	1 cut(s)	192
BstHHI	GCGC	1 cut(s)	191
BstKTI	GATC	5 cut(s)	35, 409, 820, 839, 913
BstMAI	GTCTC	1 cut(s)	305
BstMBI	GATC	5 cut(s)	32, 406, 817, 836, 910
BstMWI	GCNNNNNNNGC	4 cut(s)	95, 419, 821, 875
BstNI	CCWGG	2 cut(s)	468, 900
BstSCI	CCNGG	4 cut(s)	466, 517, 733, 898
BstSFI	CTRYAG	1 cut(s)	414
BstV1I	GCAGC	1 cut(s)	406
BstV2I	GAAGAC	1 cut(s)	645
BstX2I	RGATCY	2 cut(s)	32, 910
BstYI	RGATCY	2 cut(s)	32, 910
Bsu36I	CCTNAGG	1 cut(s)	873
BsuRI	GGCC	2 cut(s)	307, 878
BtgI	CCRYGG	1 cut(s)	945
BtrI	CACGTC	1 cut(s)	158
BtsCI	GGATG	1 cut(s)	207
CfoI	GCGC	1 cut(s)	191
Cfr10I	RCCGGY	1 cut(s)	162
CseI	GACGC	1 cut(s)	821
Csp6I	GTAC	2 cut(s)	595, 919
CviAII	CATG	2 cut(s)	821, 946
CviQI	GTAC	2 cut(s)	595, 919
DdeI	CTNAG	4 cut(s)	23, 29, 453, 873
DpnI	GATC	5 cut(s)	34, 408, 819, 838, 912
DpnII	GATC	5 cut(s)	32, 406, 817, 836, 910
EaeI	YGGCCR	1 cut(s)	305
Eam1104I	CTCTTC	1 cut(s)	558
EarI	CTCTTC	1 cut(s)	558
Eco130I	CCWWGG	3 cut(s)	383, 441, 945
Eco81I	CCTNAGG	1 cut(s)	873
EcoRII	CCWGG	2 cut(s)	466, 898
EcoT14I	CCWWGG	3 cut(s)	383, 441, 945
ErhI	CCWWGG	3 cut(s)	383, 441, 945
FaeI	CATG	2 cut(s)	824, 949
FalI	AAGNNNNNCTT	2 cut(s)	552, 584
FatI	CATG	2 cut(s)	820, 945
Fnu4HI	GCNGC	3 cut(s)	187, 420, 695
FokI	GGATG	1 cut(s)	214
Fsp4HI	GCNGC	3 cut(s)	187, 420, 695
FspBI	CTAG	2 cut(s)	255, 933
GlaI	GCGC	1 cut(s)	190
GluI	GCNGC	3 cut(s)	187, 420, 695
GsuI	CTGGAG	1 cut(s)	450
HaeII	RGCGCY	1 cut(s)	192
HaeIII	GGCC	2 cut(s)	307, 878
HapII	CCGG	7 cut(s)	66, 163, 219, 518, 581, 735, 855
HgaI	GACGC	1 cut(s)	821
HhaI	GCGC	1 cut(s)	191
Hin1II	CATG	2 cut(s)	824, 949
Hin6I	GCGC	1 cut(s)	189
HinP1I	GCGC	1 cut(s)	189
HinfI	GANTC	6 cut(s)	103, 142, 353, 362, 723, 741
HpaII	CCGG	7 cut(s)	66, 163, 219, 518, 581, 735, 855
HphI	GGTGA	1 cut(s)	580
Hpy166II	GTNNAC	1 cut(s)	928
Hpy188I	TCNGA	7 cut(s)	51, 86, 102, 111, 361, 456, 910
Hpy188III	TCNNGA	4 cut(s)	340, 760, 790, 933
Hpy8I	GTNNAC	1 cut(s)	928
Hpy99I	CGWCG	3 cut(s)	162, 281, 815
HpyAV	CCTTC	1 cut(s)	279
HpyCH4III	ACNGT	2 cut(s)	137, 767
HpyCH4IV	ACGT	2 cut(s)	157, 921
HpyCH4V	TGCA	1 cut(s)	422
HpyF10VI	GCNNNNNNNGC	4 cut(s)	95, 419, 821, 875
HpyF3I	CTNAG	4 cut(s)	23, 29, 453, 873
HpySE526I	ACGT	2 cut(s)	157, 921
Hsp92II	CATG	2 cut(s)	824, 949
HspAI	GCGC	1 cut(s)	189
Kzo9I	GATC	5 cut(s)	32, 406, 817, 836, 910
LguI	GCTCTTC	1 cut(s)	558
LmnI	GCTCC	2 cut(s)	385, 874
Lsp1109I	GCAGC	1 cut(s)	406
MaeI	CTAG	2 cut(s)	255, 933
MaeII	ACGT	2 cut(s)	157, 921
MaeIII	GTNAC	1 cut(s)	391
MalI	GATC	5 cut(s)	34, 408, 819, 838, 912
MboI	GATC	5 cut(s)	32, 406, 817, 836, 910
MboII	GAAGA	7 cut(s)	98, 144, 341, 344, 572, 575, 650
MflI	RGATCY	2 cut(s)	32, 910
MlsI	TGGCCA	1 cut(s)	307
MluCI	AATT	4 cut(s)	16, 224, 619, 643
MluNI	TGGCCA	1 cut(s)	307
MlyI	GAGTC	2 cut(s)	362, 735
MmeI	TCCRAC	4 cut(s)	119, 134, 523, 814
MnlI	CCTC	9 cut(s)	51, 57, 70, 92, 103, 462, 731, 851, 882
Mox20I	TGGCCA	1 cut(s)	307
MroXI	GAANNNNTTC	1 cut(s)	128
MscI	TGGCCA	1 cut(s)	307
MseI	TTAA	4 cut(s)	570, 611, 729, 952
MslI	CAYNNNNRTG	1 cut(s)	402
Msp20I	TGGCCA	1 cut(s)	307
MspCI	CTTAAG	2 cut(s)	569, 728
MspI	CCGG	7 cut(s)	66, 163, 219, 518, 581, 735, 855
MspR9I	CCNGG	4 cut(s)	468, 519, 735, 900
MvaI	CCWGG	2 cut(s)	468, 900
MwoI	GCNNNNNNNGC	4 cut(s)	95, 419, 821, 875
NciI	CCSGG	2 cut(s)	519, 735
NcoI	CCATGG	1 cut(s)	945
NdeII	GATC	5 cut(s)	32, 406, 817, 836, 910
NlaIII	CATG	2 cut(s)	824, 949
NmeAIII	GCCGAG	1 cut(s)	74
NmuCI	GTSAC	1 cut(s)	391
NspV	TTCGAA	1 cut(s)	122
PciSI	GCTCTTC	1 cut(s)	558
PdmI	GAANNNNTTC	1 cut(s)	128
PfeI	GAWTC	4 cut(s)	103, 142, 362, 723
PfoI	TCCNGGA	1 cut(s)	466
PkrI	GCNGC	3 cut(s)	188, 421, 696
PleI	GAGTC	2 cut(s)	361, 735
PpsI	GAGTC	2 cut(s)	361, 735
PsiI	TTATAA	1 cut(s)	659
Psp6I	CCWGG	2 cut(s)	466, 898
PspGI	CCWGG	2 cut(s)	466, 898
PsuI	RGATCY	2 cut(s)	32, 910
RsaI	GTAC	2 cut(s)	596, 920
RsaNI	GTAC	2 cut(s)	595, 919
RseI	CAYNNNNRTG	1 cut(s)	402
SapI	GCTCTTC	1 cut(s)	558
SaqAI	TTAA	4 cut(s)	570, 611, 729, 952
SatI	GCNGC	3 cut(s)	187, 420, 695
Sau3AI	GATC	5 cut(s)	32, 406, 817, 836, 910
SchI	GAGTC	2 cut(s)	362, 735
ScrFI	CCNGG	4 cut(s)	468, 519, 735, 900
SfcI	CTRYAG	1 cut(s)	414
SfuI	TTCGAA	1 cut(s)	122
SmiMI	CAYNNNNRTG	1 cut(s)	402
SmlI	CTYRAG	2 cut(s)	569, 728
SmoI	CTYRAG	2 cut(s)	569, 728
Sse9I	AATT	4 cut(s)	16, 224, 619, 643
SsiI	CCGC	4 cut(s)	186, 231, 252, 695
SspMI	CTAG	2 cut(s)	255, 933
StyD4I	CCNGG	4 cut(s)	466, 517, 733, 898
StyI	CCWWGG	3 cut(s)	383, 441, 945
TaaI	ACNGT	2 cut(s)	137, 767
TaiI	ACGT	2 cut(s)	160, 924
TaqI	TCGA	5 cut(s)	122, 279, 483, 761, 791
TasI	AATT	4 cut(s)	16, 224, 619, 643
TatI	WGTACW	1 cut(s)	594
TauI	GCSGC	2 cut(s)	189, 697
TfiI	GAWTC	4 cut(s)	103, 142, 362, 723
Tru1I	TTAA	4 cut(s)	570, 611, 729, 952
Tru9I	TTAA	4 cut(s)	570, 611, 729, 952
TseFI	GTSAC	1 cut(s)	391
TseI	GCWGC	1 cut(s)	419
Tsp45I	GTSAC	1 cut(s)	391
TspDTI	ATGAA	5 cut(s)	218, 232, 569, 573, 731
Vha464I	CTTAAG	2 cut(s)	569, 728
XapI	RAATTY	1 cut(s)	224
XbaI	TCTAGA	1 cut(s)	932
XmnI	GAANNNNTTC	1 cut(s)	128
XspI	CTAG	2 cut(s)	255, 933

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.