Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0007355

Physical Location & Seq

Genomic Coordinates Reverse (-)

3817576 .. 3821330

Gene Structure 3755 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g07220.t6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGTGGACTGGCCGGAGCAGATTCCTTACAAGCCAGAGGATTTCCAGCGCTATGACGAGAGTTGATTTCATCAGGTCACCAGATACATTATTTTATGAGAGTCCTCGCTTTGTGACACATATTGATGATCCGGCCATTGCGGCACTGACCAAGTACTATTCTAAGGTGTTTCCGCCTAGCAACACTCCAGGAGTAAGCATGCTGGACATGTGTAGCAGTTGGGTCAGTCACTTTCCTCCAGGATACAAGCAAGAGCGAGTAGTTGGAATGGGAATGAATGAAGCAGAGCTAAAGGCGAATCCGGTTTTGACAGAGTATGTTCTTCAAGACTTGAATGTCAACCCTAAACTTCCCTTCGAAGATAATTCTTTCGATGTGATAACTAATGTCGTTAGTGTTGATTATATAAACAAGCCTATTGAAGTTTTCAAGGAAATGTGCCGGATTCTTAAGCCAGGCGGACTTGCTATAATTAGCTTTTCCAACCGATGTTTCTGGACTAAAGCAATTTCAATGTGGACATCAACTGGTGATGCTGATCATGGTTTAATTGTTGGGTCGTATTTCCACTATGCTGGTGGATTTGAACCTCCCCAGGTAATTCATTGCTTCTTTTGGCCCTTTTTCTCATTCCTCTTTTCAGCACATATAAGTTCTCTTCACCACATGAATCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11

Protein Analysis

226

Amino Acids

25.57

Weight (kDa)

6.43

Isoelectric Point (pI)

40.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_11	PF08241	189 - 251	5.1e-11	Methyltransferase domain
Methyltransf_25	PF13649	193 - 247	2.6e-06	Methyltransferase domain
Methyltransf_23	PF13489	204 - 274	2.8e-06	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29590
fragaria_vesca	FvH4_1g07220 FvH4_1g07220 FvH4_1g07220 FvH4_1g07220 FvH4_1g07220 FvH4_1g07220 FvH4_2g04400
malus_domestica	MD02G1076700.v1.1 MD15G1205400.v1.1
prunus_persica	Prupe.7G211700_v2.0.a1 Prupe.7G211700_v2.0.a1 Prupe.7G211700_v2.0.a1
pyrus_communis	pycom02g06110 pycom15g18220
rosa_chinensis	RchiOBHm_Chr2g0093121
rosa_laevigata	RLG00000016370
rosa_multiflora	Rmu_sc0006865.1_g000012
rosa_roxburghii	Rroxscaffold_2G00148490
rosa_rugosa	Rorug02G0032900 Rorug02G0033000
rosa_samantha	Rh2BG079900 Rh2CG082100 Rh2DG077200
rosa_wichuraiana	Rw2G006800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	335
AciI	CCGC	3 cut(s)	140, 173, 459
AclWI	GGATC	1 cut(s)	122
AcoI	YGGCCR	2 cut(s)	10, 132
AfaI	GTAC	1 cut(s)	155
AfeI	AGCGCT	1 cut(s)	49
AflII	CTTAAG	1 cut(s)	449
AflIII	ACRYGT	1 cut(s)	207
AgsI	TTSAA	6 cut(s)	326, 334, 422, 430, 513, 587
AjnI	CCWGG	4 cut(s)	187, 238, 454, 594
AjuI	GAANNNNNNNTTGG	2 cut(s)	476, 508
AluBI	AGCT	2 cut(s)	289, 477
AluI	AGCT	2 cut(s)	289, 477
AlwI	GGATC	1 cut(s)	122
Aor51HI	AGCGCT	1 cut(s)	49
AoxI	GGCC	3 cut(s)	10, 132, 617
AspLEI	GCGC	1 cut(s)	50
AspS9I	GGNCC	1 cut(s)	618
AsuHPI	GGTGA	3 cut(s)	69, 542, 653
AsuII	TTCGAA	1 cut(s)	357
BciT130I	CCWGG	4 cut(s)	189, 240, 456, 596
BciVI	GTATCC	1 cut(s)	236
BclI	TGATCA	1 cut(s)	538
BfaI	CTAG	1 cut(s)	177
BfoI	RGCGCY	1 cut(s)	51
BfrI	CTTAAG	1 cut(s)	449
BfuI	GTATCC	1 cut(s)	236
BglI	GCCNNNNNGGC	1 cut(s)	140
BisI	GCNGC	1 cut(s)	141
BlsI	GCNGC	1 cut(s)	142
BmcAI	AGTACT	1 cut(s)	155
Bme1390I	CCNGG	4 cut(s)	189, 240, 456, 596
BmgT120I	GGNCC	1 cut(s)	618
BmrFI	CCNGG	4 cut(s)	189, 240, 456, 596
BmsI	GCATC	1 cut(s)	523
BpmI	CTGGAG	2 cut(s)	171, 222
Bpu14I	TTCGAA	1 cut(s)	357
BsaBI	GATNNNNATC	1 cut(s)	537
BsaJI	CCNNGG	1 cut(s)	594
BsaWI	WCCGGW	1 cut(s)	301
Bse1I	ACTGG	2 cut(s)	13, 532
Bse3DI	GCAATG	2 cut(s)	135, 604
Bse8I	GATNNNNATC	1 cut(s)	537
BseBI	CCWGG	4 cut(s)	189, 240, 456, 596
BseDI	CCNNGG	1 cut(s)	594
BseJI	GATNNNNATC	1 cut(s)	537
BseMI	GCAATG	2 cut(s)	135, 604
BseNI	ACTGG	2 cut(s)	13, 532
BshFI	GGCC	3 cut(s)	12, 134, 619
BsiSI	CCGG	4 cut(s)	13, 131, 302, 442
BsnI	GGCC	3 cut(s)	12, 134, 619
Bsp119I	TTCGAA	1 cut(s)	357
Bsp143I	GATC	2 cut(s)	127, 538
BspACI	CCGC	3 cut(s)	140, 173, 459
BspANI	GGCC	3 cut(s)	12, 134, 619
BspPI	GGATC	1 cut(s)	122
BspT104I	TTCGAA	1 cut(s)	357
BspTI	CTTAAG	1 cut(s)	449
BsrDI	GCAATG	2 cut(s)	135, 604
BsrI	ACTGG	2 cut(s)	13, 532
BssECI	CCNNGG	1 cut(s)	594
BssMI	GATC	2 cut(s)	127, 538
Bst2UI	CCWGG	4 cut(s)	189, 240, 456, 596
Bst6I	CTCTTC	1 cut(s)	663
BstAFI	CTTAAG	1 cut(s)	449
BstBI	TTCGAA	1 cut(s)	357
BstC8I	GCNNGC	1 cut(s)	200
BstDEI	CTNAG	1 cut(s)	162
BstEII	GGTNACC	1 cut(s)	75
BstH2I	RGCGCY	1 cut(s)	51
BstHHI	GCGC	1 cut(s)	50
BstKTI	GATC	2 cut(s)	130, 541
BstMBI	GATC	2 cut(s)	127, 538
BstMWI	GCNNNNNNNGC	1 cut(s)	140
BstNI	CCWGG	4 cut(s)	189, 240, 456, 596
BstNSI	RCATGY	2 cut(s)	202, 211
BstPI	GGTNACC	1 cut(s)	75
BstSCI	CCNGG	4 cut(s)	187, 238, 454, 594
BstXI	CCANNNNNNTGG	1 cut(s)	575
BsuI	GTATCC	1 cut(s)	236
BsuRI	GGCC	3 cut(s)	12, 134, 619
BtsIMutI	CAGTG	1 cut(s)	143
Cac8I	GCNNGC	1 cut(s)	200
CfoI	GCGC	1 cut(s)	50
Cfr13I	GGNCC	1 cut(s)	618
Csp6I	GTAC	1 cut(s)	154
CviAII	CATG	4 cut(s)	199, 208, 542, 667
CviJI	RGCY	8 cut(s)	12, 33, 134, 289, 415, 454, 477, 619
CviKI_1	RGCY	8 cut(s)	12, 33, 134, 289, 415, 454, 477, 619
CviQI	GTAC	1 cut(s)	154
DdeI	CTNAG	1 cut(s)	162
DpnI	GATC	2 cut(s)	129, 540
DpnII	GATC	2 cut(s)	127, 538
DrdI	GACNNNNNNGTC	1 cut(s)	335
DseDI	GACNNNNNNGTC	1 cut(s)	335
EaeI	YGGCCR	2 cut(s)	10, 132
Eam1104I	CTCTTC	1 cut(s)	663
EarI	CTCTTC	1 cut(s)	663
EciI	GGCGGA	2 cut(s)	162, 474
Eco47III	AGCGCT	1 cut(s)	49
Eco91I	GGTNACC	1 cut(s)	75
EcoO65I	GGTNACC	1 cut(s)	75
EcoRII	CCWGG	4 cut(s)	187, 238, 454, 594
FaeI	CATG	4 cut(s)	202, 211, 545, 670
FatI	CATG	4 cut(s)	198, 207, 541, 666
FbaI	TGATCA	1 cut(s)	538
Fnu4HI	GCNGC	1 cut(s)	141
Fsp4HI	GCNGC	1 cut(s)	141
FspBI	CTAG	1 cut(s)	177
GlaI	GCGC	1 cut(s)	49
GluI	GCNGC	1 cut(s)	141
GsuI	CTGGAG	2 cut(s)	171, 222
HaeII	RGCGCY	1 cut(s)	51
HaeIII	GGCC	3 cut(s)	12, 134, 619
HapII	CCGG	4 cut(s)	13, 131, 302, 442
HhaI	GCGC	1 cut(s)	50
Hin1II	CATG	4 cut(s)	202, 211, 545, 670
Hin6I	GCGC	1 cut(s)	48
HinP1I	GCGC	1 cut(s)	48
HincII	GTYRAC	1 cut(s)	340
HindII	GTYRAC	1 cut(s)	340
HinfI	GANTC	5 cut(s)	21, 100, 298, 445, 670
HpaII	CCGG	4 cut(s)	13, 131, 302, 442
HphI	GGTGA	3 cut(s)	69, 542, 653
Hpy166II	GTNNAC	3 cut(s)	6, 340, 519
Hpy188III	TCNNGA	2 cut(s)	326, 496
Hpy8I	GTNNAC	3 cut(s)	6, 340, 519
HpyAV	CCTTC	1 cut(s)	364
HpyF10VI	GCNNNNNNNGC	1 cut(s)	140
HpyF3I	CTNAG	1 cut(s)	162
Hsp92II	CATG	4 cut(s)	202, 211, 545, 670
HspAI	GCGC	1 cut(s)	48
Ksp22I	TGATCA	1 cut(s)	538
Kzo9I	GATC	2 cut(s)	127, 538
LmnI	GCTCC	1 cut(s)	15
LweI	GCATC	1 cut(s)	523
MaeI	CTAG	1 cut(s)	177
MaeIII	GTNAC	3 cut(s)	75, 112, 227
MalI	GATC	2 cut(s)	129, 540
MboI	GATC	2 cut(s)	127, 538
MboII	GAAGA	3 cut(s)	314, 371, 650
MluCI	AATT	5 cut(s)	364, 471, 507, 549, 600
MlyI	GAGTC	1 cut(s)	109
MmeI	TCCRAC	2 cut(s)	244, 507
MnlI	CCTC	5 cut(s)	30, 114, 246, 600, 644
MseI	TTAA	3 cut(s)	450, 548, 676
MslI	CAYNNNNRTG	1 cut(s)	123
MspCI	CTTAAG	1 cut(s)	449
MspI	CCGG	4 cut(s)	13, 131, 302, 442
MspR9I	CCNGG	4 cut(s)	189, 240, 456, 596
MvaI	CCWGG	4 cut(s)	189, 240, 456, 596
MwoI	GCNNNNNNNGC	1 cut(s)	140
NdeII	GATC	2 cut(s)	127, 538
NlaIII	CATG	4 cut(s)	202, 211, 545, 670
NmuCI	GTSAC	3 cut(s)	75, 112, 227
NspI	RCATGY	2 cut(s)	202, 211
NspV	TTCGAA	1 cut(s)	357
PaeI	GCATGC	1 cut(s)	202
PciI	ACATGT	1 cut(s)	207
PfeI	GAWTC	4 cut(s)	21, 298, 445, 670
PfoI	TCCNGGA	2 cut(s)	187, 238
PkrI	GCNGC	1 cut(s)	142
PleI	GAGTC	1 cut(s)	108
PpsI	GAGTC	1 cut(s)	108
PscI	ACATGT	1 cut(s)	207
Psp6I	CCWGG	4 cut(s)	187, 238, 454, 594
PspEI	GGTNACC	1 cut(s)	75
PspGI	CCWGG	4 cut(s)	187, 238, 454, 594
PspPI	GGNCC	1 cut(s)	618
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
RseI	CAYNNNNRTG	1 cut(s)	123
SaqAI	TTAA	3 cut(s)	450, 548, 676
SatI	GCNGC	1 cut(s)	141
Sau3AI	GATC	2 cut(s)	127, 538
Sau96I	GGNCC	1 cut(s)	618
ScaI	AGTACT	1 cut(s)	155
SchI	GAGTC	1 cut(s)	109
ScrFI	CCNGG	4 cut(s)	189, 240, 456, 596
SetI	ASST	6 cut(s)	77, 168, 291, 479, 592, 600
SfaNI	GCATC	1 cut(s)	523
SfuI	TTCGAA	1 cut(s)	357
SmiMI	CAYNNNNRTG	1 cut(s)	123
SmlI	CTYRAG	1 cut(s)	449
SmoI	CTYRAG	1 cut(s)	449
SphI	GCATGC	1 cut(s)	202
Sse9I	AATT	5 cut(s)	364, 471, 507, 549, 600
SsiI	CCGC	3 cut(s)	140, 173, 459
SspMI	CTAG	1 cut(s)	177
StyD4I	CCNGG	4 cut(s)	187, 238, 454, 594
TaqI	TCGA	2 cut(s)	357, 372
TasI	AATT	5 cut(s)	364, 471, 507, 549, 600
TatI	WGTACW	1 cut(s)	153
TauI	GCSGC	1 cut(s)	143
TfiI	GAWTC	4 cut(s)	21, 298, 445, 670
Tru1I	TTAA	3 cut(s)	450, 548, 676
Tru9I	TTAA	3 cut(s)	450, 548, 676
TscAI	CASTG	1 cut(s)	150
TseFI	GTSAC	3 cut(s)	75, 112, 227
Tsp45I	GTSAC	3 cut(s)	75, 112, 227
TspDTI	ATGAA	4 cut(s)	58, 290, 294, 593
TspRI	CASTG	1 cut(s)	150
Vha464I	CTTAAG	1 cut(s)	449
XceI	RCATGY	2 cut(s)	202, 211
XcmI	CCANNNNNNNNNTGG	1 cut(s)	575
XspI	CTAG	1 cut(s)	177
ZrmI	AGTACT	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.