Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0007355

Physical Location & Seq

Genomic Coordinates Reverse (-)

6083246 .. 6086153

Gene Structure 2908 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG079900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGTGGCAAAATGTGATCCAATTCCAGATAATCTACACATACCAAAGTAACCCTTCTCGGTTTCTTCTTCAATTCTGTAACGCTAGCTGGTTGACGGTTGACCCCTTTAACTATCATTTAAAAGTTAAAACTCAACAGTCAGCAATGCCCAAATGTGTTGGAATTGGACTCGGGCTTCCTCATCGACTTCCATATTTGGCGGGTGTTTATTCTTGTTCTTCTTCTTATTCAATCACTAGTGCAGTTGGGTCTGTCCCTAATCTTGCAAAAGTAGTAAGCAAATGGAGCAGTGGAGGTAGAGCACCTCGGCGTCTGGTTTTGGGCCTTGGAGCTTCATTTTGGGCTCAGTTGATGAACATGTCTGGTGCTGTTGGCGGCAAGGCTTTCACTGCCTCTGCCAGGTTGAAGAGTGGTCCTTCCTTTGAAGAGATATTGAAGAATGTGGATTGGCCGGAGCAGATTCCTTACAAGCTGGAGGATTTCCAGCGCTATGATGAGTCACCAGATACATTGTTTTATGAGAGTCCGCGCTTTGTGACACATATTGATGATCCAGCCATTGCGGCACTGACTAAGTACTATTCTAAGGTGTTTCCGCCTAGCAACACTCCAGGAGTAAGCATGCTGGACATGTGTAGCAGTTGGGTTAGTCACTTTCCACCAGGATACAAGCAAGAGCGAGTAGTTGGAATGGGAATGAATGAAGCAGAGCTAAAGGCGAATCCGGTTAGTGTTGATTATATAAACAAGCCTATTGAAGTATTCAAGGAAATGTGCCGGATTCTTAAGCCAGGGGGACTTGCTATAATTAGCTTTTCCAACCGATGTTTCTGGACTAAAGCAATCTCAATCTGGACATCAACTGGTGATGCTGATCATGGTTTGATTGTTGGGTCATATTTCCACTATGCTGGAGGATTTGAACCTCCTCAGGGGGTGGATATTTCTCCCAACCCTGGACGCTCAGATCCCATGTACATTGTACACTCTAGAAAGTTATCTTCCGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11

Protein Analysis

336

Amino Acids

37.28

Weight (kDa)

8.88

Isoelectric Point (pI)

40.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29590
fragaria_vesca	FvH4_1g07220 FvH4_1g07220 FvH4_1g07220 FvH4_1g07220 FvH4_1g07220 FvH4_1g07220 FvH4_2g04400
malus_domestica	MD02G1076700.v1.1 MD15G1205400.v1.1
prunus_persica	Prupe.7G211700_v2.0.a1 Prupe.7G211700_v2.0.a1 Prupe.7G211700_v2.0.a1
pyrus_communis	pycom02g06110 pycom15g18220
rosa_chinensis	RchiOBHm_Chr2g0093121
rosa_laevigata	RLG00000016370
rosa_multiflora	Rmu_sc0006865.1_g000012
rosa_roxburghii	Rroxscaffold_2G00148490
rosa_rugosa	Rorug02G0032900 Rorug02G0033000
rosa_samantha	Rh2BG079900 Rh2CG082100 Rh2DG077200
rosa_wichuraiana	Rw2G006800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	529
AciI	CCGC	5 cut(s)	200, 375, 527, 563, 596
AclWI	GGATC	3 cut(s)	10, 545, 962
AcoI	YGGCCR	1 cut(s)	449
AcyI	GRCGYC	1 cut(s)	310
AfaI	GTAC	3 cut(s)	578, 977, 984
AfeI	AGCGCT	1 cut(s)	488
AfiI	CCNNNNNNNGG	3 cut(s)	399, 932, 956
AflII	CTTAAG	1 cut(s)	785
AflIII	ACRYGT	2 cut(s)	357, 630
AgsI	TTSAA	8 cut(s)	71, 231, 406, 425, 436, 758, 766, 923
AhlI	ACTAGT	1 cut(s)	236
AjnI	CCWGG	5 cut(s)	398, 610, 661, 790, 955
AjuI	GAANNNNNNNTTGG	2 cut(s)	812, 844
AluBI	AGCT	5 cut(s)	87, 332, 472, 712, 813
AluI	AGCT	5 cut(s)	87, 332, 472, 712, 813
Alw21I	GWGCWC	1 cut(s)	304
AlwI	GGATC	3 cut(s)	10, 545, 962
Ama87I	CYCGRG	1 cut(s)	170
Aor51HI	AGCGCT	1 cut(s)	488
AoxI	GGCC	2 cut(s)	322, 449
AspLEI	GCGC	2 cut(s)	489, 531
AspS9I	GGNCC	2 cut(s)	322, 413
AsuHPI	GGTGA	2 cut(s)	492, 878
AsuNHI	GCTAGC	1 cut(s)	83
AvaI	CYCGRG	1 cut(s)	170
AvaII	GGWCC	1 cut(s)	413
AxyI	CCTNAGG	1 cut(s)	930
BanII	GRGCYC	1 cut(s)	346
Bbv12I	GWGCWC	1 cut(s)	304
BciT130I	CCWGG	5 cut(s)	400, 612, 663, 792, 957
BciVI	GTATCC	1 cut(s)	659
BclI	TGATCA	1 cut(s)	874
BcuI	ACTAGT	1 cut(s)	236
BfaI	CTAG	4 cut(s)	84, 237, 600, 990
BfoI	RGCGCY	1 cut(s)	490
BfrI	CTTAAG	1 cut(s)	785
BfuI	GTATCC	1 cut(s)	659
BglI	GCCNNNNNGGC	1 cut(s)	563
BisI	GCNGC	2 cut(s)	376, 564
BlsI	GCNGC	2 cut(s)	377, 565
BmcAI	AGTACT	1 cut(s)	578
Bme1390I	CCNGG	5 cut(s)	400, 612, 663, 792, 957
Bme18I	GGWCC	1 cut(s)	413
BmeT110I	CYCGRG	1 cut(s)	170
BmgT120I	GGNCC	2 cut(s)	322, 413
BmrFI	CCNGG	5 cut(s)	400, 612, 663, 792, 957
BmsI	GCATC	1 cut(s)	859
BmtI	GCTAGC	1 cut(s)	87
BpmI	CTGGAG	3 cut(s)	494, 594, 933
BsaBI	GATNNNNATC	1 cut(s)	873
BsaHI	GRCGYC	1 cut(s)	310
BsaJI	CCNNGG	4 cut(s)	305, 325, 791, 955
BsaWI	WCCGGW	1 cut(s)	724
Bsc4I	CCNNNNNNNGG	3 cut(s)	399, 932, 956
Bse1I	ACTGG	1 cut(s)	868
Bse21I	CCTNAGG	1 cut(s)	930
Bse3DI	GCAATG	2 cut(s)	150, 558
Bse8I	GATNNNNATC	1 cut(s)	873
BseBI	CCWGG	5 cut(s)	400, 612, 663, 792, 957
BseDI	CCNNGG	4 cut(s)	305, 325, 791, 955
BseJI	GATNNNNATC	1 cut(s)	873
BseLI	CCNNNNNNNGG	3 cut(s)	399, 932, 956
BseMI	GCAATG	2 cut(s)	150, 558
BseMII	CTCAG	3 cut(s)	359, 944, 978
BseNI	ACTGG	1 cut(s)	868
BseRI	GAGGAG	1 cut(s)	918
BsgI	GTGCAG	1 cut(s)	261
Bsh1236I	CGCG	1 cut(s)	529
BshFI	GGCC	2 cut(s)	324, 451
BsiHKAI	GWGCWC	1 cut(s)	304
BsiHKCI	CYCGRG	1 cut(s)	170
BsiSI	CCGG	3 cut(s)	452, 725, 778
BslFI	GGGAC	2 cut(s)	239, 810
BslI	CCNNNNNNNGG	3 cut(s)	399, 932, 956
BsmFI	GGGAC	2 cut(s)	239, 810
BsnI	GGCC	2 cut(s)	324, 451
BsoBI	CYCGRG	1 cut(s)	170
Bsp1286I	GDGCHC	2 cut(s)	304, 346
Bsp1407I	TGTACA	2 cut(s)	975, 982
Bsp143I	GATC	4 cut(s)	15, 550, 874, 967
BspACI	CCGC	5 cut(s)	200, 375, 527, 563, 596
BspANI	GGCC	2 cut(s)	324, 451
BspCNI	CTCAG	3 cut(s)	358, 943, 977
BspFNI	CGCG	1 cut(s)	529
BspOI	GCTAGC	1 cut(s)	87
BspPI	GGATC	3 cut(s)	10, 545, 962
BspTI	CTTAAG	1 cut(s)	785
BsrDI	GCAATG	2 cut(s)	150, 558
BsrGI	TGTACA	2 cut(s)	975, 982
BsrI	ACTGG	1 cut(s)	868
BssECI	CCNNGG	4 cut(s)	305, 325, 791, 955
BssMI	GATC	4 cut(s)	15, 550, 874, 967
BssNI	GRCGYC	1 cut(s)	310
BssT1I	CCWWGG	1 cut(s)	325
Bst2UI	CCWGG	5 cut(s)	400, 612, 663, 792, 957
Bst4CI	ACNGT	2 cut(s)	97, 138
Bst6I	CTCTTC	2 cut(s)	401, 420
BstACI	GRCGYC	1 cut(s)	310
BstAFI	CTTAAG	1 cut(s)	785
BstAUI	TGTACA	2 cut(s)	975, 982
BstC8I	GCNNGC	2 cut(s)	85, 623
BstDEI	CTNAG	5 cut(s)	345, 573, 585, 930, 964
BstENI	CCTNNNNNAGG	1 cut(s)	397
BstFNI	CGCG	1 cut(s)	529
BstH2I	RGCGCY	1 cut(s)	490
BstHHI	GCGC	2 cut(s)	489, 531
BstKTI	GATC	4 cut(s)	18, 553, 877, 970
BstMBI	GATC	4 cut(s)	15, 550, 874, 967
BstMWI	GCNNNNNNNGC	3 cut(s)	285, 389, 563
BstNI	CCWGG	5 cut(s)	400, 612, 663, 792, 957
BstNSI	RCATGY	3 cut(s)	361, 625, 634
BstSCI	CCNGG	5 cut(s)	398, 610, 661, 790, 955
BstUI	CGCG	1 cut(s)	529
BstX2I	RGATCY	1 cut(s)	967
BstXI	CCANNNNNNTGG	1 cut(s)	911
BstYI	RGATCY	1 cut(s)	967
Bsu36I	CCTNAGG	1 cut(s)	930
BsuI	GTATCC	1 cut(s)	659
BsuRI	GGCC	2 cut(s)	324, 451
BtsI	GCAGTG	2 cut(s)	295, 387
BtsIMutI	CAGTG	3 cut(s)	295, 387, 566
Cac8I	GCNNGC	2 cut(s)	85, 623
CfoI	GCGC	2 cut(s)	489, 531
Cfr13I	GGNCC	2 cut(s)	322, 413
CseI	GACGC	2 cut(s)	299, 969
Csp6I	GTAC	3 cut(s)	577, 976, 983
CviAII	CATG	5 cut(s)	358, 622, 631, 878, 973
CviQI	GTAC	3 cut(s)	577, 976, 983
DdeI	CTNAG	5 cut(s)	345, 573, 585, 930, 964
DpnI	GATC	4 cut(s)	17, 552, 876, 969
DpnII	GATC	4 cut(s)	15, 550, 874, 967
DraI	TTTAAA	1 cut(s)	120
EaeI	YGGCCR	1 cut(s)	449
Eam1104I	CTCTTC	2 cut(s)	401, 420
EarI	CTCTTC	2 cut(s)	401, 420
EciI	GGCGGA	1 cut(s)	585
Eco130I	CCWWGG	1 cut(s)	325
Eco24I	GRGCYC	1 cut(s)	346
Eco47I	GGWCC	1 cut(s)	413
Eco47III	AGCGCT	1 cut(s)	488
Eco81I	CCTNAGG	1 cut(s)	930
Eco88I	CYCGRG	1 cut(s)	170
EcoNI	CCTNNNNNAGG	1 cut(s)	397
EcoRII	CCWGG	5 cut(s)	398, 610, 661, 790, 955
EcoT14I	CCWWGG	1 cut(s)	325
EcoT38I	GRGCYC	1 cut(s)	346
ErhI	CCWWGG	1 cut(s)	325
FaeI	CATG	5 cut(s)	361, 625, 634, 881, 976
FalI	AAGNNNNNCTT	2 cut(s)	37, 69
FaqI	GGGAC	2 cut(s)	239, 810
FatI	CATG	5 cut(s)	357, 621, 630, 877, 972
FauI	CCCGC	1 cut(s)	193
FbaI	TGATCA	1 cut(s)	874
Fnu4HI	GCNGC	2 cut(s)	376, 564
FriOI	GRGCYC	1 cut(s)	346
Fsp4HI	GCNGC	2 cut(s)	376, 564
FspBI	CTAG	4 cut(s)	84, 237, 600, 990
GlaI	GCGC	2 cut(s)	488, 530
GluI	GCNGC	2 cut(s)	376, 564
GsuI	CTGGAG	3 cut(s)	494, 594, 933
HaeII	RGCGCY	1 cut(s)	490
HaeIII	GGCC	2 cut(s)	324, 451
HapII	CCGG	3 cut(s)	452, 725, 778
HgaI	GACGC	2 cut(s)	299, 969
HhaI	GCGC	2 cut(s)	489, 531
Hin1I	GRCGYC	1 cut(s)	310
Hin1II	CATG	5 cut(s)	361, 625, 634, 881, 976
Hin6I	GCGC	2 cut(s)	487, 529
HinP1I	GCGC	2 cut(s)	487, 529
HincII	GTYRAC	2 cut(s)	93, 100
HindII	GTYRAC	2 cut(s)	93, 100
HinfI	GANTC	6 cut(s)	168, 460, 497, 523, 721, 781
HpaII	CCGG	3 cut(s)	452, 725, 778
HphI	GGTGA	2 cut(s)	492, 878
Hpy166II	GTNNAC	3 cut(s)	93, 100, 985
Hpy188I	TCNGA	1 cut(s)	967
Hpy188III	TCNNGA	4 cut(s)	25, 832, 853, 990
Hpy8I	GTNNAC	3 cut(s)	93, 100, 985
HpyAV	CCTTC	2 cut(s)	63, 426
HpyCH4III	ACNGT	2 cut(s)	97, 138
HpyCH4V	TGCA	2 cut(s)	242, 266
HpyF10VI	GCNNNNNNNGC	3 cut(s)	285, 389, 563
HpyF3I	CTNAG	5 cut(s)	345, 573, 585, 930, 964
Hsp92I	GRCGYC	1 cut(s)	310
Hsp92II	CATG	5 cut(s)	361, 625, 634, 881, 976
HspAI	GCGC	2 cut(s)	487, 529
Ksp22I	TGATCA	1 cut(s)	874
Kzo9I	GATC	4 cut(s)	15, 550, 874, 967
LmnI	GCTCC	3 cut(s)	285, 329, 454
LweI	GCATC	1 cut(s)	859
MaeI	CTAG	4 cut(s)	84, 237, 600, 990
MaeIII	GTNAC	5 cut(s)	47, 77, 498, 535, 650
MalI	GATC	4 cut(s)	17, 552, 876, 969
MboI	GATC	4 cut(s)	15, 550, 874, 967
MboII	GAAGA	8 cut(s)	56, 59, 210, 213, 418, 437, 448, 993
MflI	RGATCY	1 cut(s)	967
MhlI	GDGCHC	2 cut(s)	304, 346
MluCI	AATT	4 cut(s)	20, 71, 162, 807
MlyI	GAGTC	3 cut(s)	162, 506, 532
MmeI	TCCRAC	3 cut(s)	139, 667, 843
MnlI	CCTC	8 cut(s)	189, 287, 315, 403, 469, 908, 936, 939
MseI	TTAA	4 cut(s)	108, 119, 126, 786
MslI	CAYNNNNRTG	1 cut(s)	546
MspCI	CTTAAG	1 cut(s)	785
MspI	CCGG	3 cut(s)	452, 725, 778
MspR9I	CCNGG	5 cut(s)	400, 612, 663, 792, 957
MvaI	CCWGG	5 cut(s)	400, 612, 663, 792, 957
MvnI	CGCG	1 cut(s)	529
MwoI	GCNNNNNNNGC	3 cut(s)	285, 389, 563
NdeII	GATC	4 cut(s)	15, 550, 874, 967
NheI	GCTAGC	1 cut(s)	83
NlaIII	CATG	5 cut(s)	361, 625, 634, 881, 976
NmeAIII	GCCGAG	1 cut(s)	286
NmuCI	GTSAC	3 cut(s)	498, 535, 650
NspI	RCATGY	3 cut(s)	361, 625, 634
PaeI	GCATGC	1 cut(s)	625
PciI	ACATGT	2 cut(s)	357, 630
PfeI	GAWTC	3 cut(s)	460, 721, 781
PfoI	TCCNGGA	1 cut(s)	610
PkrI	GCNGC	2 cut(s)	377, 565
PleI	GAGTC	3 cut(s)	162, 505, 531
PpsI	GAGTC	3 cut(s)	162, 505, 531
PscI	ACATGT	2 cut(s)	357, 630
Psp6I	CCWGG	5 cut(s)	398, 610, 661, 790, 955
PspGI	CCWGG	5 cut(s)	398, 610, 661, 790, 955
PspPI	GGNCC	2 cut(s)	322, 413
PsuI	RGATCY	1 cut(s)	967
RsaI	GTAC	3 cut(s)	578, 977, 984
RsaNI	GTAC	3 cut(s)	577, 976, 983
RseI	CAYNNNNRTG	1 cut(s)	546
SaqAI	TTAA	4 cut(s)	108, 119, 126, 786
SatI	GCNGC	2 cut(s)	376, 564
Sau3AI	GATC	4 cut(s)	15, 550, 874, 967
Sau96I	GGNCC	2 cut(s)	322, 413
ScaI	AGTACT	1 cut(s)	578
SchI	GAGTC	3 cut(s)	162, 506, 532
ScrFI	CCNGG	5 cut(s)	400, 612, 663, 792, 957
SduI	GDGCHC	2 cut(s)	304, 346
SfaNI	GCATC	1 cut(s)	859
SinI	GGWCC	1 cut(s)	413
SmiMI	CAYNNNNRTG	1 cut(s)	546
SmlI	CTYRAG	1 cut(s)	785
SmoI	CTYRAG	1 cut(s)	785
SpeI	ACTAGT	1 cut(s)	236
SphI	GCATGC	1 cut(s)	625
Sse9I	AATT	4 cut(s)	20, 71, 162, 807
SsiI	CCGC	5 cut(s)	200, 375, 527, 563, 596
SspMI	CTAG	4 cut(s)	84, 237, 600, 990
StyD4I	CCNGG	5 cut(s)	398, 610, 661, 790, 955
StyI	CCWWGG	1 cut(s)	325
TaaI	ACNGT	2 cut(s)	97, 138
TaqI	TCGA	1 cut(s)	184
TasI	AATT	4 cut(s)	20, 71, 162, 807
TatI	WGTACW	3 cut(s)	576, 975, 982
TauI	GCSGC	2 cut(s)	378, 566
TfiI	GAWTC	3 cut(s)	460, 721, 781
Tru1I	TTAA	4 cut(s)	108, 119, 126, 786
Tru9I	TTAA	4 cut(s)	108, 119, 126, 786
TscAI	CASTG	3 cut(s)	295, 394, 573
TseFI	GTSAC	3 cut(s)	498, 535, 650
Tsp45I	GTSAC	3 cut(s)	498, 535, 650
TspDTI	ATGAA	4 cut(s)	324, 368, 713, 717
TspGWI	ACGGA	1 cut(s)	994
TspRI	CASTG	3 cut(s)	295, 394, 573
Vha464I	CTTAAG	1 cut(s)	785
VpaK11BI	GGWCC	1 cut(s)	413
XagI	CCTNNNNNAGG	1 cut(s)	397
XbaI	TCTAGA	1 cut(s)	989
XceI	RCATGY	3 cut(s)	361, 625, 634
XspI	CTAG	4 cut(s)	84, 237, 600, 990
ZrmI	AGTACT	1 cut(s)	578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.