Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0007355

Physical Location & Seq

Genomic Coordinates Reverse (-)

4094309 .. 4095891

Gene Structure 1583 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g06110.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGTGGAATGGCCGGAGCAATTTCCCTTCAAGCCTCAGGATTTCCAGCGCTTTGATGAGTAAGAAAACCTCCAAGTTGTGTTTTATGCCTTTAGGTGCTCTTGAACCTTCAGTTCAGTCATCGGATTCGGTGTTTTATGAGGCTCCACGCTTTGTGACACATATTGATGATCACGCCAATGCGGCACTGACCAAGTACTACTCAAAGGTGTCTCCTCCTAGCAACACTGCGGGAGTCAGTCACTTTCCACCGGGATACAAGCAAGAGCGAATAATCGGAATGGGCATGAATGAAGAAGAGCTCAAGCACAACCCGGTACTTCTTTCTCAATTCTTTAATGTCTTGACAAAATATGCTGTGCAAGACTTGAACGTGAGCCCCAAACTTCTGTTTGAAGACAATTCCTTTCATATCATTACTAACGTGGTTAGTGTCGATTATGTAACAAAGCCTCTTGACGTTTTCAAGGAAATGTGCCGGATTCTTAAGCCTGGTCTCCCCTCAACGAATTCTAACTTAGCGAAAATGTCTACAAACAGCTTTTCCAACCGTTGTTCCTGGACTAAACCAATCTCGATATGGACATCAACCAGTGATGCTGATCATGCTTTGCTTGCGGGGGCATATTTCCACTACGCTGGAGGATTTGAACCGCCTCAGGGAGGTCGTCTATTATTTTGTTCCAGTAACATAAGTAGCACCTGCTCTCTCCTAATTTTCTTTCGGATACTATGTCTACTTATGACATATAAAGCACAGATCATTAGCTCAGCTTCACCTATGACAGTTCAACTCTCTGATAATCCTGTTTCCTTCTTTTTGCAGATTCGATTTTGCTTGAACAATATGATGTCTTCGTTGGAAGCGGCCTCAGCATCGATCATATTAACAGTATGGCAAAGTTCTATATGGTTTACCCAAGGACCAAGTCATGTAGGGCTGTGGATATATCTCCGAACCCTGGACGCTCGGATCCCAGGTACTTTATATACTCTAGAAAGTTATCTGCAGTATAGAGATATCGGATTCGAGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11

Protein Analysis

346

Amino Acids

38.58

Weight (kDa)

8.59

Isoelectric Point (pI)

48.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29590
fragaria_vesca	FvH4_1g07220 FvH4_1g07220 FvH4_1g07220 FvH4_1g07220 FvH4_1g07220 FvH4_1g07220 FvH4_2g04400
malus_domestica	MD02G1076700.v1.1 MD15G1205400.v1.1
prunus_persica	Prupe.7G211700_v2.0.a1 Prupe.7G211700_v2.0.a1 Prupe.7G211700_v2.0.a1
pyrus_communis	pycom02g06110 pycom15g18220
rosa_chinensis	RchiOBHm_Chr2g0093121
rosa_laevigata	RLG00000016370
rosa_multiflora	Rmu_sc0006865.1_g000012
rosa_roxburghii	Rroxscaffold_2G00148490
rosa_rugosa	Rorug02G0032900 Rorug02G0033000
rosa_samantha	Rh2BG079900 Rh2CG082100 Rh2DG077200
rosa_wichuraiana	Rw2G006800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	710
Acc36I	ACCTGC	1 cut(s)	710
AccI	GTMKAC	2 cut(s)	530, 736
AciI	CCGC	5 cut(s)	182, 230, 617, 653, 866
AclWI	GGATC	2 cut(s)	967, 980
AcoI	YGGCCR	1 cut(s)	10
AcsI	RAATTY	1 cut(s)	508
AcuI	CTGAAG	1 cut(s)	93
AfaI	GTAC	3 cut(s)	197, 318, 982
AfeI	AGCGCT	1 cut(s)	49
AfiI	CCNNNNNNNGG	3 cut(s)	659, 662, 961
AflII	CTTAAG	1 cut(s)	485
AgsI	TTSAA	8 cut(s)	30, 104, 370, 395, 466, 650, 791, 841
AjnI	CCWGG	4 cut(s)	490, 557, 960, 976
AluBI	AGCT	4 cut(s)	301, 540, 768, 773
AluI	AGCT	4 cut(s)	301, 540, 768, 773
Alw21I	GWGCWC	2 cut(s)	100, 303
Alw26I	GTCTC	2 cut(s)	216, 500
AlwI	GGATC	2 cut(s)	967, 980
Aor51HI	AGCGCT	1 cut(s)	49
AoxI	GGCC	2 cut(s)	10, 867
ApoI	RAATTY	1 cut(s)	508
AspLEI	GCGC	1 cut(s)	50
AspS9I	GGNCC	1 cut(s)	923
AsuC2I	CCSGG	2 cut(s)	252, 314
AsuHPI	GGTGA	1 cut(s)	768
AvaII	GGWCC	1 cut(s)	923
AxyI	CCTNAGG	2 cut(s)	35, 657
BamHI	GGATCC	1 cut(s)	972
BanII	GRGCYC	2 cut(s)	303, 380
BbsI	GAAGAC	2 cut(s)	402, 846
Bbv12I	GWGCWC	2 cut(s)	100, 303
BbvCI	CCTCAGC	1 cut(s)	871
BciT130I	CCWGG	4 cut(s)	492, 559, 962, 978
BciVI	GTATCC	2 cut(s)	248, 720
BclI	TGATCA	2 cut(s)	169, 601
BcnI	CCSGG	2 cut(s)	252, 314
BcoDI	GTCTC	2 cut(s)	216, 500
BfaI	CTAG	2 cut(s)	219, 995
BfmI	CTRYAG	1 cut(s)	1007
BfoI	RGCGCY	1 cut(s)	51
BfrI	CTTAAG	1 cut(s)	485
BfuAI	ACCTGC	1 cut(s)	710
BfuI	GTATCC	2 cut(s)	248, 720
BglI	GCCNNNNNGGC	1 cut(s)	182
BisI	GCNGC	2 cut(s)	183, 867
BlpI	GCTNAGC	1 cut(s)	769
BlsI	GCNGC	2 cut(s)	184, 868
BmcAI	AGTACT	1 cut(s)	197
Bme1390I	CCNGG	6 cut(s)	252, 314, 492, 559, 962, 978
Bme18I	GGWCC	1 cut(s)	923
BmgT120I	GGNCC	1 cut(s)	923
BmiI	GGNNCC	2 cut(s)	144, 974
BmrFI	CCNGG	6 cut(s)	252, 314, 492, 559, 962, 978
BmsI	GCATC	2 cut(s)	586, 884
BpiI	GAAGAC	2 cut(s)	402, 846
BpmI	CTGGAG	1 cut(s)	660
Bpu10I	CCTNAGC	1 cut(s)	871
Bpu1102I	GCTNAGC	1 cut(s)	769
BpuEI	CTTGAG	1 cut(s)	287
BpuMI	CCSGG	2 cut(s)	252, 314
Bsa29I	ATCGAT	1 cut(s)	878
BsaBI	GATNNNNATC	1 cut(s)	600
BsaI	GGTCTC	1 cut(s)	500
BsaJI	CCNNGG	3 cut(s)	919, 960, 976
Bsc4I	CCNNNNNNNGG	3 cut(s)	659, 662, 961
Bse1I	ACTGG	2 cut(s)	591, 684
Bse21I	CCTNAGG	2 cut(s)	35, 657
Bse8I	GATNNNNATC	1 cut(s)	600
BseBI	CCWGG	4 cut(s)	492, 559, 962, 978
BseCI	ATCGAT	1 cut(s)	878
BseDI	CCNNGG	3 cut(s)	919, 960, 976
BseJI	GATNNNNATC	1 cut(s)	600
BseLI	CCNNNNNNNGG	3 cut(s)	659, 662, 961
BseMII	CTCAG	4 cut(s)	49, 671, 783, 885
BseNI	ACTGG	2 cut(s)	591, 684
BseRI	GAGGAG	1 cut(s)	204
BshFI	GGCC	2 cut(s)	12, 869
BshVI	ATCGAT	1 cut(s)	878
BsiHKAI	GWGCWC	2 cut(s)	100, 303
BsiSI	CCGG	4 cut(s)	13, 251, 314, 478
BslI	CCNNNNNNNGG	3 cut(s)	659, 662, 961
BsmAI	GTCTC	2 cut(s)	216, 500
BsnI	GGCC	2 cut(s)	12, 869
Bso31I	GGTCTC	1 cut(s)	500
Bsp1286I	GDGCHC	3 cut(s)	100, 303, 380
Bsp143I	GATC	5 cut(s)	169, 601, 759, 879, 972
Bsp1720I	GCTNAGC	1 cut(s)	769
BspACI	CCGC	5 cut(s)	182, 230, 617, 653, 866
BspANI	GGCC	2 cut(s)	12, 869
BspCNI	CTCAG	4 cut(s)	48, 670, 782, 884
BspDI	ATCGAT	1 cut(s)	878
BspLI	GGNNCC	2 cut(s)	144, 974
BspMAI	CTGCAG	1 cut(s)	1011
BspMI	ACCTGC	1 cut(s)	710
BspPI	GGATC	2 cut(s)	967, 980
BspQI	GCTCTTC	1 cut(s)	291
BspTI	CTTAAG	1 cut(s)	485
BspTNI	GGTCTC	1 cut(s)	500
BsrI	ACTGG	2 cut(s)	591, 684
BssECI	CCNNGG	3 cut(s)	919, 960, 976
BssMI	GATC	5 cut(s)	169, 601, 759, 879, 972
BssT1I	CCWWGG	1 cut(s)	919
Bst2UI	CCWGG	4 cut(s)	492, 559, 962, 978
Bst4CI	ACNGT	3 cut(s)	551, 787, 892
Bst6I	CTCTTC	1 cut(s)	291
BstAFI	CTTAAG	1 cut(s)	485
BstC8I	GCNNGC	1 cut(s)	615
BstDEI	CTNAG	5 cut(s)	35, 517, 657, 769, 871
BstENI	CCTNNNNNAGG	1 cut(s)	660
BstH2I	RGCGCY	1 cut(s)	51
BstHHI	GCGC	1 cut(s)	50
BstKTI	GATC	5 cut(s)	172, 604, 762, 882, 975
BstMAI	GTCTC	2 cut(s)	216, 500
BstMBI	GATC	5 cut(s)	169, 601, 759, 879, 972
BstMWI	GCNNNNNNNGC	4 cut(s)	182, 605, 614, 872
BstNI	CCWGG	4 cut(s)	492, 559, 962, 978
BstSCI	CCNGG	6 cut(s)	250, 312, 490, 557, 960, 976
BstSFI	CTRYAG	1 cut(s)	1007
BstV2I	GAAGAC	2 cut(s)	402, 846
BstX2I	RGATCY	1 cut(s)	972
BstXI	CCANNNNNNTGG	1 cut(s)	638
BstYI	RGATCY	1 cut(s)	972
Bsu15I	ATCGAT	1 cut(s)	878
Bsu36I	CCTNAGG	2 cut(s)	35, 657
BsuI	GTATCC	2 cut(s)	248, 720
BsuRI	GGCC	2 cut(s)	12, 869
BsuTUI	ATCGAT	1 cut(s)	878
BtsI	GCAGTG	1 cut(s)	225
BtsIMutI	CAGTG	3 cut(s)	185, 225, 598
BveI	ACCTGC	1 cut(s)	710
Cac8I	GCNNGC	1 cut(s)	615
CfoI	GCGC	1 cut(s)	50
Cfr13I	GGNCC	1 cut(s)	923
ClaI	ATCGAT	1 cut(s)	878
CseI	GACGC	1 cut(s)	974
Csp6I	GTAC	3 cut(s)	196, 317, 981
CviAII	CATG	3 cut(s)	286, 605, 932
CviQI	GTAC	3 cut(s)	196, 317, 981
DdeI	CTNAG	5 cut(s)	35, 517, 657, 769, 871
DpnI	GATC	5 cut(s)	171, 603, 761, 881, 974
DpnII	GATC	5 cut(s)	169, 601, 759, 879, 972
EaeI	YGGCCR	1 cut(s)	10
Eam1104I	CTCTTC	1 cut(s)	291
EarI	CTCTTC	1 cut(s)	291
Ecl136II	GAGCTC	1 cut(s)	301
Eco130I	CCWWGG	1 cut(s)	919
Eco24I	GRGCYC	2 cut(s)	303, 380
Eco31I	GGTCTC	1 cut(s)	500
Eco32I	GATATC	1 cut(s)	1021
Eco47I	GGWCC	1 cut(s)	923
Eco47III	AGCGCT	1 cut(s)	49
Eco53kI	GAGCTC	1 cut(s)	301
Eco57I	CTGAAG	1 cut(s)	93
Eco81I	CCTNAGG	2 cut(s)	35, 657
EcoICRI	GAGCTC	1 cut(s)	301
EcoNI	CCTNNNNNAGG	1 cut(s)	660
EcoRI	GAATTC	1 cut(s)	508
EcoRII	CCWGG	4 cut(s)	490, 557, 960, 976
EcoRV	GATATC	1 cut(s)	1021
EcoT14I	CCWWGG	1 cut(s)	919
EcoT38I	GRGCYC	2 cut(s)	303, 380
ErhI	CCWWGG	1 cut(s)	919
FaeI	CATG	3 cut(s)	289, 608, 935
FatI	CATG	3 cut(s)	285, 604, 931
FauI	CCCGC	2 cut(s)	223, 610
FbaI	TGATCA	2 cut(s)	169, 601
FblI	GTMKAC	2 cut(s)	530, 736
Fnu4HI	GCNGC	2 cut(s)	183, 867
FriOI	GRGCYC	2 cut(s)	303, 380
Fsp4HI	GCNGC	2 cut(s)	183, 867
FspBI	CTAG	2 cut(s)	219, 995
GlaI	GCGC	1 cut(s)	49
GluI	GCNGC	2 cut(s)	183, 867
GsuI	CTGGAG	1 cut(s)	660
HaeII	RGCGCY	1 cut(s)	51
HaeIII	GGCC	2 cut(s)	12, 869
HapII	CCGG	4 cut(s)	13, 251, 314, 478
HgaI	GACGC	1 cut(s)	974
HhaI	GCGC	1 cut(s)	50
Hin1II	CATG	3 cut(s)	289, 608, 935
Hin6I	GCGC	1 cut(s)	48
HinP1I	GCGC	1 cut(s)	48
HinfI	GANTC	5 cut(s)	125, 234, 481, 826, 1026
HpaII	CCGG	4 cut(s)	13, 251, 314, 478
HphI	GGTGA	1 cut(s)	768
Hpy166II	GTNNAC	3 cut(s)	531, 737, 915
Hpy188I	TCNGA	7 cut(s)	124, 278, 726, 799, 956, 972, 1025
Hpy188III	TCNNGA	7 cut(s)	37, 101, 343, 455, 574, 995, 1030
Hpy8I	GTNNAC	3 cut(s)	531, 737, 915
HpyAV	CCTTC	3 cut(s)	36, 117, 823
HpyCH4III	ACNGT	3 cut(s)	551, 787, 892
HpyCH4IV	ACGT	3 cut(s)	372, 423, 459
HpyCH4V	TGCA	3 cut(s)	361, 823, 1009
HpyF10VI	GCNNNNNNNGC	4 cut(s)	182, 605, 614, 872
HpyF3I	CTNAG	5 cut(s)	35, 517, 657, 769, 871
HpySE526I	ACGT	3 cut(s)	372, 423, 459
Hsp92II	CATG	3 cut(s)	289, 608, 935
HspAI	GCGC	1 cut(s)	48
Ksp22I	TGATCA	2 cut(s)	169, 601
Kzo9I	GATC	5 cut(s)	169, 601, 759, 879, 972
LguI	GCTCTTC	1 cut(s)	291
LmnI	GCTCC	2 cut(s)	15, 148
LweI	GCATC	2 cut(s)	586, 884
MaeI	CTAG	2 cut(s)	219, 995
MaeII	ACGT	3 cut(s)	372, 423, 459
MaeIII	GTNAC	4 cut(s)	154, 239, 442, 686
MalI	GATC	5 cut(s)	171, 603, 761, 881, 974
MboI	GATC	5 cut(s)	169, 601, 759, 879, 972
MboII	GAAGA	4 cut(s)	305, 308, 407, 846
MflI	RGATCY	1 cut(s)	972
MhlI	GDGCHC	3 cut(s)	100, 303, 380
MluCI	AATT	5 cut(s)	19, 329, 400, 508, 714
MlyI	GAGTC	1 cut(s)	243
MmeI	TCCRAC	2 cut(s)	570, 840
MseI	TTAA	3 cut(s)	336, 486, 887
MslI	CAYNNNNRTG	2 cut(s)	165, 177
MspCI	CTTAAG	1 cut(s)	485
MspI	CCGG	4 cut(s)	13, 251, 314, 478
MspR9I	CCNGG	6 cut(s)	252, 314, 492, 559, 962, 978
MvaI	CCWGG	4 cut(s)	492, 559, 962, 978
MwoI	GCNNNNNNNGC	4 cut(s)	182, 605, 614, 872
NciI	CCSGG	2 cut(s)	252, 314
NdeII	GATC	5 cut(s)	169, 601, 759, 879, 972
NlaIII	CATG	3 cut(s)	289, 608, 935
NlaIV	GGNNCC	2 cut(s)	144, 974
NmuCI	GTSAC	2 cut(s)	154, 239
PaqCI	CACCTGC	1 cut(s)	710
PciSI	GCTCTTC	1 cut(s)	291
PfeI	GAWTC	4 cut(s)	125, 481, 826, 1026
PflFI	GACNNNGTC	1 cut(s)	927
PfoI	TCCNGGA	1 cut(s)	557
PkrI	GCNGC	2 cut(s)	184, 868
PleI	GAGTC	1 cut(s)	242
PpsI	GAGTC	1 cut(s)	242
Psp124BI	GAGCTC	1 cut(s)	303
Psp6I	CCWGG	4 cut(s)	490, 557, 960, 976
PspGI	CCWGG	4 cut(s)	490, 557, 960, 976
PspN4I	GGNNCC	2 cut(s)	144, 974
PspPI	GGNCC	1 cut(s)	923
PstI	CTGCAG	1 cut(s)	1011
PsuI	RGATCY	1 cut(s)	972
PsyI	GACNNNGTC	1 cut(s)	927
RsaI	GTAC	3 cut(s)	197, 318, 982
RsaNI	GTAC	3 cut(s)	196, 317, 981
RseI	CAYNNNNRTG	2 cut(s)	165, 177
SacI	GAGCTC	1 cut(s)	303
SapI	GCTCTTC	1 cut(s)	291
SaqAI	TTAA	3 cut(s)	336, 486, 887
SatI	GCNGC	2 cut(s)	183, 867
Sau3AI	GATC	5 cut(s)	169, 601, 759, 879, 972
Sau96I	GGNCC	1 cut(s)	923
ScaI	AGTACT	1 cut(s)	197
SchI	GAGTC	1 cut(s)	243
ScrFI	CCNGG	6 cut(s)	252, 314, 492, 559, 962, 978
SduI	GDGCHC	3 cut(s)	100, 303, 380
SfaNI	GCATC	2 cut(s)	586, 884
SfcI	CTRYAG	1 cut(s)	1007
SinI	GGWCC	1 cut(s)	923
SmiMI	CAYNNNNRTG	2 cut(s)	165, 177
SmlI	CTYRAG	2 cut(s)	302, 485
SmoI	CTYRAG	2 cut(s)	302, 485
Sse9I	AATT	5 cut(s)	19, 329, 400, 508, 714
SsiI	CCGC	5 cut(s)	182, 230, 617, 653, 866
SspMI	CTAG	2 cut(s)	219, 995
SstI	GAGCTC	1 cut(s)	303
StyD4I	CCNGG	6 cut(s)	250, 312, 490, 557, 960, 976
StyI	CCWWGG	1 cut(s)	919
TaaI	ACNGT	3 cut(s)	551, 787, 892
TaiI	ACGT	3 cut(s)	375, 426, 462
TaqI	TCGA	5 cut(s)	435, 575, 829, 878, 1029
TasI	AATT	5 cut(s)	19, 329, 400, 508, 714
TatI	WGTACW	1 cut(s)	195
TauI	GCSGC	2 cut(s)	185, 869
TfiI	GAWTC	4 cut(s)	125, 481, 826, 1026
Tru1I	TTAA	3 cut(s)	336, 486, 887
Tru9I	TTAA	3 cut(s)	336, 486, 887
TscAI	CASTG	3 cut(s)	192, 232, 598
TseFI	GTSAC	2 cut(s)	154, 239
Tsp45I	GTSAC	2 cut(s)	154, 239
TspDTI	ATGAA	3 cut(s)	302, 306, 398
TspRI	CASTG	3 cut(s)	192, 232, 598
Tth111I	GACNNNGTC	1 cut(s)	927
Vha464I	CTTAAG	1 cut(s)	485
VpaK11BI	GGWCC	1 cut(s)	923
XagI	CCTNNNNNAGG	1 cut(s)	660
XapI	RAATTY	1 cut(s)	508
XbaI	TCTAGA	1 cut(s)	994
XcmI	CCANNNNNNNNNTGG	1 cut(s)	576
XmiI	GTMKAC	2 cut(s)	530, 736
XspI	CTAG	2 cut(s)	219, 995
ZrmI	AGTACT	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.