Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0007355

Physical Location & Seq

Genomic Coordinates Reverse (-)

6064168 .. 6065976

Gene Structure 1809 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1076700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGAACATGTCTGGTGCAGTTGGTGTCTGCAAGTGTGTCAAATTAAAGATAGTGAAGAATGTGGAATGCCCGCAGCAATTTCCCTTCAAGCCTCAGGATTTCCAGCGCTTTGATGAGAAAGAAAACCGCCAAGTTGTGGTTTATGCCTTTAGGTCATCGGATTCGGTGTTTTATGAGGCTCCACGCTTTGTGACACATATTGATGATCCCGCCATTGCGGCACTGACCAAGTACTACTCAAAGGTGTTTTCTCCTAGCAACACTGCGGGAGTCAGTCACTTTCCACCGGGATACAAGCAGGAGCGAATAATCGGAATGGGCATGAATGAAGAAGAGCTCAAGCACAACCCGTTTCAATTGTATCAGTCCTTGATTGGTCTTGACAACATATGCTGTGCAAGACTTGAACGTGAGCACAATCTTCCGTTTGAAGACAATTCCTTTCATATCATTACTAACGTGGTTAGTGTCGATTATGTAACAAAGCCTCTTGACGTTTTCAAGGAAATGTGCCGGATTCTTAAATCTTTCAGGTCTCCCCTCAACGAATTTAACTTAGCGAAAATATCTGCAAACAGCTTTTCCAACCGTTGTTCCTGGACTAAACCAATCTCGATATGGACATCAACCAGTGATGCTGATCATGCTTTGCTTGCGGGGCATATTTCCACTACGCTGGAGGATTTGAACCGCCTCAGGGAGCTCGTCTATTATTTTGTTCCAGTAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11

Protein Analysis

244

Amino Acids

27.83

Weight (kDa)

7.03

Isoelectric Point (pI)

45.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29590
fragaria_vesca	FvH4_1g07220 FvH4_1g07220 FvH4_1g07220 FvH4_1g07220 FvH4_1g07220 FvH4_1g07220 FvH4_2g04400
malus_domestica	MD02G1076700.v1.1 MD15G1205400.v1.1
prunus_persica	Prupe.7G211700_v2.0.a1 Prupe.7G211700_v2.0.a1 Prupe.7G211700_v2.0.a1
pyrus_communis	pycom02g06110 pycom15g18220
rosa_chinensis	RchiOBHm_Chr2g0093121
rosa_laevigata	RLG00000016370
rosa_multiflora	Rmu_sc0006865.1_g000012
rosa_roxburghii	Rroxscaffold_2G00148490
rosa_rugosa	Rorug02G0032900 Rorug02G0033000
rosa_samantha	Rh2BG079900 Rh2CG082100 Rh2DG077200
rosa_wichuraiana	Rw2G006800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	136
AciI	CCGC	7 cut(s)	71, 127, 210, 218, 266, 656, 691
AclWI	GGATC	1 cut(s)	200
AcsI	RAATTY	1 cut(s)	548
AfaI	GTAC	1 cut(s)	233
AfeI	AGCGCT	1 cut(s)	107
AfiI	CCNNNNNNNGG	2 cut(s)	136, 697
AflIII	ACRYGT	1 cut(s)	6
AgsI	TTSAA	6 cut(s)	88, 356, 407, 431, 502, 688
AjnI	CCWGG	1 cut(s)	596
AluBI	AGCT	3 cut(s)	337, 579, 703
AluI	AGCT	3 cut(s)	337, 579, 703
Alw21I	GWGCWC	3 cut(s)	339, 417, 705
Alw26I	GTCTC	1 cut(s)	540
AlwI	GGATC	1 cut(s)	200
Aor51HI	AGCGCT	1 cut(s)	107
ApeKI	GCWGC	1 cut(s)	73
ApoI	RAATTY	1 cut(s)	548
AspLEI	GCGC	1 cut(s)	108
AsuC2I	CCSGG	1 cut(s)	288
AxyI	CCTNAGG	2 cut(s)	93, 695
BanII	GRGCYC	2 cut(s)	339, 705
BbsI	GAAGAC	1 cut(s)	438
Bbv12I	GWGCWC	3 cut(s)	339, 417, 705
BbvI	GCAGC	1 cut(s)	85
BciT130I	CCWGG	1 cut(s)	598
BciVI	GTATCC	1 cut(s)	284
BclI	TGATCA	1 cut(s)	640
BcnI	CCSGG	1 cut(s)	288
BcoDI	GTCTC	1 cut(s)	540
BfaI	CTAG	1 cut(s)	255
BfoI	RGCGCY	1 cut(s)	109
BfuI	GTATCC	1 cut(s)	284
BglI	GCCNNNNNGGC	1 cut(s)	218
BisI	GCNGC	2 cut(s)	74, 219
BlsI	GCNGC	2 cut(s)	75, 220
BmcAI	AGTACT	1 cut(s)	233
Bme1390I	CCNGG	2 cut(s)	288, 598
BmiI	GGNNCC	1 cut(s)	180
BmrFI	CCNGG	2 cut(s)	288, 598
BmsI	GCATC	1 cut(s)	625
BpiI	GAAGAC	1 cut(s)	438
BpmI	CTGGAG	1 cut(s)	698
BpuEI	CTTGAG	1 cut(s)	323
BpuMI	CCSGG	1 cut(s)	288
BsaBI	GATNNNNATC	1 cut(s)	639
BsaI	GGTCTC	1 cut(s)	540
Bsc4I	CCNNNNNNNGG	2 cut(s)	136, 697
Bse1I	ACTGG	2 cut(s)	630, 722
Bse21I	CCTNAGG	2 cut(s)	93, 695
Bse3DI	GCAATG	1 cut(s)	213
Bse8I	GATNNNNATC	1 cut(s)	639
BseBI	CCWGG	1 cut(s)	598
BseJI	GATNNNNATC	1 cut(s)	639
BseLI	CCNNNNNNNGG	2 cut(s)	136, 697
BseMI	GCAATG	1 cut(s)	213
BseMII	CTCAG	2 cut(s)	107, 709
BseNI	ACTGG	2 cut(s)	630, 722
BseXI	GCAGC	1 cut(s)	85
BsgI	GTGCAG	1 cut(s)	36
BsiHKAI	GWGCWC	3 cut(s)	339, 417, 705
BsiSI	CCGG	2 cut(s)	287, 514
BslI	CCNNNNNNNGG	2 cut(s)	136, 697
BsmAI	GTCTC	1 cut(s)	540
BsmI	GAATGC	1 cut(s)	71
Bso31I	GGTCTC	1 cut(s)	540
Bsp1286I	GDGCHC	3 cut(s)	339, 417, 705
Bsp143I	GATC	2 cut(s)	205, 640
BspACI	CCGC	7 cut(s)	71, 127, 210, 218, 266, 656, 691
BspCNI	CTCAG	2 cut(s)	106, 708
BspLI	GGNNCC	1 cut(s)	180
BspPI	GGATC	1 cut(s)	200
BspQI	GCTCTTC	1 cut(s)	327
BspTNI	GGTCTC	1 cut(s)	540
BsrDI	GCAATG	1 cut(s)	213
BsrI	ACTGG	2 cut(s)	630, 722
BssMI	GATC	2 cut(s)	205, 640
Bst2UI	CCWGG	1 cut(s)	598
Bst4CI	ACNGT	1 cut(s)	590
Bst6I	CTCTTC	1 cut(s)	327
BstC8I	GCNNGC	2 cut(s)	71, 654
BstDEI	CTNAG	3 cut(s)	93, 556, 695
BstH2I	RGCGCY	1 cut(s)	109
BstHHI	GCGC	1 cut(s)	108
BstKTI	GATC	2 cut(s)	208, 643
BstMAI	GTCTC	1 cut(s)	540
BstMBI	GATC	2 cut(s)	205, 640
BstMWI	GCNNNNNNNGC	4 cut(s)	218, 644, 653, 658
BstNI	CCWGG	1 cut(s)	598
BstNSI	RCATGY	1 cut(s)	10
BstSCI	CCNGG	2 cut(s)	286, 596
BstV1I	GCAGC	1 cut(s)	85
BstV2I	GAAGAC	1 cut(s)	438
BstXI	CCANNNNNNTGG	1 cut(s)	676
Bsu36I	CCTNAGG	2 cut(s)	93, 695
BsuI	GTATCC	1 cut(s)	284
BtsI	GCAGTG	1 cut(s)	261
BtsIMutI	CAGTG	3 cut(s)	221, 261, 637
Cac8I	GCNNGC	2 cut(s)	71, 654
CfoI	GCGC	1 cut(s)	108
Csp6I	GTAC	1 cut(s)	232
CviAII	CATG	3 cut(s)	7, 322, 644
CviJI	RGCY	6 cut(s)	91, 179, 337, 487, 579, 703
CviKI_1	RGCY	6 cut(s)	91, 179, 337, 487, 579, 703
CviQI	GTAC	1 cut(s)	232
DdeI	CTNAG	3 cut(s)	93, 556, 695
DpnI	GATC	2 cut(s)	207, 642
DpnII	GATC	2 cut(s)	205, 640
Eam1104I	CTCTTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	327
Ecl136II	GAGCTC	2 cut(s)	337, 703
Eco24I	GRGCYC	2 cut(s)	339, 705
Eco31I	GGTCTC	1 cut(s)	540
Eco47III	AGCGCT	1 cut(s)	107
Eco53kI	GAGCTC	2 cut(s)	337, 703
Eco81I	CCTNAGG	2 cut(s)	93, 695
EcoICRI	GAGCTC	2 cut(s)	337, 703
EcoRII	CCWGG	1 cut(s)	596
EcoT38I	GRGCYC	2 cut(s)	339, 705
FaeI	CATG	3 cut(s)	10, 325, 647
FatI	CATG	3 cut(s)	6, 321, 643
FauI	CCCGC	4 cut(s)	78, 217, 259, 649
FauNDI	CATATG	1 cut(s)	389
FbaI	TGATCA	1 cut(s)	640
Fnu4HI	GCNGC	2 cut(s)	74, 219
FriOI	GRGCYC	2 cut(s)	339, 705
Fsp4HI	GCNGC	2 cut(s)	74, 219
FspBI	CTAG	1 cut(s)	255
GlaI	GCGC	1 cut(s)	107
GluI	GCNGC	2 cut(s)	74, 219
GsuI	CTGGAG	1 cut(s)	698
HaeII	RGCGCY	1 cut(s)	109
HapII	CCGG	2 cut(s)	287, 514
HhaI	GCGC	1 cut(s)	108
Hin1II	CATG	3 cut(s)	10, 325, 647
Hin6I	GCGC	1 cut(s)	106
HinP1I	GCGC	1 cut(s)	106
HinfI	GANTC	3 cut(s)	161, 270, 517
HpaII	CCGG	2 cut(s)	287, 514
Hpy188I	TCNGA	2 cut(s)	160, 314
Hpy188III	TCNNGA	4 cut(s)	95, 380, 491, 613
HpyAV	CCTTC	1 cut(s)	94
HpyCH4III	ACNGT	1 cut(s)	590
HpyCH4IV	ACGT	3 cut(s)	409, 459, 495
HpyCH4V	TGCA	4 cut(s)	17, 30, 398, 572
HpyF10VI	GCNNNNNNNGC	4 cut(s)	218, 644, 653, 658
HpyF3I	CTNAG	3 cut(s)	93, 556, 695
HpySE526I	ACGT	3 cut(s)	409, 459, 495
Hsp92II	CATG	3 cut(s)	10, 325, 647
HspAI	GCGC	1 cut(s)	106
Ksp22I	TGATCA	1 cut(s)	640
Kzo9I	GATC	2 cut(s)	205, 640
LguI	GCTCTTC	1 cut(s)	327
LmnI	GCTCC	3 cut(s)	184, 301, 700
Lsp1109I	GCAGC	1 cut(s)	85
LweI	GCATC	1 cut(s)	625
MaeI	CTAG	1 cut(s)	255
MaeII	ACGT	3 cut(s)	409, 459, 495
MaeIII	GTNAC	4 cut(s)	190, 275, 478, 724
MalI	GATC	2 cut(s)	207, 642
MboI	GATC	2 cut(s)	205, 640
MboII	GAAGA	5 cut(s)	67, 341, 344, 413, 443
MfeI	CAATTG	1 cut(s)	356
MhlI	GDGCHC	3 cut(s)	339, 417, 705
MluCI	AATT	5 cut(s)	41, 77, 356, 436, 548
MlyI	GAGTC	1 cut(s)	279
MmeI	TCCRAC	1 cut(s)	609
MnlI	CCTC	6 cut(s)	102, 169, 498, 551, 673, 704
MseI	TTAA	3 cut(s)	44, 522, 552
MslI	CAYNNNNRTG	1 cut(s)	201
MspI	CCGG	2 cut(s)	287, 514
MspR9I	CCNGG	2 cut(s)	288, 598
MunI	CAATTG	1 cut(s)	356
Mva1269I	GAATGC	1 cut(s)	71
MvaI	CCWGG	1 cut(s)	598
MwoI	GCNNNNNNNGC	4 cut(s)	218, 644, 653, 658
NciI	CCSGG	1 cut(s)	288
NdeI	CATATG	1 cut(s)	389
NdeII	GATC	2 cut(s)	205, 640
NlaIII	CATG	3 cut(s)	10, 325, 647
NlaIV	GGNNCC	1 cut(s)	180
NmuCI	GTSAC	2 cut(s)	190, 275
NspI	RCATGY	1 cut(s)	10
PciI	ACATGT	1 cut(s)	6
PciSI	GCTCTTC	1 cut(s)	327
PctI	GAATGC	1 cut(s)	71
PfeI	GAWTC	2 cut(s)	161, 517
PflMI	CCANNNNNTGG	1 cut(s)	136
PfoI	TCCNGGA	1 cut(s)	596
PkrI	GCNGC	2 cut(s)	75, 220
PleI	GAGTC	1 cut(s)	278
PpsI	GAGTC	1 cut(s)	278
PscI	ACATGT	1 cut(s)	6
Psp124BI	GAGCTC	2 cut(s)	339, 705
Psp6I	CCWGG	1 cut(s)	596
PspGI	CCWGG	1 cut(s)	596
PspN4I	GGNNCC	1 cut(s)	180
RsaI	GTAC	1 cut(s)	233
RsaNI	GTAC	1 cut(s)	232
RseI	CAYNNNNRTG	1 cut(s)	201
SacI	GAGCTC	2 cut(s)	339, 705
SapI	GCTCTTC	1 cut(s)	327
SaqAI	TTAA	3 cut(s)	44, 522, 552
SatI	GCNGC	2 cut(s)	74, 219
Sau3AI	GATC	2 cut(s)	205, 640
ScaI	AGTACT	1 cut(s)	233
SchI	GAGTC	1 cut(s)	279
ScrFI	CCNGG	2 cut(s)	288, 598
SduI	GDGCHC	3 cut(s)	339, 417, 705
SetI	ASST	9 cut(s)	155, 246, 339, 412, 462, 498, 536, 581, 705
SfaNI	GCATC	1 cut(s)	625
SmiMI	CAYNNNNRTG	1 cut(s)	201
SmlI	CTYRAG	1 cut(s)	338
SmoI	CTYRAG	1 cut(s)	338
Sse9I	AATT	5 cut(s)	41, 77, 356, 436, 548
SsiI	CCGC	7 cut(s)	71, 127, 210, 218, 266, 656, 691
SspMI	CTAG	1 cut(s)	255
SstI	GAGCTC	2 cut(s)	339, 705
StyD4I	CCNGG	2 cut(s)	286, 596
TaaI	ACNGT	1 cut(s)	590
TaiI	ACGT	3 cut(s)	412, 462, 498
TaqI	TCGA	2 cut(s)	471, 614
TasI	AATT	5 cut(s)	41, 77, 356, 436, 548
TatI	WGTACW	1 cut(s)	231
TauI	GCSGC	1 cut(s)	221
TfiI	GAWTC	2 cut(s)	161, 517
Tru1I	TTAA	3 cut(s)	44, 522, 552
Tru9I	TTAA	3 cut(s)	44, 522, 552
TscAI	CASTG	3 cut(s)	228, 268, 637
TseFI	GTSAC	2 cut(s)	190, 275
TseI	GCWGC	1 cut(s)	73
Tsp45I	GTSAC	2 cut(s)	190, 275
TspDTI	ATGAA	4 cut(s)	17, 338, 342, 434
TspGWI	ACGGA	1 cut(s)	414
TspRI	CASTG	3 cut(s)	228, 268, 637
Van91I	CCANNNNNTGG	1 cut(s)	136
XapI	RAATTY	1 cut(s)	548
XceI	RCATGY	1 cut(s)	10
XcmI	CCANNNNNNNNNTGG	1 cut(s)	615
XspI	CTAG	1 cut(s)	255
ZrmI	AGTACT	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.