Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0007355

Physical Location & Seq

Genomic Coordinates Reverse (-)

16327773 .. 16330783

Gene Structure 3011 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1205400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGCCAAATGCATGGGTCTCAGAGTCCATCAGTTACCCATTTTGGCGGGTATATGTCCTTGTTCTTCTTCTTATTTAGTTCCTAGAGCTAGAGCTGCTGGCTCAGTTCCCATTTCATCAAAGGTTGACAACAAGTGGAAAAGTGGAGGGAGAGCTCCCCGCCGTCTGATCTTGGGCCTTGGAGTCTCGTTTTGGGCCCAGTTGATGAACATGTCTGGTGCGGTTGGTGGGAAATCTTTCACTGCTTCTGCAAGGTTGAAGAGCGGCCCTTCTTTTGAAGAGATACTGAAGAATGTGGAATGGCCGGAGCAATTTCCCTTCAAGCCTGAGGATTTCCAGCGCTTTGATGAGTCATCGGATTCGGTGTTTTATGAGACTCCACGCTTTGTGACACATATTGATGATCCCGCCATTGCGGCACTGACCAAGTACTACTCAAAAGTGTTTCCTCCTAGCAATACTCCAGGAGTAAGCATGTTGGACATGTGTAGCAGTTGGGTCAGTCACTTTCCACCGGGATACAAGCAAGAGCGAATAGTGGGAATGGGGATGAATGAAGAAGAGCTAAAGCGCAATCCGGTCTTGACAGCGTATGTTGTGCAAGACTTGAATGTGAACCCCAAACTTCCCTTTGAAGACAATTCCTTTGATGTGATTACTAATGTGGTTAGCGTTGATTACATCACAAAGCCTCTTGACGTTTTCAAGGAAATGTGCCGGATTCTTAAGCCAGGTGGACTTGCTATAATGAGCTTTTCCAACCGTTGTTTCTGGACTAAAGCAATCTCAATATGGACATCAACCGGTGATGCTGATCATGGTTTGATTGTGGGGGCATATTTCCACTACGCTGGAGGATTTGAACCACCTCAGGCTGTGGATATATCCCCGAACCCTGGACGCTCAGATCCTATGTACATTGTATACTCTAGAAAATTATCTACGGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11

Protein Analysis

317

Amino Acids

35.03

Weight (kDa)

8.43

Isoelectric Point (pI)

42.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_11	PF08241	187 - 249	9e-11	Methyltransferase domain
Methyltransf_25	PF13649	191 - 246	4.2e-06	Methyltransferase domain
Ubie_methyltran	PF01209	207 - 254	6.6e-06	ubiE/COQ5 methyltransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29590
fragaria_vesca	FvH4_1g07220 FvH4_1g07220 FvH4_1g07220 FvH4_1g07220 FvH4_1g07220 FvH4_1g07220 FvH4_2g04400
malus_domestica	MD02G1076700.v1.1 MD15G1205400.v1.1
prunus_persica	Prupe.7G211700_v2.0.a1 Prupe.7G211700_v2.0.a1 Prupe.7G211700_v2.0.a1
pyrus_communis	pycom02g06110 pycom15g18220
rosa_chinensis	RchiOBHm_Chr2g0093121
rosa_laevigata	RLG00000016370
rosa_multiflora	Rmu_sc0006865.1_g000012
rosa_roxburghii	Rroxscaffold_2G00148490
rosa_rugosa	Rorug02G0032900 Rorug02G0033000
rosa_samantha	Rh2BG079900 Rh2CG082100 Rh2DG077200
rosa_wichuraiana	Rw2G006800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	264
AccI	GTMKAC	1 cut(s)	924
AciI	CCGC	6 cut(s)	47, 160, 221, 264, 408, 416
AclWI	GGATC	2 cut(s)	398, 902
AcoI	YGGCCR	2 cut(s)	3, 302
AcuI	CTGAAG	1 cut(s)	308
AfaI	GTAC	2 cut(s)	431, 917
AfeI	AGCGCT	1 cut(s)	341
AfiI	CCNNNNNNNGG	1 cut(s)	896
AflII	CTTAAG	1 cut(s)	725
AflIII	ACRYGT	2 cut(s)	210, 483
AgeI	ACCGGT	1 cut(s)	803
AgsI	TTSAA	7 cut(s)	259, 278, 322, 610, 635, 706, 863
AjnI	CCWGG	3 cut(s)	463, 730, 895
AjuI	GAANNNNNNNTTGG	2 cut(s)	752, 784
AluBI	AGCT	5 cut(s)	89, 95, 155, 565, 753
AluI	AGCT	5 cut(s)	89, 95, 155, 565, 753
Alw21I	GWGCWC	1 cut(s)	157
Alw26I	GTCTC	3 cut(s)	23, 190, 368
AlwI	GGATC	2 cut(s)	398, 902
Aor51HI	AGCGCT	1 cut(s)	341
AoxI	GGCC	5 cut(s)	3, 175, 195, 265, 302
ApaI	GGGCCC	1 cut(s)	199
ApeKI	GCWGC	1 cut(s)	95
ArsI	GACNNNNNNTTYG	2 cut(s)	629, 661
AsiGI	ACCGGT	1 cut(s)	803
Asp700I	GAANNNNTTC	1 cut(s)	236
AspLEI	GCGC	2 cut(s)	342, 573
AspS9I	GGNCC	4 cut(s)	175, 195, 196, 266
AsuC2I	CCSGG	1 cut(s)	516
AsuHPI	GGTGA	1 cut(s)	818
AxyI	CCTNAGG	2 cut(s)	327, 870
BaeGI	GKGCMC	1 cut(s)	199
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	2 cut(s)	157, 199
BbsI	GAAGAC	1 cut(s)	642
Bbv12I	GWGCWC	1 cut(s)	157
BbvI	GCAGC	1 cut(s)	82
BccI	CCATC	1 cut(s)	36
BceAI	ACGGC	1 cut(s)	147
BciT130I	CCWGG	3 cut(s)	465, 732, 897
BciVI	GTATCC	1 cut(s)	512
BclI	TGATCA	1 cut(s)	814
BcnI	CCSGG	1 cut(s)	516
BcoDI	GTCTC	3 cut(s)	23, 190, 368
BfaI	CTAG	4 cut(s)	84, 90, 453, 930
BfoI	RGCGCY	1 cut(s)	343
BfrI	CTTAAG	1 cut(s)	725
BfuI	GTATCC	1 cut(s)	512
BglI	GCCNNNNNGGC	1 cut(s)	416
BisI	GCNGC	3 cut(s)	96, 265, 417
BlsI	GCNGC	3 cut(s)	97, 266, 418
BmcAI	AGTACT	1 cut(s)	431
Bme1390I	CCNGG	4 cut(s)	465, 516, 732, 897
BmgT120I	GGNCC	4 cut(s)	175, 195, 196, 266
BmiI	GGNNCC	1 cut(s)	197
BmrFI	CCNGG	4 cut(s)	465, 516, 732, 897
BmrI	ACTGGG	1 cut(s)	193
BmsI	GCATC	1 cut(s)	799
BmuI	ACTGGG	1 cut(s)	193
BpiI	GAAGAC	1 cut(s)	642
BpmI	CTGGAG	2 cut(s)	447, 873
BpuMI	CCSGG	1 cut(s)	516
BsaBI	GATNNNNATC	1 cut(s)	813
BsaI	GGTCTC	1 cut(s)	23
BsaJI	CCNNGG	2 cut(s)	178, 895
BsaWI	WCCGGW	2 cut(s)	577, 803
Bsc4I	CCNNNNNNNGG	1 cut(s)	896
Bse118I	RCCGGY	1 cut(s)	803
Bse1I	ACTGG	1 cut(s)	199
Bse21I	CCTNAGG	2 cut(s)	327, 870
Bse3DI	GCAATG	1 cut(s)	411
Bse8I	GATNNNNATC	1 cut(s)	813
BseBI	CCWGG	3 cut(s)	465, 732, 897
BseDI	CCNNGG	2 cut(s)	178, 895
BseGI	GGATG	1 cut(s)	555
BseJI	GATNNNNATC	1 cut(s)	813
BseLI	CCNNNNNNNGG	1 cut(s)	896
BseMI	GCAATG	1 cut(s)	411
BseMII	CTCAG	5 cut(s)	34, 117, 318, 884, 918
BseNI	ACTGG	1 cut(s)	199
BseSI	GKGCMC	1 cut(s)	199
BseXI	GCAGC	1 cut(s)	82
BshFI	GGCC	5 cut(s)	5, 177, 197, 267, 304
BshTI	ACCGGT	1 cut(s)	803
BsiHKAI	GWGCWC	1 cut(s)	157
BsiSI	CCGG	5 cut(s)	305, 515, 578, 718, 804
BslI	CCNNNNNNNGG	1 cut(s)	896
BsmAI	GTCTC	3 cut(s)	23, 190, 368
BsnI	GGCC	5 cut(s)	5, 177, 197, 267, 304
Bso31I	GGTCTC	1 cut(s)	23
Bsp120I	GGGCCC	1 cut(s)	195
Bsp1286I	GDGCHC	2 cut(s)	157, 199
Bsp1407I	TGTACA	1 cut(s)	915
Bsp143I	GATC	4 cut(s)	168, 403, 814, 907
BspACI	CCGC	6 cut(s)	47, 160, 221, 264, 408, 416
BspANI	GGCC	5 cut(s)	5, 177, 197, 267, 304
BspCNI	CTCAG	5 cut(s)	33, 116, 319, 883, 917
BspLI	GGNNCC	1 cut(s)	197
BspPI	GGATC	2 cut(s)	398, 902
BspQI	GCTCTTC	2 cut(s)	254, 555
BspTI	CTTAAG	1 cut(s)	725
BspTNI	GGTCTC	1 cut(s)	23
BsrBI	CCGCTC	1 cut(s)	264
BsrDI	GCAATG	1 cut(s)	411
BsrFI	RCCGGY	1 cut(s)	803
BsrGI	TGTACA	1 cut(s)	915
BsrI	ACTGG	1 cut(s)	199
BssAI	RCCGGY	1 cut(s)	803
BssECI	CCNNGG	2 cut(s)	178, 895
BssMI	GATC	4 cut(s)	168, 403, 814, 907
BssNAI	GTATAC	1 cut(s)	925
BssT1I	CCWWGG	1 cut(s)	178
Bst1107I	GTATAC	1 cut(s)	925
Bst2UI	CCWGG	3 cut(s)	465, 732, 897
Bst4CI	ACNGT	2 cut(s)	764, 946
Bst6I	CTCTTC	3 cut(s)	254, 273, 555
BstAFI	CTTAAG	1 cut(s)	725
BstAUI	TGTACA	1 cut(s)	915
BstC8I	GCNNGC	1 cut(s)	100
BstDEI	CTNAG	5 cut(s)	20, 103, 327, 870, 904
BstF5I	GGATG	1 cut(s)	555
BstH2I	RGCGCY	1 cut(s)	343
BstHHI	GCGC	2 cut(s)	342, 573
BstKTI	GATC	4 cut(s)	171, 406, 817, 910
BstMAI	GTCTC	3 cut(s)	23, 190, 368
BstMBI	GATC	4 cut(s)	168, 403, 814, 907
BstMWI	GCNNNNNNNGC	2 cut(s)	95, 416
BstNI	CCWGG	3 cut(s)	465, 732, 897
BstNSI	RCATGY	3 cut(s)	214, 478, 487
BstSCI	CCNGG	4 cut(s)	463, 514, 730, 895
BstSLI	GKGCMC	1 cut(s)	199
BstV1I	GCAGC	1 cut(s)	82
BstV2I	GAAGAC	1 cut(s)	642
BstX2I	RGATCY	1 cut(s)	907
BstXI	CCANNNNNNTGG	2 cut(s)	13, 851
BstYI	RGATCY	1 cut(s)	907
BstZ17I	GTATAC	1 cut(s)	925
Bsu36I	CCTNAGG	2 cut(s)	327, 870
BsuI	GTATCC	1 cut(s)	512
BsuRI	GGCC	5 cut(s)	5, 177, 197, 267, 304
BtsCI	GGATG	1 cut(s)	555
BtsI	GCAGTG	1 cut(s)	240
BtsIMutI	CAGTG	2 cut(s)	240, 419
Cac8I	GCNNGC	1 cut(s)	100
CfoI	GCGC	2 cut(s)	342, 573
Cfr10I	RCCGGY	1 cut(s)	803
Cfr13I	GGNCC	4 cut(s)	175, 195, 196, 266
CseI	GACGC	1 cut(s)	909
Csp6I	GTAC	2 cut(s)	430, 916
CspAI	ACCGGT	1 cut(s)	803
CviAII	CATG	5 cut(s)	13, 211, 475, 484, 818
CviQI	GTAC	2 cut(s)	430, 916
DdeI	CTNAG	5 cut(s)	20, 103, 327, 870, 904
DpnI	GATC	4 cut(s)	170, 405, 816, 909
DpnII	GATC	4 cut(s)	168, 403, 814, 907
EaeI	YGGCCR	2 cut(s)	3, 302
Eam1104I	CTCTTC	3 cut(s)	254, 273, 555
EarI	CTCTTC	3 cut(s)	254, 273, 555
Ecl136II	GAGCTC	1 cut(s)	155
Eco130I	CCWWGG	1 cut(s)	178
Eco24I	GRGCYC	2 cut(s)	157, 199
Eco31I	GGTCTC	1 cut(s)	23
Eco47III	AGCGCT	1 cut(s)	341
Eco53kI	GAGCTC	1 cut(s)	155
Eco57I	CTGAAG	1 cut(s)	308
Eco81I	CCTNAGG	2 cut(s)	327, 870
EcoICRI	GAGCTC	1 cut(s)	155
EcoRII	CCWGG	3 cut(s)	463, 730, 895
EcoT14I	CCWWGG	1 cut(s)	178
EcoT22I	ATGCAT	1 cut(s)	14
EcoT38I	GRGCYC	2 cut(s)	157, 199
ErhI	CCWWGG	1 cut(s)	178
FaeI	CATG	5 cut(s)	16, 214, 478, 487, 821
FatI	CATG	5 cut(s)	12, 210, 474, 483, 817
FauI	CCCGC	3 cut(s)	40, 167, 415
FbaI	TGATCA	1 cut(s)	814
FblI	GTMKAC	1 cut(s)	924
Fnu4HI	GCNGC	3 cut(s)	96, 265, 417
FokI	GGATG	1 cut(s)	562
FriOI	GRGCYC	2 cut(s)	157, 199
Fsp4HI	GCNGC	3 cut(s)	96, 265, 417
FspBI	CTAG	4 cut(s)	84, 90, 453, 930
GlaI	GCGC	2 cut(s)	341, 572
GluI	GCNGC	3 cut(s)	96, 265, 417
GsuI	CTGGAG	2 cut(s)	447, 873
HaeII	RGCGCY	1 cut(s)	343
HaeIII	GGCC	5 cut(s)	5, 177, 197, 267, 304
HapII	CCGG	5 cut(s)	305, 515, 578, 718, 804
HgaI	GACGC	1 cut(s)	909
HhaI	GCGC	2 cut(s)	342, 573
Hin1II	CATG	5 cut(s)	16, 214, 478, 487, 821
Hin6I	GCGC	2 cut(s)	340, 571
HinP1I	GCGC	2 cut(s)	340, 571
HincII	GTYRAC	1 cut(s)	127
HindII	GTYRAC	1 cut(s)	127
HinfI	GANTC	6 cut(s)	24, 183, 350, 359, 376, 721
HpaII	CCGG	5 cut(s)	305, 515, 578, 718, 804
HphI	GGTGA	1 cut(s)	818
Hpy166II	GTNNAC	4 cut(s)	127, 616, 737, 925
Hpy188I	TCNGA	4 cut(s)	23, 168, 358, 907
Hpy188III	TCNNGA	4 cut(s)	583, 695, 772, 930
Hpy8I	GTNNAC	4 cut(s)	127, 616, 737, 925
HpyAV	CCTTC	2 cut(s)	279, 328
HpyCH4III	ACNGT	2 cut(s)	764, 946
HpyCH4IV	ACGT	1 cut(s)	699
HpyCH4V	TGCA	3 cut(s)	12, 251, 601
HpyF10VI	GCNNNNNNNGC	2 cut(s)	95, 416
HpyF3I	CTNAG	5 cut(s)	20, 103, 327, 870, 904
HpySE526I	ACGT	1 cut(s)	699
Hsp92II	CATG	5 cut(s)	16, 214, 478, 487, 821
HspAI	GCGC	2 cut(s)	340, 571
Ksp22I	TGATCA	1 cut(s)	814
Kzo9I	GATC	4 cut(s)	168, 403, 814, 907
LguI	GCTCTTC	2 cut(s)	254, 555
LmnI	GCTCC	2 cut(s)	160, 307
Lsp1109I	GCAGC	1 cut(s)	82
LweI	GCATC	1 cut(s)	799
MaeI	CTAG	4 cut(s)	84, 90, 453, 930
MaeII	ACGT	1 cut(s)	699
MaeIII	GTNAC	3 cut(s)	33, 388, 503
MalI	GATC	4 cut(s)	170, 405, 816, 909
MbiI	CCGCTC	1 cut(s)	264
MboI	GATC	4 cut(s)	168, 403, 814, 907
MboII	GAAGA	8 cut(s)	57, 60, 271, 290, 301, 569, 572, 647
MflI	RGATCY	1 cut(s)	907
MhlI	GDGCHC	2 cut(s)	157, 199
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	311, 640, 935
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	4 cut(s)	33, 192, 359, 370
MmeI	TCCRAC	2 cut(s)	459, 783
MnlI	CCTC	6 cut(s)	140, 322, 459, 702, 848, 879
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	14
MroXI	GAANNNNTTC	1 cut(s)	236
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	726
MslI	CAYNNNNRTG	1 cut(s)	399
Msp20I	TGGCCA	1 cut(s)	5
MspCI	CTTAAG	1 cut(s)	725
MspI	CCGG	5 cut(s)	305, 515, 578, 718, 804
MspR9I	CCNGG	4 cut(s)	465, 516, 732, 897
MvaI	CCWGG	3 cut(s)	465, 732, 897
MwoI	GCNNNNNNNGC	2 cut(s)	95, 416
NciI	CCSGG	1 cut(s)	516
NdeII	GATC	4 cut(s)	168, 403, 814, 907
NlaIII	CATG	5 cut(s)	16, 214, 478, 487, 821
NlaIV	GGNNCC	1 cut(s)	197
NmuCI	GTSAC	2 cut(s)	388, 503
NsiI	ATGCAT	1 cut(s)	14
NspI	RCATGY	3 cut(s)	214, 478, 487
PciI	ACATGT	2 cut(s)	210, 483
PciSI	GCTCTTC	2 cut(s)	254, 555
PdmI	GAANNNNTTC	1 cut(s)	236
PfeI	GAWTC	2 cut(s)	359, 721
PfoI	TCCNGGA	1 cut(s)	463
PinAI	ACCGGT	1 cut(s)	803
PkrI	GCNGC	3 cut(s)	97, 266, 418
PleI	GAGTC	4 cut(s)	32, 191, 358, 370
PpsI	GAGTC	4 cut(s)	32, 191, 358, 370
PscI	ACATGT	2 cut(s)	210, 483
Psp124BI	GAGCTC	1 cut(s)	157
Psp6I	CCWGG	3 cut(s)	463, 730, 895
PspGI	CCWGG	3 cut(s)	463, 730, 895
PspN4I	GGNNCC	1 cut(s)	197
PspOMI	GGGCCC	1 cut(s)	195
PspPI	GGNCC	4 cut(s)	175, 195, 196, 266
PsuI	RGATCY	1 cut(s)	907
RsaI	GTAC	2 cut(s)	431, 917
RsaNI	GTAC	2 cut(s)	430, 916
RseI	CAYNNNNRTG	1 cut(s)	399
SacI	GAGCTC	1 cut(s)	157
SapI	GCTCTTC	2 cut(s)	254, 555
SaqAI	TTAA	1 cut(s)	726
SatI	GCNGC	3 cut(s)	96, 265, 417
Sau3AI	GATC	4 cut(s)	168, 403, 814, 907
Sau96I	GGNCC	4 cut(s)	175, 195, 196, 266
ScaI	AGTACT	1 cut(s)	431
SchI	GAGTC	4 cut(s)	33, 192, 359, 370
ScrFI	CCNGG	4 cut(s)	465, 516, 732, 897
SduI	GDGCHC	2 cut(s)	157, 199
SfaNI	GCATC	1 cut(s)	799
SmiMI	CAYNNNNRTG	1 cut(s)	399
SmlI	CTYRAG	1 cut(s)	725
SmoI	CTYRAG	1 cut(s)	725
Sse9I	AATT	3 cut(s)	311, 640, 935
SsiI	CCGC	6 cut(s)	47, 160, 221, 264, 408, 416
SspMI	CTAG	4 cut(s)	84, 90, 453, 930
SstI	GAGCTC	1 cut(s)	157
StyD4I	CCNGG	4 cut(s)	463, 514, 730, 895
StyI	CCWWGG	1 cut(s)	178
TaaI	ACNGT	2 cut(s)	764, 946
TaiI	ACGT	1 cut(s)	702
TasI	AATT	3 cut(s)	311, 640, 935
TatI	WGTACW	2 cut(s)	429, 915
TauI	GCSGC	2 cut(s)	267, 419
TfiI	GAWTC	2 cut(s)	359, 721
Tru1I	TTAA	1 cut(s)	726
Tru9I	TTAA	1 cut(s)	726
TscAI	CASTG	2 cut(s)	247, 426
TseFI	GTSAC	2 cut(s)	388, 503
TseI	GCWGC	1 cut(s)	95
Tsp45I	GTSAC	2 cut(s)	388, 503
TspDTI	ATGAA	4 cut(s)	105, 221, 566, 570
TspRI	CASTG	2 cut(s)	247, 426
Vha464I	CTTAAG	1 cut(s)	725
XbaI	TCTAGA	1 cut(s)	929
XceI	RCATGY	3 cut(s)	214, 478, 487
XmiI	GTMKAC	1 cut(s)	924
XmnI	GAANNNNTTC	1 cut(s)	236
XspI	CTAG	4 cut(s)	84, 90, 453, 930
ZrmI	AGTACT	1 cut(s)	431
Zsp2I	ATGCAT	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.