RchiOBHm_Chr2g0093121

ubiE/COQ5 methyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0007355
Physical Location & Seq
Reverse (-)
6449966 .. 6452816
2851 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46819

Sequence Viewer

Length: 1098 bp
ATGTGGCAAAATGTGATCCAATTCCAGATAATCTACACAAACCAAAGTAACCCTTCTCGGTTTCTTCTTCAATTCTGTAACGCTAGCTGGTTGACGGTTGACCCTTTTAACTATCACTTAAAAGTTAAAACTCAACAGTCAACAATGCCCAAATGTGTTGGAATTGGACTCGGGCTTCCTCATCGACTTCCATATTTGGCGGGTGTTTATTCTTGTTCTTCTTCTTATTCAATCACTAGTGCAGTTGGGTCTGTCCCTAATCTTGCAAAAGTAGTAAGCAAATGGAGCAGTGGAGGTAGAGCACCTCGGCGTCTGGTTTTGGGCCTTGGAGCTTCATTTTGGGCTCAGTTGATGAACATGTCTGGTGCTGTTGGCGGCAAGGCTTTCACTGCCTCTGCCAGGTTGAAGAGTGGTCCTTCCTTTGAAGAGATATTGAAGAATGTGGATTGGCCGGAGCAGATTCCTTACAAGCTGGAGGATTTCCAGCGCTATGATGAGTCACCAGATACATTGTTTTATGAGAGTCCGCGCTTTGTGACACATATTGATGATCCAGCCATTGCGGCACTGACTAAGTACTATTCTAAGGTGTTTCCGCCTAGCAACACTCCAGGAGTAAGCATGCTGGACATGTGTAGCAGTTGGGTTAGTCACTTTCCACCAGGATACAAGCAAGAGCGAGTAGTTGGAATGGGAATGAATGAAGCAGAGCTAAAGGCGAATCCGGTTTTGACAGAGTATGTTCTTCAAGACTTGAATGTCAACCCTAAACTTCCCTTTGAAGATAATTCTTTTGATGTGATAACTAATGTGGTTAGTGTTGATTATATAAACAAGCCTATTGAAGTATTCAAGGAAATGTGCCGGATTCTTAAGCCAGGGGGACTTGCTATAATTAGCTTTTCCAACCGATGTTTCTGGACTAAAGCAATCTCAATCTGGACATCAACTGGTGATGCTGATCATGGTTTGATTGTTGGGTCATATTTCCACTATGCTGGAGGATTTGAACCTCCTCAGGGGGTGGATATTTCTCCCAACCCTGGACGCTCAGACCCCATGTACATTGTATACTCTAGAAAGTTATCTTCCGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_11

Protein Analysis

365

Amino Acids

40.61

Weight (kDa)

8.1

Isoelectric Point (pI)

40.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_11 PF08241 237 - 299 7.3e-11 Methyltransferase domain
Methyltransf_25 PF13649 241 - 295 3.7e-06 Methyltransferase domain
Methyltransf_23 PF13489 253 - 320 8.1e-06 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 758
AccI GTMKAC 1 cut(s) 1071
AccII CGCG 1 cut(s) 529
AciI CCGC 5 cut(s) 200, 375, 527, 563, 596
AclWI GGATC 2 cut(s) 10, 545
AcoI YGGCCR 1 cut(s) 449
AcyI GRCGYC 1 cut(s) 310
AfaI GTAC 2 cut(s) 578, 1064
AfeI AGCGCT 1 cut(s) 488
AfiI CCNNNNNNNGG 3 cut(s) 399, 1019, 1043
AflII CTTAAG 1 cut(s) 872
AflIII ACRYGT 2 cut(s) 357, 630
AhlI ACTAGT 1 cut(s) 236
AjnI CCWGG 5 cut(s) 398, 610, 661, 877, 1042
AjuI GAANNNNNNNTTGG 2 cut(s) 899, 931
AluBI AGCT 5 cut(s) 87, 332, 472, 712, 900
AluI AGCT 5 cut(s) 87, 332, 472, 712, 900
Alw21I GWGCWC 1 cut(s) 304
AlwI GGATC 2 cut(s) 10, 545
Ama87I CYCGRG 1 cut(s) 170
Aor51HI AGCGCT 1 cut(s) 488
AoxI GGCC 2 cut(s) 322, 449
AspLEI GCGC 2 cut(s) 489, 531
AspS9I GGNCC 2 cut(s) 322, 413
AsuHPI GGTGA 2 cut(s) 492, 965
AsuNHI GCTAGC 1 cut(s) 83
AvaI CYCGRG 1 cut(s) 170
AvaII GGWCC 1 cut(s) 413
AxyI CCTNAGG 1 cut(s) 1017
BanII GRGCYC 1 cut(s) 346
Bbv12I GWGCWC 1 cut(s) 304
BciT130I CCWGG 5 cut(s) 400, 612, 663, 879, 1044
BciVI GTATCC 1 cut(s) 659
BclI TGATCA 1 cut(s) 961
BcuI ACTAGT 1 cut(s) 236
BfaI CTAG 4 cut(s) 84, 237, 600, 1077
BfoI RGCGCY 1 cut(s) 490
BfrI CTTAAG 1 cut(s) 872
BfuI GTATCC 1 cut(s) 659
BglI GCCNNNNNGGC 1 cut(s) 563
BisI GCNGC 2 cut(s) 376, 564
BlsI GCNGC 2 cut(s) 377, 565
BmcAI AGTACT 1 cut(s) 578
Bme1390I CCNGG 5 cut(s) 400, 612, 663, 879, 1044
Bme18I GGWCC 1 cut(s) 413
BmeT110I CYCGRG 1 cut(s) 170
BmgT120I GGNCC 2 cut(s) 322, 413
BmrFI CCNGG 5 cut(s) 400, 612, 663, 879, 1044
BmsI GCATC 1 cut(s) 946
BmtI GCTAGC 1 cut(s) 87
BpmI CTGGAG 3 cut(s) 494, 594, 1020
BsaBI GATNNNNATC 1 cut(s) 960
BsaHI GRCGYC 1 cut(s) 310
BsaJI CCNNGG 4 cut(s) 305, 325, 878, 1042
BsaWI WCCGGW 1 cut(s) 724
Bsc4I CCNNNNNNNGG 3 cut(s) 399, 1019, 1043
Bse1I ACTGG 1 cut(s) 955
Bse21I CCTNAGG 1 cut(s) 1017
Bse3DI GCAATG 1 cut(s) 558
Bse8I GATNNNNATC 1 cut(s) 960
BseBI CCWGG 5 cut(s) 400, 612, 663, 879, 1044
BseDI CCNNGG 4 cut(s) 305, 325, 878, 1042
BseJI GATNNNNATC 1 cut(s) 960
BseLI CCNNNNNNNGG 3 cut(s) 399, 1019, 1043
BseMI GCAATG 1 cut(s) 558
BseMII CTCAG 3 cut(s) 359, 1031, 1065
BseNI ACTGG 1 cut(s) 955
BseRI GAGGAG 1 cut(s) 1005
BsgI GTGCAG 1 cut(s) 261
Bsh1236I CGCG 1 cut(s) 529
BshFI GGCC 2 cut(s) 324, 451
BsiHKAI GWGCWC 1 cut(s) 304
BsiHKCI CYCGRG 1 cut(s) 170
BsiSI CCGG 3 cut(s) 452, 725, 865
BslFI GGGAC 2 cut(s) 239, 897
BslI CCNNNNNNNGG 3 cut(s) 399, 1019, 1043
BsmFI GGGAC 2 cut(s) 239, 897
BsnI GGCC 2 cut(s) 324, 451
BsoBI CYCGRG 1 cut(s) 170
Bsp1286I GDGCHC 2 cut(s) 304, 346
Bsp1407I TGTACA 1 cut(s) 1062
Bsp143I GATC 3 cut(s) 15, 550, 961
BspACI CCGC 5 cut(s) 200, 375, 527, 563, 596
BspANI GGCC 2 cut(s) 324, 451
BspCNI CTCAG 3 cut(s) 358, 1030, 1064
BspFNI CGCG 1 cut(s) 529
BspOI GCTAGC 1 cut(s) 87
BspPI GGATC 2 cut(s) 10, 545
BspTI CTTAAG 1 cut(s) 872
BsrDI GCAATG 1 cut(s) 558
BsrGI TGTACA 1 cut(s) 1062
BsrI ACTGG 1 cut(s) 955
BssECI CCNNGG 4 cut(s) 305, 325, 878, 1042
BssMI GATC 3 cut(s) 15, 550, 961
BssNAI GTATAC 1 cut(s) 1072
BssNI GRCGYC 1 cut(s) 310
BssT1I CCWWGG 1 cut(s) 325
Bst1107I GTATAC 1 cut(s) 1072
Bst2UI CCWGG 5 cut(s) 400, 612, 663, 879, 1044
Bst4CI ACNGT 2 cut(s) 97, 138
Bst6I CTCTTC 2 cut(s) 401, 420
BstACI GRCGYC 1 cut(s) 310
BstAFI CTTAAG 1 cut(s) 872
BstAUI TGTACA 1 cut(s) 1062
BstC8I GCNNGC 2 cut(s) 85, 623
BstDEI CTNAG 5 cut(s) 345, 573, 585, 1017, 1051
BstENI CCTNNNNNAGG 1 cut(s) 397
BstFNI CGCG 1 cut(s) 529
BstH2I RGCGCY 1 cut(s) 490
BstHHI GCGC 2 cut(s) 489, 531
BstKTI GATC 3 cut(s) 18, 553, 964
BstMBI GATC 3 cut(s) 15, 550, 961
BstMWI GCNNNNNNNGC 3 cut(s) 285, 389, 563
BstNI CCWGG 5 cut(s) 400, 612, 663, 879, 1044
BstNSI RCATGY 3 cut(s) 361, 625, 634
BstSCI CCNGG 5 cut(s) 398, 610, 661, 877, 1042
BstUI CGCG 1 cut(s) 529
BstXI CCANNNNNNTGG 1 cut(s) 998
BstZ17I GTATAC 1 cut(s) 1072
Bsu36I CCTNAGG 1 cut(s) 1017
BsuI GTATCC 1 cut(s) 659
BsuRI GGCC 2 cut(s) 324, 451
BtsI GCAGTG 2 cut(s) 295, 387
BtsIMutI CAGTG 3 cut(s) 295, 387, 566
Cac8I GCNNGC 2 cut(s) 85, 623
CfoI GCGC 2 cut(s) 489, 531
Cfr13I GGNCC 2 cut(s) 322, 413
CseI GACGC 2 cut(s) 299, 1056
Csp6I GTAC 2 cut(s) 577, 1063
CviAII CATG 5 cut(s) 358, 622, 631, 965, 1060
CviQI GTAC 2 cut(s) 577, 1063
DdeI CTNAG 5 cut(s) 345, 573, 585, 1017, 1051
DpnI GATC 3 cut(s) 17, 552, 963
DpnII GATC 3 cut(s) 15, 550, 961
DrdI GACNNNNNNGTC 1 cut(s) 758
DseDI GACNNNNNNGTC 1 cut(s) 758
EaeI YGGCCR 1 cut(s) 449
Eam1104I CTCTTC 2 cut(s) 401, 420
EarI CTCTTC 2 cut(s) 401, 420
EciI GGCGGA 1 cut(s) 585
Eco130I CCWWGG 1 cut(s) 325
Eco24I GRGCYC 1 cut(s) 346
Eco47I GGWCC 1 cut(s) 413
Eco47III AGCGCT 1 cut(s) 488
Eco81I CCTNAGG 1 cut(s) 1017
Eco88I CYCGRG 1 cut(s) 170
EcoNI CCTNNNNNAGG 1 cut(s) 397
EcoRII CCWGG 5 cut(s) 398, 610, 661, 877, 1042
EcoT14I CCWWGG 1 cut(s) 325
EcoT38I GRGCYC 1 cut(s) 346
ErhI CCWWGG 1 cut(s) 325
FaeI CATG 5 cut(s) 361, 625, 634, 968, 1063
FalI AAGNNNNNCTT 2 cut(s) 37, 69
FaqI GGGAC 2 cut(s) 239, 897
FatI CATG 5 cut(s) 357, 621, 630, 964, 1059
FauI CCCGC 1 cut(s) 193
FbaI TGATCA 1 cut(s) 961
FblI GTMKAC 1 cut(s) 1071
Fnu4HI GCNGC 2 cut(s) 376, 564
FriOI GRGCYC 1 cut(s) 346
Fsp4HI GCNGC 2 cut(s) 376, 564
FspBI CTAG 4 cut(s) 84, 237, 600, 1077
GlaI GCGC 2 cut(s) 488, 530
GluI GCNGC 2 cut(s) 376, 564
GsuI CTGGAG 3 cut(s) 494, 594, 1020
HaeII RGCGCY 1 cut(s) 490
HaeIII GGCC 2 cut(s) 324, 451
HapII CCGG 3 cut(s) 452, 725, 865
HgaI GACGC 2 cut(s) 299, 1056
HhaI GCGC 2 cut(s) 489, 531
Hin1I GRCGYC 1 cut(s) 310
Hin1II CATG 5 cut(s) 361, 625, 634, 968, 1063
Hin6I GCGC 2 cut(s) 487, 529
HinP1I GCGC 2 cut(s) 487, 529
HincII GTYRAC 4 cut(s) 93, 100, 141, 763
HindII GTYRAC 4 cut(s) 93, 100, 141, 763
HinfI GANTC 6 cut(s) 168, 460, 497, 523, 721, 868
HpaII CCGG 3 cut(s) 452, 725, 865
HphI GGTGA 2 cut(s) 492, 965
Hpy166II GTNNAC 5 cut(s) 93, 100, 141, 763, 1072
Hpy188I TCNGA 1 cut(s) 1054
Hpy188III TCNNGA 5 cut(s) 25, 749, 919, 940, 1077
Hpy8I GTNNAC 5 cut(s) 93, 100, 141, 763, 1072
HpyAV CCTTC 2 cut(s) 63, 426
HpyCH4III ACNGT 2 cut(s) 97, 138
HpyCH4V TGCA 2 cut(s) 242, 266
HpyF10VI GCNNNNNNNGC 3 cut(s) 285, 389, 563
HpyF3I CTNAG 5 cut(s) 345, 573, 585, 1017, 1051
Hsp92I GRCGYC 1 cut(s) 310
Hsp92II CATG 5 cut(s) 361, 625, 634, 968, 1063
HspAI GCGC 2 cut(s) 487, 529
Ksp22I TGATCA 1 cut(s) 961
Kzo9I GATC 3 cut(s) 15, 550, 961
LmnI GCTCC 3 cut(s) 285, 329, 454
LweI GCATC 1 cut(s) 946
MaeI CTAG 4 cut(s) 84, 237, 600, 1077
MaeIII GTNAC 5 cut(s) 47, 77, 498, 535, 650
MalI GATC 3 cut(s) 17, 552, 963
MboI GATC 3 cut(s) 15, 550, 961
MhlI GDGCHC 2 cut(s) 304, 346
MluCI AATT 5 cut(s) 20, 71, 162, 787, 894
MlyI GAGTC 3 cut(s) 162, 506, 532
MmeI TCCRAC 3 cut(s) 139, 667, 930
MnlI CCTC 8 cut(s) 189, 287, 315, 403, 469, 995, 1023, 1026
MseI TTAA 4 cut(s) 108, 119, 126, 873
MslI CAYNNNNRTG 1 cut(s) 546
MspCI CTTAAG 1 cut(s) 872
MspI CCGG 3 cut(s) 452, 725, 865
MspR9I CCNGG 5 cut(s) 400, 612, 663, 879, 1044
MvaI CCWGG 5 cut(s) 400, 612, 663, 879, 1044
MvnI CGCG 1 cut(s) 529
MwoI GCNNNNNNNGC 3 cut(s) 285, 389, 563
NdeII GATC 3 cut(s) 15, 550, 961
NheI GCTAGC 1 cut(s) 83
NlaIII CATG 5 cut(s) 361, 625, 634, 968, 1063
NmeAIII GCCGAG 1 cut(s) 286
NmuCI GTSAC 3 cut(s) 498, 535, 650
NspI RCATGY 3 cut(s) 361, 625, 634
PaeI GCATGC 1 cut(s) 625
PciI ACATGT 2 cut(s) 357, 630
PfeI GAWTC 3 cut(s) 460, 721, 868
PfoI TCCNGGA 1 cut(s) 610
PkrI GCNGC 2 cut(s) 377, 565
PleI GAGTC 3 cut(s) 162, 505, 531
PpsI GAGTC 3 cut(s) 162, 505, 531
PscI ACATGT 2 cut(s) 357, 630
Psp6I CCWGG 5 cut(s) 398, 610, 661, 877, 1042
PspGI CCWGG 5 cut(s) 398, 610, 661, 877, 1042
PspPI GGNCC 2 cut(s) 322, 413
RsaI GTAC 2 cut(s) 578, 1064
RsaNI GTAC 2 cut(s) 577, 1063
RseI CAYNNNNRTG 1 cut(s) 546
SaqAI TTAA 4 cut(s) 108, 119, 126, 873
SatI GCNGC 2 cut(s) 376, 564
Sau3AI GATC 3 cut(s) 15, 550, 961
Sau96I GGNCC 2 cut(s) 322, 413
ScaI AGTACT 1 cut(s) 578
SchI GAGTC 3 cut(s) 162, 506, 532
ScrFI CCNGG 5 cut(s) 400, 612, 663, 879, 1044
SduI GDGCHC 2 cut(s) 304, 346
SfaNI GCATC 1 cut(s) 946
SinI GGWCC 1 cut(s) 413
SmiMI CAYNNNNRTG 1 cut(s) 546
SmlI CTYRAG 1 cut(s) 872
SmoI CTYRAG 1 cut(s) 872
SpeI ACTAGT 1 cut(s) 236
SphI GCATGC 1 cut(s) 625
Sse9I AATT 5 cut(s) 20, 71, 162, 787, 894
SsiI CCGC 5 cut(s) 200, 375, 527, 563, 596
SspMI CTAG 4 cut(s) 84, 237, 600, 1077
StyD4I CCNGG 5 cut(s) 398, 610, 661, 877, 1042
StyI CCWWGG 1 cut(s) 325
TaaI ACNGT 2 cut(s) 97, 138
TaqI TCGA 1 cut(s) 184
TasI AATT 5 cut(s) 20, 71, 162, 787, 894
TatI WGTACW 2 cut(s) 576, 1062
TauI GCSGC 2 cut(s) 378, 566
TfiI GAWTC 3 cut(s) 460, 721, 868
Tru1I TTAA 4 cut(s) 108, 119, 126, 873
Tru9I TTAA 4 cut(s) 108, 119, 126, 873
TscAI CASTG 3 cut(s) 295, 394, 573
TseFI GTSAC 3 cut(s) 498, 535, 650
Tsp45I GTSAC 3 cut(s) 498, 535, 650
TspDTI ATGAA 4 cut(s) 324, 368, 713, 717
TspGWI ACGGA 1 cut(s) 1081
TspRI CASTG 3 cut(s) 295, 394, 573
Vha464I CTTAAG 1 cut(s) 872
VpaK11BI GGWCC 1 cut(s) 413
XagI CCTNNNNNAGG 1 cut(s) 397
XbaI TCTAGA 1 cut(s) 1076
XceI RCATGY 3 cut(s) 361, 625, 634
XmiI GTMKAC 1 cut(s) 1071
XspI CTAG 4 cut(s) 84, 237, 600, 1077
ZrmI AGTACT 1 cut(s) 578
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.