AT4G29810
ERF Family

belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0006526
Physical Location & Seq
Reverse (-)
14592963 .. 14595384
2422 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G29810.3

Sequence Viewer

Length: 1092 bp
ATGAAGAAAGGTGGATTCAGCAATAATCTCAAGCTCGCAATTCCTGTTGCTGGCGAGCAATCCATCACCAAATTCCTGACTCAAAGCGGTACGTTTAAGGATGGAGATCTACGTGTTAACAAGGATGGAGTTCGAATCATTTCTCAATTGGAGCCTGAAGTCCTGTCTCCAATTAAGCCAGCTGATGATCAGCTGAGCTTGTCGGATTTGGATATGGTTAAAGTCATTGGCAAAGGAAGTAGTGGTGTTGTTCAGCTGGTTCAACACAAATGGACTGGCCAATTTTTCGCCTTGAAGGTCATTCAACTAAATATTGATGAAGCAATTCGCAAGGCAATTGCACAAGAGCTCAAAATAAATCAATCGTCACAGTGTCCAAATCTTGTTACCTCGTACCAGTCATTTTATGACAATGGCGCAATCTCACTAATCTTGGAGTACATGGACGGAGGATCTCTAGCAGACTTTCTCAAGTCAGTTAAAGCCATCCCTGACTCCTATCTTTCTGCCATCTTTAGACAAGTGCTTCAAGGATTAATCTATCTTCATCACGATAGGCATATCATCCATCGTGACTTGAAACCATCCAATCTGTTGATCAACCACAGAGGAGAAGTCAAAATAACTGACTTTGGTGTGAGTACCGTTATGACAAACACCGCAGGTTTAGCAAACACATTTGTGGGGACTTACAATTATATGTCTCCAGAGAGAATCGTTGGAAACAAGTACGGAAATAAAAGTGATATATGGAGCTTGGGTTTAGTAGTACTCGAATGTGCAACAGGAAAGTTCCCTTATGCACCTCCGAATCAAGAGGAAACATGGACCAGTGTTTTCGAGTTGATGGAAGCCATTGTTGACCAACCGCCACCCGCTCTTCCTTCAGGAAATTTCTCCCCTGAGTTATCTTCATTCATCTCCACATGTTTGCAGAAGGATCCAAACAGTCGAAGCTCTGCAAAGGAACTGATGGAACATCCTTTCTTGAACAAATACGACTACTCGGGGATCAATCTCGCGTCCTACTTCACAGATGCAGGATCGCCACTTGCAACACTTGGGAACCTGTCTGGTACGTTCTCCGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000165 GO:0000187 GO:0001932 GO:0001934 GO:0002376 GO:0003002 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004708 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0007346 GO:0007389 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009605 GO:0009607 GO:0009628 GO:0009631 GO:0009651 GO:0009814 GO:0009893 GO:0009914 GO:0009966 GO:0009967 GO:0009987 GO:0010051 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0010817 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0031098 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043207 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045087 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051704 GO:0051707 GO:0051716 GO:0051726 GO:0060255 GO:0060918 GO:0065007 GO:0065008 GO:0065009 GO:0071704 GO:0071900 GO:0071902 GO:0071944 GO:0080090 GO:0098542 GO:0140096 GO:1901564 GO:1902531 GO:1902533
KEGG Pathways
Metabolic & Signaling
ko04016 map04016
Pfam Domains
Protein Families
Pkinase

Protein Analysis

363

Amino Acids

39.85

Weight (kDa)

6.0

Isoelectric Point (pI)

41.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 80 - 334 3.7e-39 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 82 - 334 5.9e-70 Protein kinase domain
ABC1 PF03109 152 - 228 1.4e-06 ABC1 atypical kinase-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 653
AccBSI CCGCTC 1 cut(s) 878
AccII CGCG 1 cut(s) 1022
AciI CCGC 4 cut(s) 87, 660, 869, 876
AclWI GGATC 5 cut(s) 460, 935, 948, 1019, 1051
AcoI YGGCCR 1 cut(s) 277
AcsI RAATTY 2 cut(s) 71, 892
AcuI CTGAAG 2 cut(s) 177, 870
AfaI GTAC 7 cut(s) 91, 395, 440, 643, 731, 771, 1078
AfiI CCNNNNNNNGG 1 cut(s) 50
AflIII ACRYGT 2 cut(s) 112, 926
AgsI TTSAA 6 cut(s) 263, 295, 305, 530, 580, 991
AleI CACNNNNGTG 1 cut(s) 680
AluBI AGCT 8 cut(s) 34, 182, 193, 198, 256, 349, 756, 957
AluI AGCT 8 cut(s) 34, 182, 193, 198, 256, 349, 756, 957
Alw21I GWGCWC 1 cut(s) 351
Alw26I GTCTC 2 cut(s) 171, 708
AlwI GGATC 5 cut(s) 460, 935, 948, 1019, 1051
Ama87I CYCGRG 1 cut(s) 1006
AoxI GGCC 1 cut(s) 277
ApoI RAATTY 2 cut(s) 71, 892
AseI ATTAAT 1 cut(s) 536
Asp700I GAANNNNTTC 2 cut(s) 139, 324
AspLEI GCGC 1 cut(s) 419
AspS9I GGNCC 1 cut(s) 828
AsuHPI GGTGA 1 cut(s) 58
AsuII TTCGAA 1 cut(s) 133
AvaI CYCGRG 1 cut(s) 1006
AvaII GGWCC 1 cut(s) 828
BalI TGGCCA 1 cut(s) 279
BamHI GGATCC 1 cut(s) 940
BanII GRGCYC 1 cut(s) 351
Bbv12I GWGCWC 1 cut(s) 351
BccI CCATC 9 cut(s) 71, 95, 119, 494, 518, 576, 592, 841, 967
BclI TGATCA 2 cut(s) 187, 597
BcoDI GTCTC 2 cut(s) 171, 708
BfaI CTAG 1 cut(s) 458
BfuAI ACCTGC 1 cut(s) 653
BglII AGATCT 1 cut(s) 106
BlpI GCTNAGC 1 cut(s) 194
BmcAI AGTACT 1 cut(s) 771
Bme18I GGWCC 1 cut(s) 828
BmeT110I CYCGRG 1 cut(s) 1006
BmgT120I GGNCC 1 cut(s) 828
BmiI GGNNCC 3 cut(s) 153, 942, 1067
BmsI GCATC 1 cut(s) 1027
BpmI CTGGAG 1 cut(s) 690
Bpu1102I GCTNAGC 1 cut(s) 194
Bpu14I TTCGAA 1 cut(s) 133
BpuEI CTTGAG 2 cut(s) 14, 455
BsaAI YACGTR 1 cut(s) 113
BsaBI GATNNNNATC 1 cut(s) 105
BsaXI ACNNNNNCTCC 2 cut(s) 745, 775
Bsc4I CCNNNNNNNGG 1 cut(s) 50
Bse1I ACTGG 3 cut(s) 280, 397, 831
Bse8I GATNNNNATC 1 cut(s) 105
BseGI GGATG 6 cut(s) 106, 130, 486, 564, 584, 979
BseJI GATNNNNATC 1 cut(s) 105
BseLI CCNNNNNNNGG 1 cut(s) 50
BseMII CTCAG 2 cut(s) 185, 894
BseNI ACTGG 3 cut(s) 280, 397, 831
BseRI GAGGAG 1 cut(s) 624
Bsh1236I CGCG 1 cut(s) 1022
BshFI GGCC 1 cut(s) 279
BsiHKAI GWGCWC 1 cut(s) 351
BsiHKCI CYCGRG 1 cut(s) 1006
BslFI GGGAC 1 cut(s) 700
BslI CCNNNNNNNGG 1 cut(s) 50
BsmAI GTCTC 2 cut(s) 171, 708
BsmFI GGGAC 1 cut(s) 700
BsnI GGCC 1 cut(s) 279
BsoBI CYCGRG 1 cut(s) 1006
Bsp119I TTCGAA 1 cut(s) 133
Bsp1286I GDGCHC 1 cut(s) 351
Bsp143I GATC 7 cut(s) 106, 187, 452, 597, 940, 1011, 1043
Bsp1720I GCTNAGC 1 cut(s) 194
BspACI CCGC 4 cut(s) 87, 660, 869, 876
BspANI GGCC 1 cut(s) 279
BspCNI CTCAG 2 cut(s) 186, 895
BspFNI CGCG 1 cut(s) 1022
BspLI GGNNCC 3 cut(s) 153, 942, 1067
BspMI ACCTGC 1 cut(s) 653
BspPI GGATC 5 cut(s) 460, 935, 948, 1019, 1051
BspQI GCTCTTC 1 cut(s) 885
BspT104I TTCGAA 1 cut(s) 133
BsrBI CCGCTC 1 cut(s) 878
BsrI ACTGG 3 cut(s) 280, 397, 831
BssMI GATC 7 cut(s) 106, 187, 452, 597, 940, 1011, 1043
Bst4CI ACNGT 3 cut(s) 372, 646, 950
Bst6I CTCTTC 1 cut(s) 885
BstBAI YACGTR 1 cut(s) 113
BstBI TTCGAA 1 cut(s) 133
BstC8I GCNNGC 4 cut(s) 36, 52, 56, 180
BstDEI CTNAG 2 cut(s) 194, 903
BstF5I GGATG 6 cut(s) 106, 130, 486, 564, 584, 979
BstFNI CGCG 1 cut(s) 1022
BstHHI GCGC 1 cut(s) 419
BstKTI GATC 7 cut(s) 109, 190, 455, 600, 943, 1014, 1046
BstMAI GTCTC 2 cut(s) 171, 708
BstMBI GATC 7 cut(s) 106, 187, 452, 597, 940, 1011, 1043
BstMWI GCNNNNNNNGC 1 cut(s) 668
BstNSI RCATGY 1 cut(s) 930
BstUI CGCG 1 cut(s) 1022
BstX2I RGATCY 3 cut(s) 106, 452, 940
BstYI RGATCY 3 cut(s) 106, 452, 940
BsuRI GGCC 1 cut(s) 279
BtsCI GGATG 6 cut(s) 106, 130, 486, 564, 584, 979
BtsIMutI CAGTG 2 cut(s) 377, 838
BveI ACCTGC 1 cut(s) 653
Cac8I GCNNGC 4 cut(s) 36, 52, 56, 180
CfoI GCGC 1 cut(s) 419
Cfr13I GGNCC 1 cut(s) 828
CseI GACGC 1 cut(s) 1011
Csp6I GTAC 7 cut(s) 90, 394, 439, 642, 730, 770, 1077
CviAII CATG 3 cut(s) 442, 825, 927
CviQI GTAC 7 cut(s) 90, 394, 439, 642, 730, 770, 1077
DdeI CTNAG 2 cut(s) 194, 903
DpnI GATC 7 cut(s) 108, 189, 454, 599, 942, 1013, 1045
DpnII GATC 7 cut(s) 106, 187, 452, 597, 940, 1011, 1043
EaeI YGGCCR 1 cut(s) 277
Eam1104I CTCTTC 1 cut(s) 885
EarI CTCTTC 1 cut(s) 885
Ecl136II GAGCTC 1 cut(s) 349
Eco24I GRGCYC 1 cut(s) 351
Eco47I GGWCC 1 cut(s) 828
Eco53kI GAGCTC 1 cut(s) 349
Eco57I CTGAAG 2 cut(s) 177, 870
Eco88I CYCGRG 1 cut(s) 1006
EcoICRI GAGCTC 1 cut(s) 349
EcoT38I GRGCYC 1 cut(s) 351
FaeI CATG 3 cut(s) 445, 828, 930
FaqI GGGAC 1 cut(s) 700
FatI CATG 3 cut(s) 441, 824, 926
FauI CCCGC 1 cut(s) 883
FbaI TGATCA 2 cut(s) 187, 597
FokI GGATG 6 cut(s) 113, 137, 473, 551, 571, 966
FriOI GRGCYC 1 cut(s) 351
FspBI CTAG 1 cut(s) 458
GlaI GCGC 1 cut(s) 418
GsuI CTGGAG 1 cut(s) 690
HaeIII GGCC 1 cut(s) 279
HgaI GACGC 1 cut(s) 1011
HhaI GCGC 1 cut(s) 419
Hin1II CATG 3 cut(s) 445, 828, 930
Hin6I GCGC 1 cut(s) 417
HinP1I GCGC 1 cut(s) 417
HincII GTYRAC 2 cut(s) 118, 862
HindII GTYRAC 2 cut(s) 118, 862
HinfI GANTC 6 cut(s) 15, 79, 135, 494, 714, 811
HpaI GTTAAC 1 cut(s) 118
HphI GGTGA 1 cut(s) 58
Hpy166II GTNNAC 2 cut(s) 118, 862
Hpy188I TCNGA 2 cut(s) 205, 810
Hpy188III TCNNGA 7 cut(s) 76, 551, 572, 707, 815, 888, 988
Hpy8I GTNNAC 2 cut(s) 118, 862
HpyAV CCTTC 3 cut(s) 289, 894, 931
HpyCH4III ACNGT 3 cut(s) 372, 646, 950
HpyCH4IV ACGT 3 cut(s) 92, 112, 1079
HpyCH4V TGCA 7 cut(s) 341, 782, 803, 934, 962, 1040, 1055
HpyF10VI GCNNNNNNNGC 1 cut(s) 668
HpyF3I CTNAG 2 cut(s) 194, 903
HpySE526I ACGT 3 cut(s) 92, 112, 1079
Hsp92II CATG 3 cut(s) 445, 828, 930
HspAI GCGC 1 cut(s) 417
Ksp22I TGATCA 2 cut(s) 187, 597
KspAI GTTAAC 1 cut(s) 118
Kzo9I GATC 7 cut(s) 106, 187, 452, 597, 940, 1011, 1043
LguI GCTCTTC 1 cut(s) 885
LmnI GCTCC 2 cut(s) 151, 753
LweI GCATC 1 cut(s) 1027
MaeI CTAG 1 cut(s) 458
MaeII ACGT 3 cut(s) 92, 112, 1079
MaeIII GTNAC 3 cut(s) 366, 385, 572
MalI GATC 7 cut(s) 108, 189, 454, 599, 942, 1013, 1045
MbiI CCGCTC 1 cut(s) 878
MboI GATC 7 cut(s) 106, 187, 452, 597, 940, 1011, 1043
MboII GAAGA 4 cut(s) 16, 536, 872, 903
MfeI CAATTG 2 cut(s) 146, 336
MflI RGATCY 3 cut(s) 106, 452, 940
MhlI GDGCHC 1 cut(s) 351
MlsI TGGCCA 1 cut(s) 279
MluCI AATT 9 cut(s) 39, 71, 146, 171, 281, 324, 336, 694, 892
MluNI TGGCCA 1 cut(s) 279
MlyI GAGTC 2 cut(s) 73, 488
MmeI TCCRAC 2 cut(s) 183, 700
MnlI CCTC 5 cut(s) 400, 443, 602, 811, 816
Mox20I TGGCCA 1 cut(s) 279
MroXI GAANNNNTTC 2 cut(s) 139, 324
MscI TGGCCA 1 cut(s) 279
MseI TTAA 6 cut(s) 96, 117, 174, 219, 480, 536
MslI CAYNNNNRTG 1 cut(s) 680
Msp20I TGGCCA 1 cut(s) 279
MspA1I CMGCKG 3 cut(s) 182, 193, 256
MunI CAATTG 2 cut(s) 146, 336
MvnI CGCG 1 cut(s) 1022
MwoI GCNNNNNNNGC 1 cut(s) 668
NdeII GATC 7 cut(s) 106, 187, 452, 597, 940, 1011, 1043
NlaIII CATG 3 cut(s) 445, 828, 930
NlaIV GGNNCC 3 cut(s) 153, 942, 1067
NmuCI GTSAC 2 cut(s) 366, 572
NspI RCATGY 1 cut(s) 930
NspV TTCGAA 1 cut(s) 133
OliI CACNNNNGTG 1 cut(s) 680
PciI ACATGT 1 cut(s) 926
PciSI GCTCTTC 1 cut(s) 885
PdmI GAANNNNTTC 2 cut(s) 139, 324
PfeI GAWTC 4 cut(s) 15, 135, 714, 811
PleI GAGTC 2 cut(s) 73, 488
PpsI GAGTC 2 cut(s) 73, 488
Ppu21I YACGTR 1 cut(s) 113
PscI ACATGT 1 cut(s) 926
PshBI ATTAAT 1 cut(s) 536
Psp124BI GAGCTC 1 cut(s) 351
PspN4I GGNNCC 3 cut(s) 153, 942, 1067
PspPI GGNCC 1 cut(s) 828
PsuI RGATCY 3 cut(s) 106, 452, 940
PvuII CAGCTG 3 cut(s) 182, 193, 256
RsaI GTAC 7 cut(s) 91, 395, 440, 643, 731, 771, 1078
RsaNI GTAC 7 cut(s) 90, 394, 439, 642, 730, 770, 1077
RseI CAYNNNNRTG 1 cut(s) 680
SacI GAGCTC 1 cut(s) 351
SapI GCTCTTC 1 cut(s) 885
SaqAI TTAA 6 cut(s) 96, 117, 174, 219, 480, 536
Sau3AI GATC 7 cut(s) 106, 187, 452, 597, 940, 1011, 1043
Sau96I GGNCC 1 cut(s) 828
ScaI AGTACT 1 cut(s) 771
SchI GAGTC 2 cut(s) 73, 488
SduI GDGCHC 1 cut(s) 351
SfaNI GCATC 1 cut(s) 1027
SfuI TTCGAA 1 cut(s) 133
SinI GGWCC 1 cut(s) 828
SmiMI CAYNNNNRTG 1 cut(s) 680
SmlI CTYRAG 2 cut(s) 29, 470
SmoI CTYRAG 2 cut(s) 29, 470
Sse9I AATT 9 cut(s) 39, 71, 146, 171, 281, 324, 336, 694, 892
SsiI CCGC 4 cut(s) 87, 660, 869, 876
SspI AATATT 1 cut(s) 313
SspMI CTAG 1 cut(s) 458
SstI GAGCTC 1 cut(s) 351
TaaI ACNGT 3 cut(s) 372, 646, 950
TaiI ACGT 3 cut(s) 95, 115, 1082
TaqI TCGA 4 cut(s) 133, 774, 840, 952
TasI AATT 9 cut(s) 39, 71, 146, 171, 281, 324, 336, 694, 892
TatI WGTACW 2 cut(s) 438, 769
TfiI GAWTC 4 cut(s) 15, 135, 714, 811
Tru1I TTAA 6 cut(s) 96, 117, 174, 219, 480, 536
Tru9I TTAA 6 cut(s) 96, 117, 174, 219, 480, 536
TscAI CASTG 2 cut(s) 377, 838
TseFI GTSAC 2 cut(s) 366, 572
Tsp45I GTSAC 2 cut(s) 366, 572
TspDTI ATGAA 5 cut(s) 17, 333, 536, 903, 907
TspGWI ACGGA 3 cut(s) 462, 747, 1075
TspRI CASTG 2 cut(s) 377, 838
VpaK11BI GGWCC 1 cut(s) 828
VspI ATTAAT 1 cut(s) 536
XapI RAATTY 2 cut(s) 71, 892
XceI RCATGY 1 cut(s) 930
XmnI GAANNNNTTC 2 cut(s) 139, 324
XspI CTAG 1 cut(s) 458
ZrmI AGTACT 1 cut(s) 771
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.