Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000469.1

Orthogroup ID

OG0006526

Physical Location & Seq

Genomic Coordinates Reverse (-)

22463 .. 24635

Gene Structure 2173 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000469.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

atgattttagcagatctctacgtggttaaagtcattggtaaaggaaatggtggggttgtgcaattggttcagcacaaatggactggccagttttttgcattgaaggtaatccaaatgaatattcaggagtctattcgcaagcagattgcacaagaattgaaaattaatcaatcaaaacaatgtccctatattgttgcatgttaccagtccttctatgataatggttacgtttcaagtatcctagagtacatggatggtggatctttagcagatcttctgagaaaagtcagatcaattccagagccatatatttctgctatgtgtaagcaggtgctgcgcggtttgttgtatcttcatcatgaaaaacacataattcacagggacttcaaaccctcgaacttgttaataaatcatagaggagaaattaagataaaaggatgggaaaacttttttgagcttatgagtgctgttgttgacttgccaccaccttctgcaccttccgatcagttttctccagagttctgctcatttatttctgcatgcaggatctccacttgcaaccttttaaacctatctgggaataattggatcatgataggagtcatctgctctcttgctgcttattccaggatggggactgcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0000187 GO:0001932 GO:0001934 GO:0002376 GO:0003002 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004708 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0007346 GO:0007389 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009605 GO:0009607 GO:0009628 GO:0009631 GO:0009651 GO:0009814 GO:0009893 GO:0009914 GO:0009966 GO:0009967 GO:0009987 GO:0010051 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0010817 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0031098 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043207 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045087 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051704 GO:0051707 GO:0051716 GO:0051726 GO:0060255 GO:0060918 GO:0065007 GO:0065008 GO:0065009 GO:0071704 GO:0071900 GO:0071902 GO:0071944 GO:0080090 GO:0098542 GO:0140096 GO:1901564 GO:1902531 GO:1902533

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Pkinase

Protein Analysis

214

Amino Acids

24.13

Weight (kDa)

8.8

Isoelectric Point (pI)

42.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006526)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26070 AT4G26070 AT4G26070 AT4G26070 AT4G26070 AT4G29810 AT4G29810 AT4G29810
fragaria_vesca	FvH4_1g08020 FvH4_1g08020 FvH4_1g08020 FvH4_1g08020
malus_domestica	MD02G1084700.v1.1 MD15G1212100.v1.1
prunus_persica	Prupe.7G204700_v2.0.a1 Prupe.7G204700_v2.0.a1 Prupe.7G204700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0094061
rosa_laevigata	RLG00000016450
rosa_multiflora	Rmu_ssc0000469.1_g000003
rosa_roxburghii	Rroxscaffold_2G00147510
rosa_rugosa	Rorug02G0040700
rosa_samantha	Rh2AG088200 Rh2BG088400 Rh2CG090700 Rh2DG087400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	319
Acc36I	ACCTGC	1 cut(s)	319
AccII	CGCG	1 cut(s)	339
AciI	CCGC	1 cut(s)	339
AclWI	GGATC	3 cut(s)	268, 554, 596
AcoI	YGGCCR	1 cut(s)	85
AfaI	GTAC	1 cut(s)	248
AfiI	CCNNNNNNNGG	1 cut(s)	633
AgsI	TTSAA	4 cut(s)	103, 160, 234, 388
AjnI	CCWGG	1 cut(s)	626
AjuI	GAANNNNNNNTTGG	2 cut(s)	105, 137
AluBI	AGCT	1 cut(s)	457
AluI	AGCT	1 cut(s)	457
AlwI	GGATC	3 cut(s)	268, 554, 596
AlwNI	CAGNNNCTG	1 cut(s)	334
AoxI	GGCC	1 cut(s)	85
ApeKI	GCWGC	2 cut(s)	334, 617
AseI	ATTAAT	1 cut(s)	165
AspLEI	GCGC	1 cut(s)	339
BalI	TGGCCA	1 cut(s)	87
BbvI	GCAGC	2 cut(s)	321, 604
BccI	CCATC	3 cut(s)	248, 432, 625
BciT130I	CCWGG	1 cut(s)	628
BciVI	GTATCC	1 cut(s)	248
BfaI	CTAG	2 cut(s)	242, 643
BfuAI	ACCTGC	1 cut(s)	319
BfuI	GTATCC	1 cut(s)	248
BglII	AGATCT	2 cut(s)	13, 271
BisI	GCNGC	2 cut(s)	335, 618
BlsI	GCNGC	2 cut(s)	336, 619
Bme1390I	CCNGG	1 cut(s)	628
BmrFI	CCNGG	1 cut(s)	628
BplI	GAGNNNNNCTC	2 cut(s)	509, 541
BpmI	CTGGAG	1 cut(s)	498
BsaAI	YACGTR	1 cut(s)	22
Bsc4I	CCNNNNNNNGG	1 cut(s)	633
Bse1I	ACTGG	3 cut(s)	88, 88, 205
BseBI	CCWGG	1 cut(s)	628
BseGI	GGATG	3 cut(s)	259, 443, 636
BseLI	CCNNNNNNNGG	1 cut(s)	633
BseMII	CTCAG	1 cut(s)	269
BseNI	ACTGG	3 cut(s)	88, 88, 205
BseRI	GAGGAG	1 cut(s)	432
BseXI	GCAGC	2 cut(s)	321, 604
BsgI	GTGCAG	1 cut(s)	477
Bsh1236I	CGCG	1 cut(s)	339
BshFI	GGCC	1 cut(s)	87
BslFI	GGGAC	2 cut(s)	168, 395
BslI	CCNNNNNNNGG	1 cut(s)	633
BsmFI	GGGAC	2 cut(s)	168, 395
BsnI	GGCC	1 cut(s)	87
Bsp143I	GATC	7 cut(s)	13, 260, 271, 290, 502, 546, 588
BspACI	CCGC	1 cut(s)	339
BspANI	GGCC	1 cut(s)	87
BspCNI	CTCAG	1 cut(s)	270
BspFNI	CGCG	1 cut(s)	339
BspHI	TCATGA	2 cut(s)	358, 591
BspMI	ACCTGC	1 cut(s)	319
BspPI	GGATC	3 cut(s)	268, 554, 596
BsrI	ACTGG	3 cut(s)	88, 88, 205
BssMI	GATC	7 cut(s)	13, 260, 271, 290, 502, 546, 588
Bst2UI	CCWGG	1 cut(s)	628
BstAPI	GCANNNNNTGC	1 cut(s)	334
BstBAI	YACGTR	1 cut(s)	22
BstC8I	GCNNGC	2 cut(s)	140, 541
BstDEI	CTNAG	1 cut(s)	278
BstF5I	GGATG	3 cut(s)	259, 443, 636
BstFNI	CGCG	1 cut(s)	339
BstHHI	GCGC	1 cut(s)	339
BstKTI	GATC	7 cut(s)	16, 263, 274, 293, 505, 549, 591
BstMBI	GATC	7 cut(s)	13, 260, 271, 290, 502, 546, 588
BstMWI	GCNNNNNNNGC	1 cut(s)	334
BstNI	CCWGG	1 cut(s)	628
BstNSI	RCATGY	2 cut(s)	201, 543
BstSCI	CCNGG	1 cut(s)	626
BstUI	CGCG	1 cut(s)	339
BstV1I	GCAGC	2 cut(s)	321, 604
BstX2I	RGATCY	4 cut(s)	13, 260, 271, 546
BstYI	RGATCY	4 cut(s)	13, 260, 271, 546
BsuI	GTATCC	1 cut(s)	248
BsuRI	GGCC	1 cut(s)	87
BtsCI	GGATG	3 cut(s)	259, 443, 636
BveI	ACCTGC	1 cut(s)	319
Cac8I	GCNNGC	2 cut(s)	140, 541
CaiI	CAGNNNCTG	1 cut(s)	334
CciI	TCATGA	2 cut(s)	358, 591
CfoI	GCGC	1 cut(s)	339
Csp6I	GTAC	1 cut(s)	247
CviAII	CATG	5 cut(s)	198, 250, 359, 540, 592
CviJI	RGCY	3 cut(s)	87, 304, 457
CviKI_1	RGCY	3 cut(s)	87, 304, 457
CviQI	GTAC	1 cut(s)	247
DdeI	CTNAG	1 cut(s)	278
DpnI	GATC	7 cut(s)	15, 262, 273, 292, 504, 548, 590
DpnII	GATC	7 cut(s)	13, 260, 271, 290, 502, 546, 588
DraI	TTTAAA	1 cut(s)	567
EaeI	YGGCCR	1 cut(s)	85
EcoRII	CCWGG	1 cut(s)	626
FaeI	CATG	5 cut(s)	201, 253, 362, 543, 595
FaqI	GGGAC	2 cut(s)	168, 395
FatI	CATG	5 cut(s)	197, 249, 358, 539, 591
Fnu4HI	GCNGC	2 cut(s)	335, 618
FokI	GGATG	2 cut(s)	266, 450
Fsp4HI	GCNGC	2 cut(s)	335, 618
FspBI	CTAG	2 cut(s)	242, 643
GlaI	GCGC	1 cut(s)	338
GluI	GCNGC	2 cut(s)	335, 618
GsuI	CTGGAG	1 cut(s)	498
HaeIII	GGCC	1 cut(s)	87
HhaI	GCGC	1 cut(s)	339
Hin1II	CATG	5 cut(s)	201, 253, 362, 543, 595
Hin6I	GCGC	1 cut(s)	337
HinP1I	GCGC	1 cut(s)	337
HincII	GTYRAC	1 cut(s)	475
HindII	GTYRAC	1 cut(s)	475
HinfI	GANTC	2 cut(s)	128, 600
Hpy166II	GTNNAC	1 cut(s)	475
Hpy188I	TCNGA	3 cut(s)	279, 290, 502
Hpy188III	TCNNGA	5 cut(s)	125, 299, 359, 515, 592
Hpy8I	GTNNAC	1 cut(s)	475
HpyAV	CCTTC	4 cut(s)	97, 220, 498, 507
HpyCH4IV	ACGT	2 cut(s)	21, 228
HpyCH4V	TGCA	8 cut(s)	61, 98, 149, 197, 494, 539, 543, 558
HpyF10VI	GCNNNNNNNGC	1 cut(s)	334
HpyF3I	CTNAG	1 cut(s)	278
HpySE526I	ACGT	2 cut(s)	21, 228
Hsp92II	CATG	5 cut(s)	201, 253, 362, 543, 595
HspAI	GCGC	1 cut(s)	337
Kzo9I	GATC	7 cut(s)	13, 260, 271, 290, 502, 546, 588
Lsp1109I	GCAGC	2 cut(s)	321, 604
MaeI	CTAG	2 cut(s)	242, 643
MaeII	ACGT	2 cut(s)	21, 228
MaeIII	GTNAC	2 cut(s)	200, 224
MalI	GATC	7 cut(s)	15, 262, 273, 292, 504, 548, 590
MboI	GATC	7 cut(s)	13, 260, 271, 290, 502, 546, 588
MboII	GAAGA	2 cut(s)	266, 344
MfeI	CAATTG	1 cut(s)	62
MflI	RGATCY	4 cut(s)	13, 260, 271, 546
MlsI	TGGCCA	1 cut(s)	87
MluCI	AATT	7 cut(s)	62, 155, 162, 294, 372, 423, 583
MluNI	TGGCCA	1 cut(s)	87
MlyI	GAGTC	2 cut(s)	137, 609
MnlI	CCTC	2 cut(s)	403, 410
Mox20I	TGGCCA	1 cut(s)	87
MscI	TGGCCA	1 cut(s)	87
MseI	TTAA	5 cut(s)	27, 165, 404, 426, 566
Msp20I	TGGCCA	1 cut(s)	87
MspR9I	CCNGG	1 cut(s)	628
MunI	CAATTG	1 cut(s)	62
MvaI	CCWGG	1 cut(s)	628
MvnI	CGCG	1 cut(s)	339
MwoI	GCNNNNNNNGC	1 cut(s)	334
NdeII	GATC	7 cut(s)	13, 260, 271, 290, 502, 546, 588
NlaIII	CATG	5 cut(s)	201, 253, 362, 543, 595
NspI	RCATGY	2 cut(s)	201, 543
PaeI	GCATGC	1 cut(s)	543
PagI	TCATGA	2 cut(s)	358, 591
PaqCI	CACCTGC	1 cut(s)	319
PfoI	TCCNGGA	1 cut(s)	626
PkrI	GCNGC	2 cut(s)	336, 619
PleI	GAGTC	2 cut(s)	136, 608
PpsI	GAGTC	2 cut(s)	136, 608
Ppu21I	YACGTR	1 cut(s)	22
PshBI	ATTAAT	1 cut(s)	165
Psp6I	CCWGG	1 cut(s)	626
PspGI	CCWGG	1 cut(s)	626
PstNI	CAGNNNCTG	1 cut(s)	334
PsuI	RGATCY	4 cut(s)	13, 260, 271, 546
RsaI	GTAC	1 cut(s)	248
RsaNI	GTAC	1 cut(s)	247
SaqAI	TTAA	5 cut(s)	27, 165, 404, 426, 566
SatI	GCNGC	2 cut(s)	335, 618
Sau3AI	GATC	7 cut(s)	13, 260, 271, 290, 502, 546, 588
SchI	GAGTC	2 cut(s)	137, 609
ScrFI	CCNGG	1 cut(s)	628
SetI	ASST	9 cut(s)	24, 108, 231, 333, 459, 490, 499, 564, 573
SphI	GCATGC	1 cut(s)	543
Sse9I	AATT	7 cut(s)	62, 155, 162, 294, 372, 423, 583
SsiI	CCGC	1 cut(s)	339
SspI	AATATT	1 cut(s)	121
SspMI	CTAG	2 cut(s)	242, 643
StyD4I	CCNGG	1 cut(s)	626
TaiI	ACGT	2 cut(s)	24, 231
TaqI	TCGA	1 cut(s)	395
TasI	AATT	7 cut(s)	62, 155, 162, 294, 372, 423, 583
TatI	WGTACW	1 cut(s)	246
Tru1I	TTAA	5 cut(s)	27, 165, 404, 426, 566
Tru9I	TTAA	5 cut(s)	27, 165, 404, 426, 566
TseI	GCWGC	2 cut(s)	334, 617
TspDTI	ATGAA	3 cut(s)	131, 344, 375
VspI	ATTAAT	1 cut(s)	165
XceI	RCATGY	2 cut(s)	201, 543
XspI	CTAG	2 cut(s)	242, 643

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.