Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006526

Physical Location & Seq

Genomic Coordinates Forward (+)

85305279 .. 85309064

Gene Structure 3786 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00147510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGAACAAGGGAAGCTTAGGCTCTAAGCTCAAGCTTACTCTTCCTCCTCCTGATGAAGATTCTATCAAGAAGTTCCTGACTCAAAGTGGTACCTTTATGGATGGGGATCTGCTGGTGAATAGGGAAGGGGTTCGGATCGTCTCTCATAGAGAAGTTGAAGTTCCAGCCCCTATTCAAGCAGCAGACAATCAGATGATTTTAGCAGATCTCTACGTGGTTAAAGTCATTGGTAAAGGAAATGGTGGGGTTGTGCAATTGGTTCAGCACAAATGGACTGGCCAGTTTTTTGCATTGAAGGTAATCCAAATGAATATTCAGGAGTCTATTCGCAAGCAGATTGCACAAGAATTGAAAATTAATCAATCATCACAATGTCCCTATATTGTTGTATGTTACCAATCCTTCTATGATAATGGTTGCATTTCAATTATCCTAGAGTACATGGATGGTGGATCTTTAGCAGATCTTCTGAGAAAAGTCAGATCAATTCCAGAGCCATTTATTTCTGCTATGTGTAAGCAGGTGCTGCGCGGTTTGTTGTATCTTCATCATGAAAAACACATAATTCACAGGGACTTCAAACCCTCGAACTTGTTAATAAATCATAGAGGAGAAATTAAGATAACTGACTTTGGTGTCAGTGCAATAAAGGCAAACACCTCTGAACAGGCAAATACTTTTGTTGGCACATATAACTATATGTCGGTAACTAACAGTAAATTCCCATATACACCACCAGATCAAAGTGAAGGATGGGAAAACTTTTTTGAGCTTATGAGTGCTGTTGTTGACTTGCCACCACCTTCTGCACCTTCCGATCAGTTTTCTCCAGAGTTCTGCTCATTTATTTCTGCATGTGTACAGAAAGATCCTAAAAAGAGATTGTCAGCACATGATCTCCTAGTGCATCCTTTTATCAGCATGTACGACGACTTGAATATCGACCTTTCATCTTACTTCACCGAAGCAGGATCTCCACTTGCAACCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0000187 GO:0001932 GO:0001934 GO:0002376 GO:0003002 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004708 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0007346 GO:0007389 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009605 GO:0009607 GO:0009628 GO:0009631 GO:0009651 GO:0009814 GO:0009893 GO:0009914 GO:0009966 GO:0009967 GO:0009987 GO:0010051 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0010817 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0031098 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043207 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045087 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051704 GO:0051707 GO:0051716 GO:0051726 GO:0060255 GO:0060918 GO:0065007 GO:0065008 GO:0065009 GO:0071704 GO:0071900 GO:0071902 GO:0071944 GO:0080090 GO:0098542 GO:0140096 GO:1901564 GO:1902531 GO:1902533

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Pkinase

Protein Analysis

330

Amino Acids

36.96

Weight (kDa)

6.14

Isoelectric Point (pI)

46.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	72 - 235	2.8e-45	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	73 - 223	7.9e-23	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006526)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26070 AT4G26070 AT4G26070 AT4G26070 AT4G26070 AT4G29810 AT4G29810 AT4G29810
fragaria_vesca	FvH4_1g08020 FvH4_1g08020 FvH4_1g08020 FvH4_1g08020
malus_domestica	MD02G1084700.v1.1 MD15G1212100.v1.1
prunus_persica	Prupe.7G204700_v2.0.a1 Prupe.7G204700_v2.0.a1 Prupe.7G204700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0094061
rosa_laevigata	RLG00000016450
rosa_multiflora	Rmu_ssc0000469.1_g000003
rosa_roxburghii	Rroxscaffold_2G00147510
rosa_rugosa	Rorug02G0040700
rosa_samantha	Rh2AG088200 Rh2BG088400 Rh2CG090700 Rh2DG087400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	511
AasI	GACNNNNNNGTC	1 cut(s)	635
Acc36I	ACCTGC	1 cut(s)	511
Acc65I	GGTACC	1 cut(s)	89
AccB1I	GGYRCC	1 cut(s)	89
AccII	CGCG	1 cut(s)	531
AciI	CCGC	1 cut(s)	531
AclWI	GGATC	5 cut(s)	114, 143, 460, 863, 979
AcoI	YGGCCR	1 cut(s)	277
AcsI	RAATTY	1 cut(s)	719
AfaI	GTAC	4 cut(s)	91, 440, 861, 926
AgsI	TTSAA	7 cut(s)	158, 176, 295, 352, 426, 580, 937
AjuI	GAANNNNNNNTTGG	2 cut(s)	297, 329
AluBI	AGCT	4 cut(s)	15, 28, 34, 772
AluI	AGCT	4 cut(s)	15, 28, 34, 772
Alw26I	GTCTC	1 cut(s)	145
AlwI	GGATC	5 cut(s)	114, 143, 460, 863, 979
AlwNI	CAGNNNCTG	1 cut(s)	526
AoxI	GGCC	1 cut(s)	277
ApeKI	GCWGC	2 cut(s)	179, 526
ApoI	RAATTY	1 cut(s)	719
AseI	ATTAAT	1 cut(s)	357
Asp700I	GAANNNNTTC	1 cut(s)	129
Asp718I	GGTACC	1 cut(s)	89
AspLEI	GCGC	1 cut(s)	531
AsuHPI	GGTGA	2 cut(s)	127, 952
BalI	TGGCCA	1 cut(s)	279
BanI	GGYRCC	1 cut(s)	89
BbvI	GCAGC	2 cut(s)	191, 513
BccI	CCATC	3 cut(s)	95, 440, 747
BcoDI	GTCTC	1 cut(s)	145
BfaI	CTAG	2 cut(s)	434, 902
BfuAI	ACCTGC	1 cut(s)	511
BglII	AGATCT	2 cut(s)	205, 463
BisI	GCNGC	2 cut(s)	180, 527
BlsI	GCNGC	2 cut(s)	181, 528
BmiI	GGNNCC	1 cut(s)	91
BmsI	GCATC	1 cut(s)	916
BplI	GAGNNNNNCTC	2 cut(s)	824, 856
BpmI	CTGGAG	1 cut(s)	813
Bpu10I	CCTNAGC	1 cut(s)	16
BpuEI	CTTGAG	1 cut(s)	14
BsaAI	YACGTR	1 cut(s)	214
BsaBI	GATNNNNATC	1 cut(s)	105
BsaXI	ACNNNNNCTCC	4 cut(s)	28, 58, 882, 912
Bse1I	ACTGG	2 cut(s)	280, 280
Bse8I	GATNNNNATC	1 cut(s)	105
BseGI	GGATG	4 cut(s)	106, 451, 758, 907
BseJI	GATNNNNATC	1 cut(s)	105
BseMII	CTCAG	1 cut(s)	461
BseNI	ACTGG	2 cut(s)	280, 280
BseRI	GAGGAG	2 cut(s)	36, 624
BseXI	GCAGC	2 cut(s)	191, 513
BsgI	GTGCAG	1 cut(s)	792
Bsh1236I	CGCG	1 cut(s)	531
BshFI	GGCC	1 cut(s)	279
BshNI	GGYRCC	1 cut(s)	89
BslFI	GGGAC	2 cut(s)	360, 587
BsmAI	GTCTC	1 cut(s)	145
BsmBI	CGTCTC	1 cut(s)	145
BsmFI	GGGAC	2 cut(s)	360, 587
BsnI	GGCC	1 cut(s)	279
Bsp1407I	TGTACA	1 cut(s)	859
BspACI	CCGC	1 cut(s)	531
BspANI	GGCC	1 cut(s)	279
BspCNI	CTCAG	1 cut(s)	462
BspFNI	CGCG	1 cut(s)	531
BspHI	TCATGA	1 cut(s)	550
BspLI	GGNNCC	1 cut(s)	91
BspMI	ACCTGC	1 cut(s)	511
BspPI	GGATC	5 cut(s)	114, 143, 460, 863, 979
BspT107I	GGYRCC	1 cut(s)	89
BsrGI	TGTACA	1 cut(s)	859
BsrI	ACTGG	2 cut(s)	280, 280
Bst4CI	ACNGT	1 cut(s)	716
Bst6I	CTCTTC	1 cut(s)	45
BstAPI	GCANNNNNTGC	1 cut(s)	526
BstAUI	TGTACA	1 cut(s)	859
BstBAI	YACGTR	1 cut(s)	214
BstC8I	GCNNGC	1 cut(s)	332
BstDEI	CTNAG	3 cut(s)	16, 24, 470
BstF5I	GGATG	4 cut(s)	106, 451, 758, 907
BstFNI	CGCG	1 cut(s)	531
BstHHI	GCGC	1 cut(s)	531
BstMAI	GTCTC	1 cut(s)	145
BstMWI	GCNNNNNNNGC	2 cut(s)	526, 650
BstNSI	RCATGY	2 cut(s)	858, 925
BstUI	CGCG	1 cut(s)	531
BstV1I	GCAGC	2 cut(s)	191, 513
BstX2I	RGATCY	6 cut(s)	106, 205, 452, 463, 868, 971
BstYI	RGATCY	6 cut(s)	106, 205, 452, 463, 868, 971
BsuRI	GGCC	1 cut(s)	279
BtsCI	GGATG	4 cut(s)	106, 451, 758, 907
BtsIMutI	CAGTG	1 cut(s)	646
BveI	ACCTGC	1 cut(s)	511
Cac8I	GCNNGC	1 cut(s)	332
CaiI	CAGNNNCTG	1 cut(s)	526
CciI	TCATGA	1 cut(s)	550
CfoI	GCGC	1 cut(s)	531
Csp6I	GTAC	4 cut(s)	90, 439, 860, 925
CviAII	CATG	5 cut(s)	442, 551, 855, 893, 922
CviJI	RGCY	8 cut(s)	15, 21, 28, 34, 167, 279, 496, 772
CviKI_1	RGCY	8 cut(s)	15, 21, 28, 34, 167, 279, 496, 772
CviQI	GTAC	4 cut(s)	90, 439, 860, 925
DdeI	CTNAG	3 cut(s)	16, 24, 470
DrdI	GACNNNNNNGTC	1 cut(s)	635
DseDI	GACNNNNNNGTC	1 cut(s)	635
EaeI	YGGCCR	1 cut(s)	277
Eam1104I	CTCTTC	1 cut(s)	45
EarI	CTCTTC	1 cut(s)	45
Esp3I	CGTCTC	1 cut(s)	145
FaeI	CATG	5 cut(s)	445, 554, 858, 896, 925
FalI	AAGNNNNNCTT	1 cut(s)	31
FaqI	GGGAC	2 cut(s)	360, 587
FatI	CATG	5 cut(s)	441, 550, 854, 892, 921
Fnu4HI	GCNGC	2 cut(s)	180, 527
FokI	GGATG	4 cut(s)	113, 458, 765, 894
Fsp4HI	GCNGC	2 cut(s)	180, 527
FspBI	CTAG	2 cut(s)	434, 902
GlaI	GCGC	1 cut(s)	530
GluI	GCNGC	2 cut(s)	180, 527
GsuI	CTGGAG	1 cut(s)	813
HaeIII	GGCC	1 cut(s)	279
HhaI	GCGC	1 cut(s)	531
Hin1II	CATG	5 cut(s)	445, 554, 858, 896, 925
Hin6I	GCGC	1 cut(s)	529
HinP1I	GCGC	1 cut(s)	529
HincII	GTYRAC	1 cut(s)	790
HindII	GTYRAC	1 cut(s)	790
HindIII	AAGCTT	2 cut(s)	13, 32
HinfI	GANTC	3 cut(s)	59, 79, 320
HphI	GGTGA	2 cut(s)	127, 952
Hpy166II	GTNNAC	2 cut(s)	790, 860
Hpy188I	TCNGA	6 cut(s)	135, 192, 471, 482, 664, 817
Hpy188III	TCNNGA	7 cut(s)	50, 67, 76, 317, 491, 551, 830
Hpy8I	GTNNAC	2 cut(s)	790, 860
Hpy99I	CGWCG	1 cut(s)	932
HpyAV	CCTTC	6 cut(s)	119, 289, 412, 743, 813, 822
HpyCH4III	ACNGT	1 cut(s)	716
HpyCH4IV	ACGT	1 cut(s)	213
HpyCH4V	TGCA	9 cut(s)	253, 290, 341, 420, 644, 809, 854, 907, 983
HpyF10VI	GCNNNNNNNGC	2 cut(s)	526, 650
HpyF3I	CTNAG	3 cut(s)	16, 24, 470
HpySE526I	ACGT	1 cut(s)	213
Hsp92II	CATG	5 cut(s)	445, 554, 858, 896, 925
HspAI	GCGC	1 cut(s)	529
KpnI	GGTACC	1 cut(s)	93
Lsp1109I	GCAGC	2 cut(s)	191, 513
LweI	GCATC	1 cut(s)	916
MaeI	CTAG	2 cut(s)	434, 902
MaeII	ACGT	1 cut(s)	213
MaeIII	GTNAC	2 cut(s)	392, 706
MboII	GAAGA	4 cut(s)	32, 68, 458, 536
MfeI	CAATTG	1 cut(s)	254
MflI	RGATCY	6 cut(s)	106, 205, 452, 463, 868, 971
MlsI	TGGCCA	1 cut(s)	279
MluCI	AATT	8 cut(s)	254, 347, 354, 426, 486, 564, 615, 719
MluNI	TGGCCA	1 cut(s)	279
MlyI	GAGTC	2 cut(s)	73, 329
MnlI	CCTC	5 cut(s)	54, 57, 595, 602, 670
Mox20I	TGGCCA	1 cut(s)	279
MroXI	GAANNNNTTC	1 cut(s)	129
MscI	TGGCCA	1 cut(s)	279
MseI	TTAA	5 cut(s)	219, 357, 596, 618, 991
MslI	CAYNNNNRTG	1 cut(s)	370
Msp20I	TGGCCA	1 cut(s)	279
MunI	CAATTG	1 cut(s)	254
MvnI	CGCG	1 cut(s)	531
MwoI	GCNNNNNNNGC	2 cut(s)	526, 650
NlaIII	CATG	5 cut(s)	445, 554, 858, 896, 925
NlaIV	GGNNCC	1 cut(s)	91
NspI	RCATGY	2 cut(s)	858, 925
PagI	TCATGA	1 cut(s)	550
PaqCI	CACCTGC	1 cut(s)	511
PdmI	GAANNNNTTC	1 cut(s)	129
PfeI	GAWTC	1 cut(s)	59
PkrI	GCNGC	2 cut(s)	181, 528
PleI	GAGTC	2 cut(s)	73, 328
PpsI	GAGTC	2 cut(s)	73, 328
Ppu21I	YACGTR	1 cut(s)	214
PshBI	ATTAAT	1 cut(s)	357
PspN4I	GGNNCC	1 cut(s)	91
PstNI	CAGNNNCTG	1 cut(s)	526
PsuI	RGATCY	6 cut(s)	106, 205, 452, 463, 868, 971
RsaI	GTAC	4 cut(s)	91, 440, 861, 926
RsaNI	GTAC	4 cut(s)	90, 439, 860, 925
RseI	CAYNNNNRTG	1 cut(s)	370
SaqAI	TTAA	5 cut(s)	219, 357, 596, 618, 991
SatI	GCNGC	2 cut(s)	180, 527
SchI	GAGTC	2 cut(s)	73, 329
SfaNI	GCATC	1 cut(s)	916
SmiMI	CAYNNNNRTG	1 cut(s)	370
SmlI	CTYRAG	1 cut(s)	29
SmoI	CTYRAG	1 cut(s)	29
Sse9I	AATT	8 cut(s)	254, 347, 354, 426, 486, 564, 615, 719
SsiI	CCGC	1 cut(s)	531
SspI	AATATT	1 cut(s)	313
SspMI	CTAG	2 cut(s)	434, 902
TaaI	ACNGT	1 cut(s)	716
TaiI	ACGT	1 cut(s)	216
TaqI	TCGA	2 cut(s)	587, 942
TasI	AATT	8 cut(s)	254, 347, 354, 426, 486, 564, 615, 719
TatI	WGTACW	2 cut(s)	438, 859
TfiI	GAWTC	1 cut(s)	59
Tru1I	TTAA	5 cut(s)	219, 357, 596, 618, 991
Tru9I	TTAA	5 cut(s)	219, 357, 596, 618, 991
TscAI	CASTG	1 cut(s)	646
TseI	GCWGC	2 cut(s)	179, 526
TspDTI	ATGAA	6 cut(s)	17, 69, 323, 536, 567, 939
TspRI	CASTG	1 cut(s)	646
VspI	ATTAAT	1 cut(s)	357
XapI	RAATTY	1 cut(s)	719
XceI	RCATGY	2 cut(s)	858, 925
XmnI	GAANNNNTTC	1 cut(s)	129
XspI	CTAG	2 cut(s)	434, 902

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.