Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008605

Physical Location & Seq

Genomic Coordinates Reverse (-)

14985559 .. 14986876

Gene Structure 1318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G30770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGCCTGTGCCAGATCCACGGGCGGGGCAGGCGTTCATCTGTCTCATTACTTTATTTCTTTTCCTATCAATCGCGGTTGGAGGCGGTTGTCTAATTGCATATACAATTCTTCCTTACCCTCCAGTTTGGCTCTCCTACCTCGGCATTGTCTTTGTTTGTCTCCCTTGGTTCTTTTGGATCCTAACATTTGCCTACCGCATTGTTTCACGTACTTTTGGATTTAGGATGGTTGTTGGATCCGGTGGTAATAATAACAACGCGAATGGAGAAACCATGACGCGTGATCTTGACCCTCCTGAGCAATCTTTAGAGTCTCCTGATGATGATGATCCAGAGCCAATAGCTCACCCACAAGGCCAAGTTCTAGTGTCGATTGAAGGGAATCAATCGAAGAAACGAATGTCAACCTCCAGTAATTCTACTATCGCTTCGCATGAAAGTGAGATGCCACTAGCCATTTCTATGGCCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

157

Amino Acids

17.16

Weight (kDa)

4.66

Isoelectric Point (pI)

54.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008605)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30770
fragaria_vesca	FvH4_1g24680
malus_domestica	MD00G1091900.v1.1
prunus_persica	Prupe.4G274100_v2.0.a1
pyrus_communis	pycom01g00490
rosa_chinensis	RchiOBHm_Chr2g0122171
rosa_laevigata	RLG00000018657 RLG00000018660
rosa_multiflora	Rmu_sc0000805.1_g000013 Rmu_sc0004574.1_g000023
rosa_roxburghii	Rroxscaffold_2G00121940 Rroxscaffold_2G00121980
rosa_rugosa	Rorug02G0236700 Rorug02G0236800
rosa_samantha	Rh2AG293700 Rh2AG294400 Rh2BG303900 Rh2BG304000 Rh2CG282200 Rh2CG282300 Rh2DG317600 Rh2DG318200
rosa_wichuraiana	Rw2G023530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	74, 260, 280
AciI	CCGC	4 cut(s)	23, 74, 84, 196
AclWI	GGATC	6 cut(s)	8, 172, 185, 231, 244, 323
AfaI	GTAC	1 cut(s)	211
AfiI	CCNNNNNNNGG	1 cut(s)	23
AflIII	ACRYGT	1 cut(s)	278
AgsI	TTSAA	1 cut(s)	377
AluBI	AGCT	1 cut(s)	344
AluI	AGCT	1 cut(s)	344
Alw26I	GTCTC	3 cut(s)	47, 164, 318
AlwI	GGATC	6 cut(s)	8, 172, 185, 231, 244, 323
AoxI	GGCC	2 cut(s)	355, 465
AsuHPI	GGTGA	1 cut(s)	338
BamHI	GGATCC	2 cut(s)	177, 236
BccI	CCATC	1 cut(s)	220
BcoDI	GTCTC	3 cut(s)	47, 164, 318
BfaI	CTAG	2 cut(s)	365, 452
BmiI	GGNNCC	2 cut(s)	179, 238
BmsI	GCATC	1 cut(s)	435
BpmI	CTGGAG	2 cut(s)	105, 394
Bpu10I	CCTNAGC	1 cut(s)	297
BsaAI	YACGTR	1 cut(s)	209
BsaBI	GATNNNNATC	1 cut(s)	327
BsaJI	CCNNGG	3 cut(s)	17, 139, 164
BsaWI	WCCGGW	1 cut(s)	239
Bsc4I	CCNNNNNNNGG	1 cut(s)	23
Bse1I	ACTGG	2 cut(s)	122, 411
Bse8I	GATNNNNATC	1 cut(s)	327
BseDI	CCNNGG	3 cut(s)	17, 139, 164
BseGI	GGATG	1 cut(s)	231
BseJI	GATNNNNATC	1 cut(s)	327
BseLI	CCNNNNNNNGG	1 cut(s)	23
BseMII	CTCAG	1 cut(s)	288
BseNI	ACTGG	2 cut(s)	122, 411
Bsh1236I	CGCG	3 cut(s)	74, 260, 280
BshFI	GGCC	2 cut(s)	357, 467
BsiSI	CCGG	1 cut(s)	240
BslI	CCNNNNNNNGG	1 cut(s)	23
BsmAI	GTCTC	3 cut(s)	47, 164, 318
BsnI	GGCC	2 cut(s)	357, 467
Bsp143I	GATC	5 cut(s)	13, 177, 236, 283, 328
BspACI	CCGC	4 cut(s)	23, 74, 84, 196
BspANI	GGCC	2 cut(s)	357, 467
BspCNI	CTCAG	1 cut(s)	289
BspFNI	CGCG	3 cut(s)	74, 260, 280
BspHI	TCATGA	1 cut(s)	470
BspLI	GGNNCC	2 cut(s)	179, 238
BspPI	GGATC	6 cut(s)	8, 172, 185, 231, 244, 323
BsrI	ACTGG	2 cut(s)	122, 411
BssECI	CCNNGG	3 cut(s)	17, 139, 164
BssMI	GATC	5 cut(s)	13, 177, 236, 283, 328
BssT1I	CCWWGG	1 cut(s)	164
BstBAI	YACGTR	1 cut(s)	209
BstC8I	GCNNGC	1 cut(s)	30
BstDEI	CTNAG	1 cut(s)	297
BstDSI	CCRYGG	1 cut(s)	17
BstF5I	GGATG	1 cut(s)	231
BstFNI	CGCG	3 cut(s)	74, 260, 280
BstKTI	GATC	5 cut(s)	16, 180, 239, 286, 331
BstMAI	GTCTC	3 cut(s)	47, 164, 318
BstMBI	GATC	5 cut(s)	13, 177, 236, 283, 328
BstMWI	GCNNNNNNNGC	1 cut(s)	29
BstUI	CGCG	3 cut(s)	74, 260, 280
BstX2I	RGATCY	3 cut(s)	13, 177, 236
BstXI	CCANNNNNNTGG	1 cut(s)	463
BstYI	RGATCY	3 cut(s)	13, 177, 236
BsuRI	GGCC	2 cut(s)	357, 467
BtgI	CCRYGG	1 cut(s)	17
BtsCI	GGATG	1 cut(s)	231
Cac8I	GCNNGC	1 cut(s)	30
CciI	TCATGA	1 cut(s)	470
CseI	GACGC	1 cut(s)	286
Csp6I	GTAC	1 cut(s)	210
CviAII	CATG	3 cut(s)	274, 434, 471
CviJI	RGCY	6 cut(s)	130, 337, 344, 357, 455, 467
CviKI_1	RGCY	6 cut(s)	130, 337, 344, 357, 455, 467
CviQI	GTAC	1 cut(s)	210
DdeI	CTNAG	1 cut(s)	297
DpnI	GATC	5 cut(s)	15, 179, 238, 285, 330
DpnII	GATC	5 cut(s)	13, 177, 236, 283, 328
Eco130I	CCWWGG	1 cut(s)	164
EcoT14I	CCWWGG	1 cut(s)	164
ErhI	CCWWGG	1 cut(s)	164
FaeI	CATG	3 cut(s)	277, 437, 474
FaiI	YATR	6 cut(s)	100, 102, 275, 435, 464, 472
FatI	CATG	3 cut(s)	273, 433, 470
FauI	CCCGC	1 cut(s)	16
FokI	GGATG	1 cut(s)	238
FspBI	CTAG	2 cut(s)	365, 452
GsuI	CTGGAG	2 cut(s)	105, 394
HaeIII	GGCC	2 cut(s)	357, 467
HapII	CCGG	1 cut(s)	240
HgaI	GACGC	1 cut(s)	286
Hin1II	CATG	3 cut(s)	277, 437, 474
HincII	GTYRAC	1 cut(s)	405
HindII	GTYRAC	1 cut(s)	405
HinfI	GANTC	2 cut(s)	311, 382
HpaII	CCGG	1 cut(s)	240
HphI	GGTGA	1 cut(s)	338
Hpy166II	GTNNAC	1 cut(s)	405
Hpy188III	TCNNGA	5 cut(s)	287, 296, 317, 332, 471
Hpy8I	GTNNAC	1 cut(s)	405
HpyAV	CCTTC	1 cut(s)	371
HpyCH4IV	ACGT	1 cut(s)	208
HpyCH4V	TGCA	1 cut(s)	98
HpyF10VI	GCNNNNNNNGC	1 cut(s)	29
HpyF3I	CTNAG	1 cut(s)	297
HpySE526I	ACGT	1 cut(s)	208
Hsp92II	CATG	3 cut(s)	277, 437, 474
Kzo9I	GATC	5 cut(s)	13, 177, 236, 283, 328
LpnPI	CCDG	9 cut(s)	14, 18, 24, 135, 253, 309, 330, 345, 424
LweI	GCATC	1 cut(s)	435
MaeI	CTAG	2 cut(s)	365, 452
MaeII	ACGT	1 cut(s)	208
MalI	GATC	5 cut(s)	15, 179, 238, 285, 330
MboI	GATC	5 cut(s)	13, 177, 236, 283, 328
MboII	GAAGA	2 cut(s)	101, 403
MflI	RGATCY	3 cut(s)	13, 177, 236
MluCI	AATT	3 cut(s)	93, 105, 415
MluI	ACGCGT	1 cut(s)	278
MlyI	GAGTC	1 cut(s)	320
MmeI	TCCRAC	2 cut(s)	58, 214
MnlI	CCTC	5 cut(s)	74, 129, 149, 303, 418
MslI	CAYNNNNRTG	2 cut(s)	438, 461
MspI	CCGG	1 cut(s)	240
MvnI	CGCG	3 cut(s)	74, 260, 280
MwoI	GCNNNNNNNGC	1 cut(s)	29
NdeII	GATC	5 cut(s)	13, 177, 236, 283, 328
NlaIII	CATG	3 cut(s)	277, 437, 474
NlaIV	GGNNCC	2 cut(s)	179, 238
NmeAIII	GCCGAG	1 cut(s)	120
PagI	TCATGA	1 cut(s)	470
PfeI	GAWTC	1 cut(s)	382
PleI	GAGTC	1 cut(s)	319
PpsI	GAGTC	1 cut(s)	319
Ppu21I	YACGTR	1 cut(s)	209
PspN4I	GGNNCC	2 cut(s)	179, 238
PsuI	RGATCY	3 cut(s)	13, 177, 236
RsaI	GTAC	1 cut(s)	211
RsaNI	GTAC	1 cut(s)	210
RseI	CAYNNNNRTG	2 cut(s)	438, 461
Sau3AI	GATC	5 cut(s)	13, 177, 236, 283, 328
SchI	GAGTC	1 cut(s)	320
SetI	ASST	4 cut(s)	141, 211, 346, 410
SfaNI	GCATC	1 cut(s)	435
SmiMI	CAYNNNNRTG	2 cut(s)	438, 461
Sse9I	AATT	3 cut(s)	93, 105, 415
SsiI	CCGC	4 cut(s)	23, 74, 84, 196
SspMI	CTAG	2 cut(s)	365, 452
StyI	CCWWGG	1 cut(s)	164
TaiI	ACGT	1 cut(s)	211
TaqI	TCGA	2 cut(s)	371, 389
TasI	AATT	3 cut(s)	93, 105, 415
TfiI	GAWTC	1 cut(s)	382
TspDTI	ATGAA	2 cut(s)	25, 450
XspI	CTAG	2 cut(s)	365, 452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.