Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0008605

Physical Location & Seq

Genomic Coordinates Reverse (-)

54760698 .. 54761246

Gene Structure 549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00121940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGTTGTTTGTGAGGACCAACGTGGTGGTGTAAGTGGAAGTGGAAGTGGAGGTGGAGATGGCAGCGGAGCTTCATTAATATGGTTTGTTACTTGCTTTTTATTCATATCTATAATGGCCGGAGGCGTATGCCTTTTGATGTATATAATCATTCCTCATGACCCAGCAACCATGTCTTGGCTTCCTATTACTGGAGTTGCATTGATTTGCCTTCCATGGTTATTTTGGATCTTCACATTCATATATCGTATCATTAATCGGGTGTGCATTAAGAACTCTAATTCTAGTGGCATTGCAACAATTGCAAATGTTAATACATGTGGTCCTGTTGGTGGAGAGAATAACACTAACGCTGCAAATACATCTACGACGGCGGTGTCGAATGAGGTTGCTGGGGATCTAAAGATATCAGATGGTTATGTTCGTGGTGGTCTTGGAGGACAACCAGTAGGAAGCGGCATTGCAAAGCGAAGTAATTCGTCACTAACCAATCAGAGCCTTGCATCTCATGAGAGTGAATTGCCTTTGGCCTCATCGATGGTATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

182

Amino Acids

18.81

Weight (kDa)

5.53

Isoelectric Point (pI)

32.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008605)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30770
fragaria_vesca	FvH4_1g24680
malus_domestica	MD00G1091900.v1.1
prunus_persica	Prupe.4G274100_v2.0.a1
pyrus_communis	pycom01g00490
rosa_chinensis	RchiOBHm_Chr2g0122171
rosa_laevigata	RLG00000018657 RLG00000018660
rosa_multiflora	Rmu_sc0000805.1_g000013 Rmu_sc0004574.1_g000023
rosa_roxburghii	Rroxscaffold_2G00121940 Rroxscaffold_2G00121980
rosa_rugosa	Rorug02G0236700 Rorug02G0236800
rosa_samantha	Rh2AG293700 Rh2AG294400 Rh2BG303900 Rh2BG304000 Rh2CG282200 Rh2CG282300 Rh2DG317600 Rh2DG318200
rosa_wichuraiana	Rw2G023530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	376
AccB7I	CCANNNNNTGG	1 cut(s)	177
AciI	CCGC	3 cut(s)	66, 374, 456
AclWI	GGATC	2 cut(s)	236, 405
AcoI	YGGCCR	1 cut(s)	117
AfiI	CCNNNNNNNGG	3 cut(s)	177, 191, 332
AflIII	ACRYGT	1 cut(s)	317
AluBI	AGCT	1 cut(s)	71
AluI	AGCT	1 cut(s)	71
AlwI	GGATC	2 cut(s)	236, 405
AoxI	GGCC	2 cut(s)	117, 528
ApeKI	GCWGC	2 cut(s)	63, 353
AseI	ATTAAT	2 cut(s)	77, 255
Asp700I	GAANNNNTTC	1 cut(s)	475
AspS9I	GGNCC	2 cut(s)	16, 323
AvaII	GGWCC	2 cut(s)	16, 323
BbvI	GCAGC	2 cut(s)	75, 340
BccI	CCATC	3 cut(s)	53, 407, 532
BceAI	ACGGC	1 cut(s)	387
BfaI	CTAG	1 cut(s)	285
BisI	GCNGC	3 cut(s)	64, 354, 457
BlsI	GCNGC	3 cut(s)	65, 355, 458
Bme18I	GGWCC	2 cut(s)	16, 323
BmgT120I	GGNCC	2 cut(s)	16, 323
BmsI	GCATC	1 cut(s)	512
BpmI	CTGGAG	1 cut(s)	213
Bsa29I	ATCGAT	1 cut(s)	536
BsaJI	CCNNGG	1 cut(s)	215
Bsc4I	CCNNNNNNNGG	3 cut(s)	177, 191, 332
Bse1I	ACTGG	2 cut(s)	196, 446
Bse3DI	GCAATG	2 cut(s)	291, 459
BseCI	ATCGAT	1 cut(s)	536
BseDI	CCNNGG	1 cut(s)	215
BseLI	CCNNNNNNNGG	3 cut(s)	177, 191, 332
BseMI	GCAATG	2 cut(s)	291, 459
BseNI	ACTGG	2 cut(s)	196, 446
BseXI	GCAGC	2 cut(s)	75, 340
BseYI	CCCAGC	2 cut(s)	163, 392
BshFI	GGCC	2 cut(s)	119, 530
BshVI	ATCGAT	1 cut(s)	536
BsiSI	CCGG	1 cut(s)	120
BslI	CCNNNNNNNGG	3 cut(s)	177, 191, 332
BsnI	GGCC	2 cut(s)	119, 530
Bsp143I	GATC	2 cut(s)	228, 397
Bsp19I	CCATGG	1 cut(s)	215
BspACI	CCGC	3 cut(s)	66, 374, 456
BspANI	GGCC	2 cut(s)	119, 530
BspDI	ATCGAT	1 cut(s)	536
BspHI	TCATGA	2 cut(s)	157, 508
BspPI	GGATC	2 cut(s)	236, 405
BsrDI	GCAATG	2 cut(s)	291, 459
BsrI	ACTGG	2 cut(s)	196, 446
BssECI	CCNNGG	1 cut(s)	215
BssMI	GATC	2 cut(s)	228, 397
BssT1I	CCWWGG	1 cut(s)	215
BstAPI	GCANNNNNTGC	1 cut(s)	302
BstDSI	CCRYGG	1 cut(s)	215
BstKTI	GATC	2 cut(s)	231, 400
BstMBI	GATC	2 cut(s)	228, 397
BstMWI	GCNNNNNNNGC	1 cut(s)	302
BstNSI	RCATGY	1 cut(s)	321
BstV1I	GCAGC	2 cut(s)	75, 340
BstX2I	RGATCY	2 cut(s)	228, 397
BstXI	CCANNNNNNTGG	1 cut(s)	26
BstYI	RGATCY	2 cut(s)	228, 397
Bsu15I	ATCGAT	1 cut(s)	536
BsuRI	GGCC	2 cut(s)	119, 530
BsuTUI	ATCGAT	1 cut(s)	536
BtgI	CCRYGG	1 cut(s)	215
CciI	TCATGA	2 cut(s)	157, 508
Cfr13I	GGNCC	2 cut(s)	16, 323
ClaI	ATCGAT	1 cut(s)	536
CviAII	CATG	5 cut(s)	158, 172, 216, 318, 509
CviJI	RGCY	5 cut(s)	71, 119, 181, 498, 530
CviKI_1	RGCY	5 cut(s)	71, 119, 181, 498, 530
DpnI	GATC	2 cut(s)	230, 399
DpnII	GATC	2 cut(s)	228, 397
DrdI	GACNNNNNNGTC	1 cut(s)	376
DseDI	GACNNNNNNGTC	1 cut(s)	376
EaeI	YGGCCR	1 cut(s)	117
Eco130I	CCWWGG	1 cut(s)	215
Eco32I	GATATC	1 cut(s)	408
Eco47I	GGWCC	2 cut(s)	16, 323
EcoRV	GATATC	1 cut(s)	408
EcoT14I	CCWWGG	1 cut(s)	215
ErhI	CCWWGG	1 cut(s)	215
FaeI	CATG	5 cut(s)	161, 175, 219, 321, 512
FatI	CATG	5 cut(s)	157, 171, 215, 317, 508
Fnu4HI	GCNGC	3 cut(s)	64, 354, 457
Fsp4HI	GCNGC	3 cut(s)	64, 354, 457
FspBI	CTAG	1 cut(s)	285
GluI	GCNGC	3 cut(s)	64, 354, 457
GsaI	CCCAGC	2 cut(s)	167, 396
GsuI	CTGGAG	1 cut(s)	213
HaeIII	GGCC	2 cut(s)	119, 530
HapII	CCGG	1 cut(s)	120
Hin1II	CATG	5 cut(s)	161, 175, 219, 321, 512
HpaII	CCGG	1 cut(s)	120
Hpy188I	TCNGA	2 cut(s)	412, 495
Hpy188III	TCNNGA	2 cut(s)	158, 509
Hpy99I	CGWCG	1 cut(s)	373
HpyAV	CCTTC	1 cut(s)	221
HpyCH4IV	ACGT	1 cut(s)	22
HpyCH4V	TGCA	7 cut(s)	200, 267, 296, 305, 356, 464, 503
HpyF10VI	GCNNNNNNNGC	1 cut(s)	302
HpySE526I	ACGT	1 cut(s)	22
Hsp92II	CATG	5 cut(s)	161, 175, 219, 321, 512
Kzo9I	GATC	2 cut(s)	228, 397
LmnI	GCTCC	1 cut(s)	68
LpnPI	CCDG	6 cut(s)	133, 177, 177, 339, 378, 459
Lsp1109I	GCAGC	2 cut(s)	75, 340
LweI	GCATC	1 cut(s)	512
MaeI	CTAG	1 cut(s)	285
MaeII	ACGT	1 cut(s)	22
MaeIII	GTNAC	2 cut(s)	88, 480
MalI	GATC	2 cut(s)	230, 399
MboI	GATC	2 cut(s)	228, 397
MboII	GAAGA	1 cut(s)	223
MfeI	CAATTG	1 cut(s)	300
MflI	RGATCY	2 cut(s)	228, 397
MluCI	AATT	4 cut(s)	280, 300, 475, 518
MnlI	CCTC	7 cut(s)	7, 44, 116, 165, 379, 431, 541
MroXI	GAANNNNTTC	1 cut(s)	475
MseI	TTAA	5 cut(s)	77, 255, 270, 312, 547
MslI	CAYNNNNRTG	2 cut(s)	79, 513
MspA1I	CMGCKG	1 cut(s)	66
MspI	CCGG	1 cut(s)	120
MunI	CAATTG	1 cut(s)	300
MwoI	GCNNNNNNNGC	1 cut(s)	302
NcoI	CCATGG	1 cut(s)	215
NdeII	GATC	2 cut(s)	228, 397
NlaIII	CATG	5 cut(s)	161, 175, 219, 321, 512
NmuCI	GTSAC	1 cut(s)	480
NspI	RCATGY	1 cut(s)	321
PagI	TCATGA	2 cut(s)	157, 508
PciI	ACATGT	1 cut(s)	317
PcsI	WCGNNNNNNNCGW	1 cut(s)	377
PdmI	GAANNNNTTC	1 cut(s)	475
PflMI	CCANNNNNTGG	1 cut(s)	177
PkrI	GCNGC	3 cut(s)	65, 355, 458
PscI	ACATGT	1 cut(s)	317
PshBI	ATTAAT	2 cut(s)	77, 255
PspFI	CCCAGC	2 cut(s)	163, 392
PspPI	GGNCC	2 cut(s)	16, 323
PsuI	RGATCY	2 cut(s)	228, 397
RseI	CAYNNNNRTG	2 cut(s)	79, 513
SaqAI	TTAA	5 cut(s)	77, 255, 270, 312, 547
SatI	GCNGC	3 cut(s)	64, 354, 457
Sau3AI	GATC	2 cut(s)	228, 397
Sau96I	GGNCC	2 cut(s)	16, 323
SetI	ASST	4 cut(s)	25, 55, 73, 390
SfaNI	GCATC	1 cut(s)	512
SinI	GGWCC	2 cut(s)	16, 323
SmiMI	CAYNNNNRTG	2 cut(s)	79, 513
Sse9I	AATT	4 cut(s)	280, 300, 475, 518
SsiI	CCGC	3 cut(s)	66, 374, 456
SspMI	CTAG	1 cut(s)	285
StyI	CCWWGG	1 cut(s)	215
TaiI	ACGT	1 cut(s)	25
TaqI	TCGA	2 cut(s)	380, 536
TasI	AATT	4 cut(s)	280, 300, 475, 518
TauI	GCSGC	1 cut(s)	459
Tru1I	TTAA	5 cut(s)	77, 255, 270, 312, 547
Tru9I	TTAA	5 cut(s)	77, 255, 270, 312, 547
TseFI	GTSAC	1 cut(s)	480
TseI	GCWGC	2 cut(s)	63, 353
Tsp45I	GTSAC	1 cut(s)	480
TspDTI	ATGAA	3 cut(s)	63, 94, 229
Van91I	CCANNNNNTGG	1 cut(s)	177
VpaK11BI	GGWCC	2 cut(s)	16, 323
VspI	ATTAAT	2 cut(s)	77, 255
XceI	RCATGY	1 cut(s)	321
XcmI	CCANNNNNNNNNTGG	1 cut(s)	222
XmnI	GAANNNNTTC	1 cut(s)	475
XspI	CTAG	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.