Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0008605

Physical Location & Seq

Genomic Coordinates Forward (+)

16495085 .. 16495447

Gene Structure 363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g24680.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGACCAACGTGGTGGTGGTGGTGGTGATGGTGGAGGTGGAGGTGTCCGCGCAGGAGCATCATTCATATGGTTTATTTCTTGCTCCTTGTTCTTGTCTATAATGCTCGGAGGCGGGTGTCTTATAACCTATATAATCATTCCTCATGACCCAGGATCCATGTCCTGGCTTGCTATTACTGGAGTTGTATTGGTTTGTCTTCCATGGATGTTTTGGTTCTTCACATTCATATATCGTGTCGTTAGTCGGATGCGCAAGAATCGATCTAATTCTGAGGTCGTTGCCACACTGGGAAATGTTAACACAGTTGCTTCTATTGGTGGGAAGAATAATACCAATGCTGCTGGAACTACATTGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

121

Amino Acids

12.65

Weight (kDa)

9.41

Isoelectric Point (pI)

33.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008605)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30770
fragaria_vesca	FvH4_1g24680
malus_domestica	MD00G1091900.v1.1
prunus_persica	Prupe.4G274100_v2.0.a1
pyrus_communis	pycom01g00490
rosa_chinensis	RchiOBHm_Chr2g0122171
rosa_laevigata	RLG00000018657 RLG00000018660
rosa_multiflora	Rmu_sc0000805.1_g000013 Rmu_sc0004574.1_g000023
rosa_roxburghii	Rroxscaffold_2G00121940 Rroxscaffold_2G00121980
rosa_rugosa	Rorug02G0236700 Rorug02G0236800
rosa_samantha	Rh2AG293700 Rh2AG294400 Rh2BG303900 Rh2BG304000 Rh2CG282200 Rh2CG282300 Rh2DG317600 Rh2DG318200
rosa_wichuraiana	Rw2G023530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	125
Acc16I	TGCGCA	1 cut(s)	254
AccB7I	CCANNNNNTGG	1 cut(s)	165
AccII	CGCG	1 cut(s)	51
AciI	CCGC	2 cut(s)	49, 114
AclWI	GGATC	2 cut(s)	150, 163
AfiI	CCNNNNNNNGG	1 cut(s)	165
AjnI	CCWGG	2 cut(s)	151, 164
AluBI	AGCT	1 cut(s)	360
AluI	AGCT	1 cut(s)	360
AlwI	GGATC	2 cut(s)	150, 163
ApeKI	GCWGC	1 cut(s)	341
AspLEI	GCGC	2 cut(s)	53, 255
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	1 cut(s)	38
AvaII	GGWCC	1 cut(s)	4
BamHI	GGATCC	1 cut(s)	155
BbsI	GAAGAC	1 cut(s)	191
BbvI	GCAGC	1 cut(s)	328
BccI	CCATC	1 cut(s)	23
BciT130I	CCWGG	2 cut(s)	153, 166
BfaI	CTAG	1 cut(s)	361
BisI	GCNGC	1 cut(s)	342
BlsI	GCNGC	1 cut(s)	343
Bme1390I	CCNGG	2 cut(s)	153, 166
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	157
BmrFI	CCNGG	2 cut(s)	153, 166
BmrI	ACTGGG	1 cut(s)	299
BmsI	GCATC	2 cut(s)	68, 240
BmuI	ACTGGG	1 cut(s)	299
BpiI	GAAGAC	1 cut(s)	191
BpmI	CTGGAG	1 cut(s)	201
Bsa29I	ATCGAT	1 cut(s)	262
BsaJI	CCNNGG	2 cut(s)	151, 203
Bsc4I	CCNNNNNNNGG	1 cut(s)	165
Bse1I	ACTGG	2 cut(s)	184, 294
BseBI	CCWGG	2 cut(s)	153, 166
BseCI	ATCGAT	1 cut(s)	262
BseDI	CCNNGG	2 cut(s)	151, 203
BseGI	GGATG	2 cut(s)	213, 255
BseLI	CCNNNNNNNGG	1 cut(s)	165
BseMII	CTCAG	1 cut(s)	264
BseNI	ACTGG	2 cut(s)	184, 294
BseXI	GCAGC	1 cut(s)	328
Bsh1236I	CGCG	1 cut(s)	51
BshVI	ATCGAT	1 cut(s)	262
BslI	CCNNNNNNNGG	1 cut(s)	165
Bsp143I	GATC	2 cut(s)	155, 263
Bsp19I	CCATGG	1 cut(s)	203
BspACI	CCGC	2 cut(s)	49, 114
BspCNI	CTCAG	1 cut(s)	265
BspDI	ATCGAT	1 cut(s)	262
BspFNI	CGCG	1 cut(s)	51
BspHI	TCATGA	1 cut(s)	145
BspLI	GGNNCC	1 cut(s)	157
BspPI	GGATC	2 cut(s)	150, 163
BsrI	ACTGG	2 cut(s)	184, 294
BssECI	CCNNGG	2 cut(s)	151, 203
BssMI	GATC	2 cut(s)	155, 263
BssT1I	CCWWGG	1 cut(s)	203
Bst2UI	CCWGG	2 cut(s)	153, 166
Bst4CI	ACNGT	1 cut(s)	307
BstC8I	GCNNGC	1 cut(s)	171
BstDEI	CTNAG	1 cut(s)	273
BstDSI	CCRYGG	1 cut(s)	203
BstF5I	GGATG	2 cut(s)	213, 255
BstFNI	CGCG	1 cut(s)	51
BstHHI	GCGC	2 cut(s)	53, 255
BstKTI	GATC	2 cut(s)	158, 266
BstMBI	GATC	2 cut(s)	155, 263
BstNI	CCWGG	2 cut(s)	153, 166
BstSCI	CCNGG	2 cut(s)	151, 164
BstUI	CGCG	1 cut(s)	51
BstV1I	GCAGC	1 cut(s)	328
BstV2I	GAAGAC	1 cut(s)	191
BstX2I	RGATCY	1 cut(s)	155
BstXI	CCANNNNNNTGG	1 cut(s)	14
BstYI	RGATCY	1 cut(s)	155
Bsu15I	ATCGAT	1 cut(s)	262
BsuTUI	ATCGAT	1 cut(s)	262
BtgI	CCRYGG	1 cut(s)	203
BtsCI	GGATG	2 cut(s)	213, 255
BtsIMutI	CAGTG	1 cut(s)	287
Cac8I	GCNNGC	1 cut(s)	171
CciI	TCATGA	1 cut(s)	145
CfoI	GCGC	2 cut(s)	53, 255
Cfr13I	GGNCC	1 cut(s)	4
ClaI	ATCGAT	1 cut(s)	262
CviAII	CATG	3 cut(s)	146, 160, 204
CviJI	RGCY	2 cut(s)	169, 360
CviKI_1	RGCY	2 cut(s)	169, 360
DdeI	CTNAG	1 cut(s)	273
DpnI	GATC	2 cut(s)	157, 265
DpnII	GATC	2 cut(s)	155, 263
Eco130I	CCWWGG	1 cut(s)	203
Eco47I	GGWCC	1 cut(s)	4
EcoRII	CCWGG	2 cut(s)	151, 164
EcoT14I	CCWWGG	1 cut(s)	203
ErhI	CCWWGG	1 cut(s)	203
FaeI	CATG	3 cut(s)	149, 163, 207
FatI	CATG	3 cut(s)	145, 159, 203
FauI	CCCGC	1 cut(s)	107
FauNDI	CATATG	1 cut(s)	68
Fnu4HI	GCNGC	1 cut(s)	342
FokI	GGATG	2 cut(s)	220, 262
Fsp4HI	GCNGC	1 cut(s)	342
FspBI	CTAG	1 cut(s)	361
FspI	TGCGCA	1 cut(s)	254
GlaI	GCGC	2 cut(s)	52, 254
GluI	GCNGC	1 cut(s)	342
GsuI	CTGGAG	1 cut(s)	201
HhaI	GCGC	2 cut(s)	53, 255
Hin1II	CATG	3 cut(s)	149, 163, 207
Hin6I	GCGC	2 cut(s)	51, 253
HinP1I	GCGC	2 cut(s)	51, 253
HincII	GTYRAC	1 cut(s)	301
HindII	GTYRAC	1 cut(s)	301
HinfI	GANTC	1 cut(s)	259
HpaI	GTTAAC	1 cut(s)	301
HphI	GGTGA	1 cut(s)	38
Hpy166II	GTNNAC	1 cut(s)	301
Hpy188I	TCNGA	3 cut(s)	110, 249, 274
Hpy188III	TCNNGA	1 cut(s)	146
Hpy8I	GTNNAC	1 cut(s)	301
HpyCH4III	ACNGT	1 cut(s)	307
HpyCH4IV	ACGT	1 cut(s)	10
HpyF3I	CTNAG	1 cut(s)	273
HpySE526I	ACGT	1 cut(s)	10
Hsp92II	CATG	3 cut(s)	149, 163, 207
HspAI	GCGC	2 cut(s)	51, 253
KspAI	GTTAAC	1 cut(s)	301
Kzo9I	GATC	2 cut(s)	155, 263
LmnI	GCTCC	2 cut(s)	56, 89
LpnPI	CCDG	8 cut(s)	39, 138, 151, 165, 165, 178, 275, 330
Lsp1109I	GCAGC	1 cut(s)	328
LweI	GCATC	2 cut(s)	68, 240
MaeI	CTAG	1 cut(s)	361
MaeII	ACGT	1 cut(s)	10
MalI	GATC	2 cut(s)	157, 265
MboI	GATC	2 cut(s)	155, 263
MboII	GAAGA	3 cut(s)	191, 211, 337
MflI	RGATCY	1 cut(s)	155
MluCI	AATT	1 cut(s)	268
MmeI	TCCRAC	1 cut(s)	227
MnlI	CCTC	5 cut(s)	29, 35, 104, 153, 268
MseI	TTAA	1 cut(s)	300
MslI	CAYNNNNRTG	1 cut(s)	67
MspR9I	CCNGG	2 cut(s)	153, 166
MvaI	CCWGG	2 cut(s)	153, 166
MvnI	CGCG	1 cut(s)	51
NcoI	CCATGG	1 cut(s)	203
NdeI	CATATG	1 cut(s)	68
NdeII	GATC	2 cut(s)	155, 263
NlaIII	CATG	3 cut(s)	149, 163, 207
NlaIV	GGNNCC	1 cut(s)	157
NsbI	TGCGCA	1 cut(s)	254
PagI	TCATGA	1 cut(s)	145
PfeI	GAWTC	1 cut(s)	259
PflMI	CCANNNNNTGG	1 cut(s)	165
PkrI	GCNGC	1 cut(s)	343
PsiI	TTATAA	1 cut(s)	125
Psp6I	CCWGG	2 cut(s)	151, 164
PspGI	CCWGG	2 cut(s)	151, 164
PspN4I	GGNNCC	1 cut(s)	157
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	1 cut(s)	155
RseI	CAYNNNNRTG	1 cut(s)	67
SaqAI	TTAA	1 cut(s)	300
SatI	GCNGC	1 cut(s)	342
Sau3AI	GATC	2 cut(s)	155, 263
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	2 cut(s)	153, 166
SetI	ASST	6 cut(s)	13, 40, 46, 131, 279, 362
SfaNI	GCATC	2 cut(s)	68, 240
SinI	GGWCC	1 cut(s)	4
SmiMI	CAYNNNNRTG	1 cut(s)	67
Sse9I	AATT	1 cut(s)	268
SsiI	CCGC	2 cut(s)	49, 114
SspMI	CTAG	1 cut(s)	361
StyD4I	CCNGG	2 cut(s)	151, 164
StyI	CCWWGG	1 cut(s)	203
TaaI	ACNGT	1 cut(s)	307
TaiI	ACGT	1 cut(s)	13
TaqI	TCGA	1 cut(s)	262
TasI	AATT	1 cut(s)	268
TfiI	GAWTC	1 cut(s)	259
Tru1I	TTAA	1 cut(s)	300
Tru9I	TTAA	1 cut(s)	300
TscAI	CASTG	1 cut(s)	294
TseI	GCWGC	1 cut(s)	341
TspDTI	ATGAA	2 cut(s)	55, 217
TspRI	CASTG	1 cut(s)	294
Van91I	CCANNNNNTGG	1 cut(s)	165
VpaK11BI	GGWCC	1 cut(s)	4
XcmI	CCANNNNNNNNNTGG	2 cut(s)	14, 210
XspI	CTAG	1 cut(s)	361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.