Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0008605

Physical Location & Seq

Genomic Coordinates Forward (+)

39542979 .. 39543999

Gene Structure 1021 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG318200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGTTGTATGTGAGGACCAACGTGGTGGTGGAGGTGGAGGTGGAGGTGGAGGTGGAGGTGGAGATGGCCGTGGAGCTTCATTAATATGGTTTGTTACTTGCTTTTTATTCATATCTATAATGGCCGGAGGCGTATGCCTTTTGATGTATTTAATCATTCCTCATGACCCAGCAACGACCATGTCTTGGCTTCCTATTACTGGAGTTGCATTGATTTGCCTTCCATGGTTATTTTGGATCTTCACATTCATATATCGTATCATTACTCGGGTGTGCATTAAGAACTCTAATTCTAGTGGCATTGCAACAATTGCAAATATTAATACTGGTGGAAAGAATAATACTAACGCTGCAGATACATCTACGACGGCGGTGTCGAATGAGGTTGCTGGGGATCTAAAGATATCAGATGGTTATGTTCGTGGTGGTCTTGGGCATGGTGGACAACCAGCAGGAAGCGGCATTGCAAAGCGAAGTAATTCGTCACTAACCAATCAGAGCCTTGCATCTCATGAGAGTGAATTGCCTTTGGCCTCATCGGTGGTATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

183

Amino Acids

18.74

Weight (kDa)

6.8

Isoelectric Point (pI)

38.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008605)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30770
fragaria_vesca	FvH4_1g24680
malus_domestica	MD00G1091900.v1.1
prunus_persica	Prupe.4G274100_v2.0.a1
pyrus_communis	pycom01g00490
rosa_chinensis	RchiOBHm_Chr2g0122171
rosa_laevigata	RLG00000018657 RLG00000018660
rosa_multiflora	Rmu_sc0000805.1_g000013 Rmu_sc0004574.1_g000023
rosa_roxburghii	Rroxscaffold_2G00121940 Rroxscaffold_2G00121980
rosa_rugosa	Rorug02G0236700 Rorug02G0236800
rosa_samantha	Rh2AG293700 Rh2AG294400 Rh2BG303900 Rh2BG304000 Rh2CG282200 Rh2CG282300 Rh2DG317600 Rh2DG318200
rosa_wichuraiana	Rw2G023530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	373
AccB7I	CCANNNNNTGG	1 cut(s)	186
AciI	CCGC	2 cut(s)	371, 459
AclWI	GGATC	2 cut(s)	245, 402
AcoI	YGGCCR	2 cut(s)	67, 123
AfiI	CCNNNNNNNGG	2 cut(s)	186, 200
AluBI	AGCT	1 cut(s)	77
AluI	AGCT	1 cut(s)	77
AlwI	GGATC	2 cut(s)	245, 402
Ama87I	CYCGRG	1 cut(s)	267
AoxI	GGCC	3 cut(s)	67, 123, 531
ApeKI	GCWGC	1 cut(s)	350
AseI	ATTAAT	2 cut(s)	83, 321
Asp700I	GAANNNNTTC	1 cut(s)	478
AspS9I	GGNCC	1 cut(s)	16
AvaI	CYCGRG	1 cut(s)	267
AvaII	GGWCC	1 cut(s)	16
BbvI	GCAGC	1 cut(s)	337
BccI	CCATC	2 cut(s)	59, 404
BceAI	ACGGC	2 cut(s)	54, 384
BfaI	CTAG	1 cut(s)	294
BfmI	CTRYAG	1 cut(s)	351
BisI	GCNGC	2 cut(s)	351, 460
BlsI	GCNGC	2 cut(s)	352, 461
Bme18I	GGWCC	1 cut(s)	16
BmeT110I	CYCGRG	1 cut(s)	267
BmgT120I	GGNCC	1 cut(s)	16
BmsI	GCATC	1 cut(s)	515
BpmI	CTGGAG	1 cut(s)	222
BsaJI	CCNNGG	2 cut(s)	70, 224
Bsc4I	CCNNNNNNNGG	2 cut(s)	186, 200
Bse1I	ACTGG	2 cut(s)	205, 331
Bse3DI	GCAATG	2 cut(s)	300, 462
BseDI	CCNNGG	2 cut(s)	70, 224
BseLI	CCNNNNNNNGG	2 cut(s)	186, 200
BseMI	GCAATG	2 cut(s)	300, 462
BseNI	ACTGG	2 cut(s)	205, 331
BseXI	GCAGC	1 cut(s)	337
BseYI	CCCAGC	2 cut(s)	169, 389
BshFI	GGCC	3 cut(s)	69, 125, 533
BsiHKCI	CYCGRG	1 cut(s)	267
BsiSI	CCGG	1 cut(s)	126
BslI	CCNNNNNNNGG	2 cut(s)	186, 200
BsnI	GGCC	3 cut(s)	69, 125, 533
BsoBI	CYCGRG	1 cut(s)	267
Bsp143I	GATC	2 cut(s)	237, 394
Bsp19I	CCATGG	1 cut(s)	224
BspACI	CCGC	2 cut(s)	371, 459
BspANI	GGCC	3 cut(s)	69, 125, 533
BspHI	TCATGA	2 cut(s)	163, 511
BspMAI	CTGCAG	1 cut(s)	355
BspPI	GGATC	2 cut(s)	245, 402
BsrDI	GCAATG	2 cut(s)	300, 462
BsrI	ACTGG	2 cut(s)	205, 331
BssECI	CCNNGG	2 cut(s)	70, 224
BssMI	GATC	2 cut(s)	237, 394
BssT1I	CCWWGG	1 cut(s)	224
BstAPI	GCANNNNNTGC	1 cut(s)	311
BstDSI	CCRYGG	2 cut(s)	70, 224
BstKTI	GATC	2 cut(s)	240, 397
BstMBI	GATC	2 cut(s)	237, 394
BstMWI	GCNNNNNNNGC	1 cut(s)	311
BstSFI	CTRYAG	1 cut(s)	351
BstV1I	GCAGC	1 cut(s)	337
BstX2I	RGATCY	2 cut(s)	237, 394
BstXI	CCANNNNNNTGG	1 cut(s)	26
BstYI	RGATCY	2 cut(s)	237, 394
BsuRI	GGCC	3 cut(s)	69, 125, 533
BtgI	CCRYGG	2 cut(s)	70, 224
CciI	TCATGA	2 cut(s)	163, 511
Cfr13I	GGNCC	1 cut(s)	16
CviAII	CATG	5 cut(s)	164, 181, 225, 437, 512
CviJI	RGCY	6 cut(s)	69, 77, 125, 190, 501, 533
CviKI_1	RGCY	6 cut(s)	69, 77, 125, 190, 501, 533
DpnI	GATC	2 cut(s)	239, 396
DpnII	GATC	2 cut(s)	237, 394
DrdI	GACNNNNNNGTC	1 cut(s)	373
DseDI	GACNNNNNNGTC	1 cut(s)	373
EaeI	YGGCCR	2 cut(s)	67, 123
Eco130I	CCWWGG	1 cut(s)	224
Eco32I	GATATC	1 cut(s)	405
Eco47I	GGWCC	1 cut(s)	16
Eco88I	CYCGRG	1 cut(s)	267
EcoRV	GATATC	1 cut(s)	405
EcoT14I	CCWWGG	1 cut(s)	224
ErhI	CCWWGG	1 cut(s)	224
FaeI	CATG	5 cut(s)	167, 184, 228, 440, 515
FatI	CATG	5 cut(s)	163, 180, 224, 436, 511
Fnu4HI	GCNGC	2 cut(s)	351, 460
Fsp4HI	GCNGC	2 cut(s)	351, 460
FspBI	CTAG	1 cut(s)	294
GluI	GCNGC	2 cut(s)	351, 460
GsaI	CCCAGC	2 cut(s)	173, 393
GsuI	CTGGAG	1 cut(s)	222
HaeIII	GGCC	3 cut(s)	69, 125, 533
HapII	CCGG	1 cut(s)	126
Hin1II	CATG	5 cut(s)	167, 184, 228, 440, 515
HpaII	CCGG	1 cut(s)	126
Hpy166II	GTNNAC	1 cut(s)	443
Hpy188I	TCNGA	2 cut(s)	409, 498
Hpy188III	TCNNGA	2 cut(s)	164, 512
Hpy8I	GTNNAC	1 cut(s)	443
Hpy99I	CGWCG	1 cut(s)	370
HpyAV	CCTTC	1 cut(s)	230
HpyCH4IV	ACGT	1 cut(s)	22
HpyCH4V	TGCA	7 cut(s)	209, 276, 305, 314, 353, 467, 506
HpyF10VI	GCNNNNNNNGC	1 cut(s)	311
HpySE526I	ACGT	1 cut(s)	22
Hsp92II	CATG	5 cut(s)	167, 184, 228, 440, 515
Kzo9I	GATC	2 cut(s)	237, 394
LmnI	GCTCC	1 cut(s)	74
LpnPI	CCDG	7 cut(s)	139, 183, 186, 312, 375, 438, 462
Lsp1109I	GCAGC	1 cut(s)	337
LweI	GCATC	1 cut(s)	515
MaeI	CTAG	1 cut(s)	294
MaeII	ACGT	1 cut(s)	22
MaeIII	GTNAC	2 cut(s)	94, 483
MalI	GATC	2 cut(s)	239, 396
MboI	GATC	2 cut(s)	237, 394
MboII	GAAGA	1 cut(s)	232
MfeI	CAATTG	1 cut(s)	309
MflI	RGATCY	2 cut(s)	237, 394
MluCI	AATT	4 cut(s)	289, 309, 478, 521
MroXI	GAANNNNTTC	1 cut(s)	478
MseI	TTAA	5 cut(s)	83, 152, 279, 321, 550
MslI	CAYNNNNRTG	2 cut(s)	85, 516
MspI	CCGG	1 cut(s)	126
MunI	CAATTG	1 cut(s)	309
MwoI	GCNNNNNNNGC	1 cut(s)	311
NcoI	CCATGG	1 cut(s)	224
NdeII	GATC	2 cut(s)	237, 394
NlaIII	CATG	5 cut(s)	167, 184, 228, 440, 515
NmuCI	GTSAC	1 cut(s)	483
PagI	TCATGA	2 cut(s)	163, 511
PcsI	WCGNNNNNNNCGW	1 cut(s)	374
PdmI	GAANNNNTTC	1 cut(s)	478
PflFI	GACNNNGTC	1 cut(s)	181
PflMI	CCANNNNNTGG	1 cut(s)	186
PkrI	GCNGC	2 cut(s)	352, 461
PshBI	ATTAAT	2 cut(s)	83, 321
PspFI	CCCAGC	2 cut(s)	169, 389
PspPI	GGNCC	1 cut(s)	16
PstI	CTGCAG	1 cut(s)	355
PsuI	RGATCY	2 cut(s)	237, 394
PsyI	GACNNNGTC	1 cut(s)	181
RseI	CAYNNNNRTG	2 cut(s)	85, 516
SaqAI	TTAA	5 cut(s)	83, 152, 279, 321, 550
SatI	GCNGC	2 cut(s)	351, 460
Sau3AI	GATC	2 cut(s)	237, 394
Sau96I	GGNCC	1 cut(s)	16
SetI	ASST	8 cut(s)	25, 37, 43, 49, 55, 61, 79, 387
SfaNI	GCATC	1 cut(s)	515
SfcI	CTRYAG	1 cut(s)	351
SinI	GGWCC	1 cut(s)	16
SmiMI	CAYNNNNRTG	2 cut(s)	85, 516
Sse9I	AATT	4 cut(s)	289, 309, 478, 521
SsiI	CCGC	2 cut(s)	371, 459
SspI	AATATT	1 cut(s)	319
SspMI	CTAG	1 cut(s)	294
StyI	CCWWGG	1 cut(s)	224
TaiI	ACGT	1 cut(s)	25
TaqI	TCGA	1 cut(s)	377
TasI	AATT	4 cut(s)	289, 309, 478, 521
TauI	GCSGC	1 cut(s)	462
Tru1I	TTAA	5 cut(s)	83, 152, 279, 321, 550
Tru9I	TTAA	5 cut(s)	83, 152, 279, 321, 550
TseFI	GTSAC	1 cut(s)	483
TseI	GCWGC	1 cut(s)	350
Tsp45I	GTSAC	1 cut(s)	483
TspDTI	ATGAA	3 cut(s)	69, 100, 238
Tth111I	GACNNNGTC	1 cut(s)	181
Van91I	CCANNNNNTGG	1 cut(s)	186
VpaK11BI	GGWCC	1 cut(s)	16
VspI	ATTAAT	2 cut(s)	83, 321
XcmI	CCANNNNNNNNNTGG	2 cut(s)	26, 231
XmnI	GAANNNNTTC	1 cut(s)	478
XspI	CTAG	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.