Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0008605

Physical Location & Seq

Genomic Coordinates Forward (+)

35276757 .. 35277191

Gene Structure 435 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG304000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGCTGGAGGCGTATGCCTTTTGATGTATATAATCATTCCTCATGACCCGGCAACCATGTCTTGGCTTCCTATTACTGGAGTTGCATTGATTTGCCTTCCATGGTTATTTTGGATCTTCACGTCCATATATCGTATCATTACTCGGGTGTGCATTAAGAACTCTAATTCTAGTGGCATTGCAACAATTGCAAATGTTAATACAGGTGGTCCTGTTGGTGGAAAGAATAATACTAACGCTGCAAATACATCTACAACGGCGGTGTCGAATGAGGTTGCTGGGGATCTAAAGATATCAGATGGTTATGTTCGTGGTGGTCTTGGTGGACAACCAGCAGGAAGCGGCATTGCAAAGCGAAGTAATTCGTCACTAACCAATCAGAGCCTTGCATCTCATGAGAGTGAATTGCCTTTGGCCTCATCGATGGTATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

144

Amino Acids

14.88

Weight (kDa)

8.55

Isoelectric Point (pI)

36.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008605)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30770
fragaria_vesca	FvH4_1g24680
malus_domestica	MD00G1091900.v1.1
prunus_persica	Prupe.4G274100_v2.0.a1
pyrus_communis	pycom01g00490
rosa_chinensis	RchiOBHm_Chr2g0122171
rosa_laevigata	RLG00000018657 RLG00000018660
rosa_multiflora	Rmu_sc0000805.1_g000013 Rmu_sc0004574.1_g000023
rosa_roxburghii	Rroxscaffold_2G00121940 Rroxscaffold_2G00121980
rosa_rugosa	Rorug02G0236700 Rorug02G0236800
rosa_samantha	Rh2AG293700 Rh2AG294400 Rh2BG303900 Rh2BG304000 Rh2CG282200 Rh2CG282300 Rh2DG317600 Rh2DG318200
rosa_wichuraiana	Rw2G023530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	63
AciI	CCGC	2 cut(s)	260, 342
AclWI	GGATC	2 cut(s)	122, 291
AfiI	CCNNNNNNNGG	3 cut(s)	63, 77, 218
AjiI	CACGTC	1 cut(s)	123
AlwI	GGATC	2 cut(s)	122, 291
Ama87I	CYCGRG	1 cut(s)	144
AoxI	GGCC	1 cut(s)	414
ApeKI	GCWGC	1 cut(s)	239
Asp700I	GAANNNNTTC	1 cut(s)	361
AspS9I	GGNCC	1 cut(s)	209
AsuC2I	CCSGG	1 cut(s)	50
AvaI	CYCGRG	1 cut(s)	144
AvaII	GGWCC	1 cut(s)	209
BbvI	GCAGC	1 cut(s)	226
BccI	CCATC	2 cut(s)	293, 418
BceAI	ACGGC	1 cut(s)	273
BcnI	CCSGG	1 cut(s)	50
BfaI	CTAG	1 cut(s)	171
BisI	GCNGC	2 cut(s)	240, 343
BlsI	GCNGC	2 cut(s)	241, 344
Bme1390I	CCNGG	1 cut(s)	50
Bme18I	GGWCC	1 cut(s)	209
BmeT110I	CYCGRG	1 cut(s)	144
BmgBI	CACGTC	1 cut(s)	123
BmgT120I	GGNCC	1 cut(s)	209
BmrFI	CCNGG	1 cut(s)	50
BmsI	GCATC	1 cut(s)	398
BpmI	CTGGAG	2 cut(s)	27, 99
BpuMI	CCSGG	1 cut(s)	50
Bsa29I	ATCGAT	1 cut(s)	422
BsaJI	CCNNGG	1 cut(s)	101
Bsc4I	CCNNNNNNNGG	3 cut(s)	63, 77, 218
Bse1I	ACTGG	1 cut(s)	82
Bse3DI	GCAATG	2 cut(s)	177, 345
BseCI	ATCGAT	1 cut(s)	422
BseDI	CCNNGG	1 cut(s)	101
BseLI	CCNNNNNNNGG	3 cut(s)	63, 77, 218
BseMI	GCAATG	2 cut(s)	177, 345
BseNI	ACTGG	1 cut(s)	82
BseXI	GCAGC	1 cut(s)	226
BseYI	CCCAGC	1 cut(s)	278
BshFI	GGCC	1 cut(s)	416
BshVI	ATCGAT	1 cut(s)	422
BsiHKCI	CYCGRG	1 cut(s)	144
BsiSI	CCGG	1 cut(s)	50
BslI	CCNNNNNNNGG	3 cut(s)	63, 77, 218
BsnI	GGCC	1 cut(s)	416
BsoBI	CYCGRG	1 cut(s)	144
Bsp143I	GATC	2 cut(s)	114, 283
Bsp19I	CCATGG	1 cut(s)	101
BspACI	CCGC	2 cut(s)	260, 342
BspANI	GGCC	1 cut(s)	416
BspDI	ATCGAT	1 cut(s)	422
BspHI	TCATGA	2 cut(s)	43, 394
BspPI	GGATC	2 cut(s)	122, 291
BsrDI	GCAATG	2 cut(s)	177, 345
BsrI	ACTGG	1 cut(s)	82
BssECI	CCNNGG	1 cut(s)	101
BssMI	GATC	2 cut(s)	114, 283
BssT1I	CCWWGG	1 cut(s)	101
BstAPI	GCANNNNNTGC	1 cut(s)	188
BstDSI	CCRYGG	1 cut(s)	101
BstKTI	GATC	2 cut(s)	117, 286
BstMBI	GATC	2 cut(s)	114, 283
BstMWI	GCNNNNNNNGC	1 cut(s)	188
BstSCI	CCNGG	1 cut(s)	48
BstV1I	GCAGC	1 cut(s)	226
BstX2I	RGATCY	2 cut(s)	114, 283
BstYI	RGATCY	2 cut(s)	114, 283
Bsu15I	ATCGAT	1 cut(s)	422
BsuRI	GGCC	1 cut(s)	416
BsuTUI	ATCGAT	1 cut(s)	422
BtgI	CCRYGG	1 cut(s)	101
BtrI	CACGTC	1 cut(s)	123
CciI	TCATGA	2 cut(s)	43, 394
Cfr13I	GGNCC	1 cut(s)	209
ClaI	ATCGAT	1 cut(s)	422
CviAII	CATG	4 cut(s)	44, 58, 102, 395
CviJI	RGCY	4 cut(s)	5, 67, 384, 416
CviKI_1	RGCY	4 cut(s)	5, 67, 384, 416
DpnI	GATC	2 cut(s)	116, 285
DpnII	GATC	2 cut(s)	114, 283
Eco130I	CCWWGG	1 cut(s)	101
Eco32I	GATATC	1 cut(s)	294
Eco47I	GGWCC	1 cut(s)	209
Eco88I	CYCGRG	1 cut(s)	144
EcoRV	GATATC	1 cut(s)	294
EcoT14I	CCWWGG	1 cut(s)	101
ErhI	CCWWGG	1 cut(s)	101
FaeI	CATG	4 cut(s)	47, 61, 105, 398
FatI	CATG	4 cut(s)	43, 57, 101, 394
Fnu4HI	GCNGC	2 cut(s)	240, 343
Fsp4HI	GCNGC	2 cut(s)	240, 343
FspBI	CTAG	1 cut(s)	171
GluI	GCNGC	2 cut(s)	240, 343
GsaI	CCCAGC	1 cut(s)	282
GsuI	CTGGAG	2 cut(s)	27, 99
HaeIII	GGCC	1 cut(s)	416
HapII	CCGG	1 cut(s)	50
Hin1II	CATG	4 cut(s)	47, 61, 105, 398
HpaII	CCGG	1 cut(s)	50
Hpy166II	GTNNAC	1 cut(s)	326
Hpy188I	TCNGA	2 cut(s)	298, 381
Hpy188III	TCNNGA	2 cut(s)	44, 395
Hpy8I	GTNNAC	1 cut(s)	326
HpyAV	CCTTC	1 cut(s)	107
HpyCH4IV	ACGT	1 cut(s)	122
HpyCH4V	TGCA	7 cut(s)	86, 153, 182, 191, 242, 350, 389
HpyF10VI	GCNNNNNNNGC	1 cut(s)	188
HpySE526I	ACGT	1 cut(s)	122
Hsp92II	CATG	4 cut(s)	47, 61, 105, 398
Kzo9I	GATC	2 cut(s)	114, 283
LpnPI	CCDG	7 cut(s)	63, 63, 189, 225, 264, 321, 345
Lsp1109I	GCAGC	1 cut(s)	226
LweI	GCATC	1 cut(s)	398
MaeI	CTAG	1 cut(s)	171
MaeII	ACGT	1 cut(s)	122
MaeIII	GTNAC	1 cut(s)	366
MalI	GATC	2 cut(s)	116, 285
MboI	GATC	2 cut(s)	114, 283
MboII	GAAGA	1 cut(s)	109
MfeI	CAATTG	1 cut(s)	186
MflI	RGATCY	2 cut(s)	114, 283
MluCI	AATT	4 cut(s)	166, 186, 361, 404
MnlI	CCTC	3 cut(s)	51, 265, 427
MroXI	GAANNNNTTC	1 cut(s)	361
MseI	TTAA	3 cut(s)	156, 198, 433
MslI	CAYNNNNRTG	1 cut(s)	399
MspI	CCGG	1 cut(s)	50
MspR9I	CCNGG	1 cut(s)	50
MunI	CAATTG	1 cut(s)	186
MwoI	GCNNNNNNNGC	1 cut(s)	188
NciI	CCSGG	1 cut(s)	50
NcoI	CCATGG	1 cut(s)	101
NdeII	GATC	2 cut(s)	114, 283
NlaIII	CATG	4 cut(s)	47, 61, 105, 398
NmuCI	GTSAC	1 cut(s)	366
PagI	TCATGA	2 cut(s)	43, 394
PcsI	WCGNNNNNNNCGW	1 cut(s)	263
PdmI	GAANNNNTTC	1 cut(s)	361
PflMI	CCANNNNNTGG	1 cut(s)	63
PkrI	GCNGC	2 cut(s)	241, 344
PspFI	CCCAGC	1 cut(s)	278
PspPI	GGNCC	1 cut(s)	209
PsuI	RGATCY	2 cut(s)	114, 283
RseI	CAYNNNNRTG	1 cut(s)	399
SaqAI	TTAA	3 cut(s)	156, 198, 433
SatI	GCNGC	2 cut(s)	240, 343
Sau3AI	GATC	2 cut(s)	114, 283
Sau96I	GGNCC	1 cut(s)	209
ScrFI	CCNGG	1 cut(s)	50
SetI	ASST	3 cut(s)	125, 208, 276
SfaNI	GCATC	1 cut(s)	398
SinI	GGWCC	1 cut(s)	209
SmiMI	CAYNNNNRTG	1 cut(s)	399
Sse9I	AATT	4 cut(s)	166, 186, 361, 404
SsiI	CCGC	2 cut(s)	260, 342
SspMI	CTAG	1 cut(s)	171
StyD4I	CCNGG	1 cut(s)	48
StyI	CCWWGG	1 cut(s)	101
TaiI	ACGT	1 cut(s)	125
TaqI	TCGA	2 cut(s)	266, 422
TasI	AATT	4 cut(s)	166, 186, 361, 404
TauI	GCSGC	1 cut(s)	345
Tru1I	TTAA	3 cut(s)	156, 198, 433
Tru9I	TTAA	3 cut(s)	156, 198, 433
TseFI	GTSAC	1 cut(s)	366
TseI	GCWGC	1 cut(s)	239
Tsp45I	GTSAC	1 cut(s)	366
Van91I	CCANNNNNTGG	1 cut(s)	63
VpaK11BI	GGWCC	1 cut(s)	209
XcmI	CCANNNNNNNNNTGG	1 cut(s)	108
XmnI	GAANNNNTTC	1 cut(s)	361
XspI	CTAG	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.