Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0008605

Physical Location & Seq

Genomic Coordinates Forward (+)

34387205 .. 34388231

Gene Structure 1027 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G023530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGTTGTATGTGAGGACCAACGTGGTGGTGGAGGTGGAGGTGGAGATGGCAGCGGAGCTTCATTAATATGGTTTGTTACTTGCTTTTTATTCATATCCATAATGGCCGGAGGCGTATGCCTTTTGATGTATATAATCATTCCTCATGACCCAGCAACCATGTCTTGGCTTCCTATTACTGGAGTTGCATTGATTTGCCTTCCATGGTTATTTTGGATCTTCACGTTCATATATCGTATCATTACTCGGGTGTGCATTAAGAACTCTAATTCTAGTGGCATTGCAACACTTGCAAATGTTAATACAGGTGGTCCTGTTGGTGGAAAGAATAATACTAACGCTGCAAATACATCTACAACGGCGGTGTCGAATGAGGTTGCTGGGGATCTAAAGATATCAGATGGTTATGTTCGTGGTGGTCTTGGTGGACAACCAGCAGGAAGCGGCATTGCAAAGCGAAGTAATTCGTCACTAACCAATCAGAGCCTTGCATCTCATGAGAGTGAATTGCCTTTGGCCTCATCGATGGTATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

178

Amino Acids

18.36

Weight (kDa)

6.69

Isoelectric Point (pI)

35.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008605)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30770
fragaria_vesca	FvH4_1g24680
malus_domestica	MD00G1091900.v1.1
prunus_persica	Prupe.4G274100_v2.0.a1
pyrus_communis	pycom01g00490
rosa_chinensis	RchiOBHm_Chr2g0122171
rosa_laevigata	RLG00000018657 RLG00000018660
rosa_multiflora	Rmu_sc0000805.1_g000013 Rmu_sc0004574.1_g000023
rosa_roxburghii	Rroxscaffold_2G00121940 Rroxscaffold_2G00121980
rosa_rugosa	Rorug02G0236700 Rorug02G0236800
rosa_samantha	Rh2AG293700 Rh2AG294400 Rh2BG303900 Rh2BG304000 Rh2CG282200 Rh2CG282300 Rh2DG317600 Rh2DG318200
rosa_wichuraiana	Rw2G023530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	165
AciI	CCGC	3 cut(s)	54, 362, 444
AclWI	GGATC	2 cut(s)	224, 393
AcoI	YGGCCR	1 cut(s)	105
AfiI	CCNNNNNNNGG	3 cut(s)	165, 179, 320
AluBI	AGCT	1 cut(s)	59
AluI	AGCT	1 cut(s)	59
AlwI	GGATC	2 cut(s)	224, 393
Ama87I	CYCGRG	1 cut(s)	246
AoxI	GGCC	2 cut(s)	105, 516
ApeKI	GCWGC	2 cut(s)	51, 341
AseI	ATTAAT	1 cut(s)	65
Asp700I	GAANNNNTTC	1 cut(s)	463
AspS9I	GGNCC	2 cut(s)	16, 311
AvaI	CYCGRG	1 cut(s)	246
AvaII	GGWCC	2 cut(s)	16, 311
BbvI	GCAGC	2 cut(s)	63, 328
BccI	CCATC	3 cut(s)	41, 395, 520
BceAI	ACGGC	1 cut(s)	375
BfaI	CTAG	1 cut(s)	273
BisI	GCNGC	3 cut(s)	52, 342, 445
BlsI	GCNGC	3 cut(s)	53, 343, 446
Bme18I	GGWCC	2 cut(s)	16, 311
BmeT110I	CYCGRG	1 cut(s)	246
BmgT120I	GGNCC	2 cut(s)	16, 311
BmsI	GCATC	1 cut(s)	500
BpmI	CTGGAG	1 cut(s)	201
Bsa29I	ATCGAT	1 cut(s)	524
BsaJI	CCNNGG	1 cut(s)	203
Bsc4I	CCNNNNNNNGG	3 cut(s)	165, 179, 320
Bse1I	ACTGG	1 cut(s)	184
Bse3DI	GCAATG	2 cut(s)	279, 447
BseCI	ATCGAT	1 cut(s)	524
BseDI	CCNNGG	1 cut(s)	203
BseLI	CCNNNNNNNGG	3 cut(s)	165, 179, 320
BseMI	GCAATG	2 cut(s)	279, 447
BseNI	ACTGG	1 cut(s)	184
BseXI	GCAGC	2 cut(s)	63, 328
BseYI	CCCAGC	2 cut(s)	151, 380
BshFI	GGCC	2 cut(s)	107, 518
BshVI	ATCGAT	1 cut(s)	524
BsiHKCI	CYCGRG	1 cut(s)	246
BsiSI	CCGG	1 cut(s)	108
BslI	CCNNNNNNNGG	3 cut(s)	165, 179, 320
BsnI	GGCC	2 cut(s)	107, 518
BsoBI	CYCGRG	1 cut(s)	246
Bsp143I	GATC	2 cut(s)	216, 385
Bsp19I	CCATGG	1 cut(s)	203
BspACI	CCGC	3 cut(s)	54, 362, 444
BspANI	GGCC	2 cut(s)	107, 518
BspDI	ATCGAT	1 cut(s)	524
BspHI	TCATGA	2 cut(s)	145, 496
BspPI	GGATC	2 cut(s)	224, 393
BsrDI	GCAATG	2 cut(s)	279, 447
BsrI	ACTGG	1 cut(s)	184
BssECI	CCNNGG	1 cut(s)	203
BssMI	GATC	2 cut(s)	216, 385
BssT1I	CCWWGG	1 cut(s)	203
BstAPI	GCANNNNNTGC	1 cut(s)	290
BstDSI	CCRYGG	1 cut(s)	203
BstKTI	GATC	2 cut(s)	219, 388
BstMBI	GATC	2 cut(s)	216, 385
BstMWI	GCNNNNNNNGC	1 cut(s)	290
BstV1I	GCAGC	2 cut(s)	63, 328
BstX2I	RGATCY	2 cut(s)	216, 385
BstXI	CCANNNNNNTGG	1 cut(s)	26
BstYI	RGATCY	2 cut(s)	216, 385
Bsu15I	ATCGAT	1 cut(s)	524
BsuRI	GGCC	2 cut(s)	107, 518
BsuTUI	ATCGAT	1 cut(s)	524
BtgI	CCRYGG	1 cut(s)	203
CciI	TCATGA	2 cut(s)	145, 496
Cfr13I	GGNCC	2 cut(s)	16, 311
ClaI	ATCGAT	1 cut(s)	524
CviAII	CATG	4 cut(s)	146, 160, 204, 497
CviJI	RGCY	5 cut(s)	59, 107, 169, 486, 518
CviKI_1	RGCY	5 cut(s)	59, 107, 169, 486, 518
DpnI	GATC	2 cut(s)	218, 387
DpnII	GATC	2 cut(s)	216, 385
EaeI	YGGCCR	1 cut(s)	105
Eco130I	CCWWGG	1 cut(s)	203
Eco32I	GATATC	1 cut(s)	396
Eco47I	GGWCC	2 cut(s)	16, 311
Eco88I	CYCGRG	1 cut(s)	246
EcoRV	GATATC	1 cut(s)	396
EcoT14I	CCWWGG	1 cut(s)	203
ErhI	CCWWGG	1 cut(s)	203
FaeI	CATG	4 cut(s)	149, 163, 207, 500
FatI	CATG	4 cut(s)	145, 159, 203, 496
Fnu4HI	GCNGC	3 cut(s)	52, 342, 445
Fsp4HI	GCNGC	3 cut(s)	52, 342, 445
FspBI	CTAG	1 cut(s)	273
GluI	GCNGC	3 cut(s)	52, 342, 445
GsaI	CCCAGC	2 cut(s)	155, 384
GsuI	CTGGAG	1 cut(s)	201
HaeIII	GGCC	2 cut(s)	107, 518
HapII	CCGG	1 cut(s)	108
Hin1II	CATG	4 cut(s)	149, 163, 207, 500
HpaII	CCGG	1 cut(s)	108
Hpy166II	GTNNAC	1 cut(s)	428
Hpy188I	TCNGA	2 cut(s)	400, 483
Hpy188III	TCNNGA	2 cut(s)	146, 497
Hpy8I	GTNNAC	1 cut(s)	428
HpyAV	CCTTC	1 cut(s)	209
HpyCH4IV	ACGT	2 cut(s)	22, 224
HpyCH4V	TGCA	7 cut(s)	188, 255, 284, 293, 344, 452, 491
HpyF10VI	GCNNNNNNNGC	1 cut(s)	290
HpySE526I	ACGT	2 cut(s)	22, 224
Hsp92II	CATG	4 cut(s)	149, 163, 207, 500
Kzo9I	GATC	2 cut(s)	216, 385
LmnI	GCTCC	1 cut(s)	56
LpnPI	CCDG	8 cut(s)	121, 165, 165, 291, 327, 366, 423, 447
Lsp1109I	GCAGC	2 cut(s)	63, 328
LweI	GCATC	1 cut(s)	500
MaeI	CTAG	1 cut(s)	273
MaeII	ACGT	2 cut(s)	22, 224
MaeIII	GTNAC	2 cut(s)	76, 468
MalI	GATC	2 cut(s)	218, 387
MboI	GATC	2 cut(s)	216, 385
MboII	GAAGA	1 cut(s)	211
MflI	RGATCY	2 cut(s)	216, 385
MluCI	AATT	3 cut(s)	268, 463, 506
MnlI	CCTC	7 cut(s)	7, 26, 32, 104, 153, 367, 529
MroXI	GAANNNNTTC	1 cut(s)	463
MseI	TTAA	4 cut(s)	65, 258, 300, 535
MslI	CAYNNNNRTG	2 cut(s)	67, 501
MspA1I	CMGCKG	1 cut(s)	54
MspI	CCGG	1 cut(s)	108
MwoI	GCNNNNNNNGC	1 cut(s)	290
NcoI	CCATGG	1 cut(s)	203
NdeII	GATC	2 cut(s)	216, 385
NlaIII	CATG	4 cut(s)	149, 163, 207, 500
NmuCI	GTSAC	1 cut(s)	468
PagI	TCATGA	2 cut(s)	145, 496
PcsI	WCGNNNNNNNCGW	1 cut(s)	365
PdmI	GAANNNNTTC	1 cut(s)	463
PflMI	CCANNNNNTGG	1 cut(s)	165
PkrI	GCNGC	3 cut(s)	53, 343, 446
PshBI	ATTAAT	1 cut(s)	65
PspFI	CCCAGC	2 cut(s)	151, 380
PspPI	GGNCC	2 cut(s)	16, 311
PsuI	RGATCY	2 cut(s)	216, 385
RseI	CAYNNNNRTG	2 cut(s)	67, 501
SaqAI	TTAA	4 cut(s)	65, 258, 300, 535
SatI	GCNGC	3 cut(s)	52, 342, 445
Sau3AI	GATC	2 cut(s)	216, 385
Sau96I	GGNCC	2 cut(s)	16, 311
SetI	ASST	7 cut(s)	25, 37, 43, 61, 227, 310, 378
SfaNI	GCATC	1 cut(s)	500
SinI	GGWCC	2 cut(s)	16, 311
SmiMI	CAYNNNNRTG	2 cut(s)	67, 501
Sse9I	AATT	3 cut(s)	268, 463, 506
SsiI	CCGC	3 cut(s)	54, 362, 444
SspMI	CTAG	1 cut(s)	273
StyI	CCWWGG	1 cut(s)	203
TaiI	ACGT	2 cut(s)	25, 227
TaqI	TCGA	2 cut(s)	368, 524
TasI	AATT	3 cut(s)	268, 463, 506
TauI	GCSGC	1 cut(s)	447
Tru1I	TTAA	4 cut(s)	65, 258, 300, 535
Tru9I	TTAA	4 cut(s)	65, 258, 300, 535
TseFI	GTSAC	1 cut(s)	468
TseI	GCWGC	2 cut(s)	51, 341
Tsp45I	GTSAC	1 cut(s)	468
TspDTI	ATGAA	3 cut(s)	51, 82, 217
Van91I	CCANNNNNTGG	1 cut(s)	165
VpaK11BI	GGWCC	2 cut(s)	16, 311
VspI	ATTAAT	1 cut(s)	65
XcmI	CCANNNNNNNNNTGG	2 cut(s)	26, 210
XmnI	GAANNNNTTC	1 cut(s)	463
XspI	CTAG	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.