Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005579

Physical Location & Seq

Genomic Coordinates Reverse (-)

15176455 .. 15178849

Gene Structure 2395 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G31240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGGCAGTATCAGCTGATTACCAAGTTAAGTTTCCTGAAAGTGGTGATCTCTACTCTATACTAGCAGCTGAAGGGATTGAGTTTCTTTTGTCGCATAGTGGAGAGGTGCCGTTGGAATATATTCATGGTAAGACGATTTGTCTCTTCTTCTCTGCAATCTGGTGCAGGCCCTGCAAGGACTTCACTCCAGAGCTGATAAAACTCTACGAAAATCTTCAGAACCGAGGAGAAGAACTCGAGATCATCTTTGTCTCATTTGATCATGATATGACTTCATTCTATGAACATTTCTGGTGCATGCCATGGCTTGCAGTTCCCTTCAATTTAAGCCTACTCAACAAATTAAGGGACAAGTACGGAATTTCTCGTATCCCGTCACTGGTTCCTCTATATTCAGATGAAATCTCAGTCGCTGAAGATGTAATTGGTCTAATTGAAGACTATGGTTCTGAAGCCTTTCCTTTCACTAAAAAGCGAAAAGAAGAACTCAAAGCCATCGATGACTCCAAACGCCTTGGAGGACAGTTGGAGAAACTCCTTACTCACGAGTCCCGAAATTACGTTGTTGCCAGAAATGGAAGCAAGGTGCTAGTTTCTAAACTTGTGGGAAAGACCATAGGGTTGTACTTTGGTGCACACTGGTGTCCGCCTTTCCGATCTTTCACTTCTCAACTCGTAGATGTGTACAATGAGCTGGCGACTACAGATAAAGGCTCCTTTGAAGTCATCTTAATTTCAACAGACAGAGACTCAAGAGAGTTTAACATCAACATGACCAACATGCCATGGCTTGCAATACCTTATGAGGACAGAACAAGACAAGATCTTTGTAGAATCTTCAACGTCAAACTCATACCTGCATTGGTCATCATAGGACCCGAAGAGAAAACAGTGACCACAAACGCGAGAGAGATGGTATCATTGTATGGATCAAGGAGTTTTCCGTTCACGGAATCAAGGATTGTTGAGTTAAAAGCTTGTTTGAAGAAGGAAGGTGATTCACTTCCAAGGAAAGTGAAAGATAACAAGCATGAACACGAGCTAAAACTGGATATGGCGAAAGCTTATGTGTGTGATTTCTGTAAGAAGCAAGGCAGGTTTTGGGCGTTTTCTTGCAATGCTTGTGATTATGATCTTCATCCTACATGTGTGGAAGAAGAAGAAGCATTATTGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0042221 GO:0044424 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C1_2 Thioredoxin_8

Protein Analysis

392

Amino Acids

44.96

Weight (kDa)

5.45

Isoelectric Point (pI)

45.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin_8	PF13905	43 - 128	8e-21	Thioredoxin-like
Thioredoxin_8	PF13905	203 - 295	3e-20	Thioredoxin-like
C1_2	PF03107	343 - 384	2.4e-08	C1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005579)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31240 AT4G31240
fragaria_vesca	FvH4_2g36550 FvH4_2g36550 FvH4_2g36550 FvH4_2g36550
malus_domestica	MD08G1125400.v1.1 MD15G1105200.v1.1
prunus_persica	Prupe.1G457000_v2.0.a1 Prupe.1G457000_v2.0.a1 Prupe.1G457000_v2.0.a1 Prupe.1G457000_v2.0.a1 Prupe.1G457000_v2.0.a1
pyrus_communis	pycom08g10440
rosa_chinensis	RchiOBHm_Chr6g0305301
rosa_laevigata	RLG00000010903
rosa_multiflora	Rmu_ssc0000148.1_g000001
rosa_roxburghii	Rroxscaffold_7G00162920
rosa_rugosa	Rorug06G0339300 Rorug06G0339500
rosa_samantha	Rh6AG451000 Rh6BG450300 Rh6BG450600 Rh6CG464900 Rh6CG465300 Rh6DG451500 Rh6DG451800
rosa_wichuraiana	Rw6G039310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	865, 1086
AccB1I	GGYRCC	1 cut(s)	106
AccII	CGCG	1 cut(s)	905
AciI	CCGC	1 cut(s)	647
AclWI	GGATC	1 cut(s)	937
AcsI	RAATTY	1 cut(s)	360
AcuI	CTGAAG	4 cut(s)	90, 200, 435, 471
AfaI	GTAC	3 cut(s)	356, 626, 686
AfiI	CCNNNNNNNGG	2 cut(s)	41, 379
AflIII	ACRYGT	1 cut(s)	1145
AgsI	TTSAA	6 cut(s)	322, 437, 722, 738, 841, 985
AhdI	GACNNNNNGTC	1 cut(s)	138
AjuI	GAANNNNNNNTTGG	4 cut(s)	15, 47, 408, 440
AleI	CACNNNNGTG	1 cut(s)	640
AluBI	AGCT	7 cut(s)	14, 68, 193, 694, 977, 1042, 1064
AluI	AGCT	7 cut(s)	14, 68, 193, 694, 977, 1042, 1064
Alw21I	GWGCWC	1 cut(s)	637
Alw26I	GTCTC	3 cut(s)	146, 256, 741
Alw44I	GTGCAC	1 cut(s)	633
AlwI	GGATC	1 cut(s)	937
AlwNI	CAGNNNCTG	2 cut(s)	171, 413
Ama87I	CYCGRG	1 cut(s)	236
AoxI	GGCC	1 cut(s)	167
ApaLI	GTGCAC	1 cut(s)	633
ApeKI	GCWGC	1 cut(s)	65
ApoI	RAATTY	1 cut(s)	360
ArsI	GACNNNNNNTTYG	2 cut(s)	810, 842
Asp700I	GAANNNNTTC	3 cut(s)	120, 213, 456
AspS9I	GGNCC	2 cut(s)	168, 875
AsuHPI	GGTGA	2 cut(s)	56, 1007
AvaI	CYCGRG	1 cut(s)	236
AvaII	GGWCC	1 cut(s)	875
BaeGI	GKGCMC	1 cut(s)	637
BanI	GGYRCC	1 cut(s)	106
BauI	CACGAG	2 cut(s)	545, 1037
BbsI	GAAGAC	1 cut(s)	444
Bbv12I	GWGCWC	1 cut(s)	637
BbvI	GCAGC	1 cut(s)	77
BccI	CCATC	2 cut(s)	503, 907
BceAI	ACGGC	1 cut(s)	94
BciVI	GTATCC	1 cut(s)	380
BclI	TGATCA	1 cut(s)	259
BcoDI	GTCTC	3 cut(s)	146, 256, 741
BfaI	CTAG	2 cut(s)	62, 590
BfmI	CTRYAG	1 cut(s)	702
BfuAI	ACCTGC	2 cut(s)	865, 1086
BfuI	GTATCC	1 cut(s)	380
BglII	AGATCT	1 cut(s)	823
BisI	GCNGC	1 cut(s)	66
BlsI	GCNGC	1 cut(s)	67
Bme18I	GGWCC	1 cut(s)	875
BmeRI	GACNNNNNGTC	1 cut(s)	138
BmeT110I	CYCGRG	1 cut(s)	236
BmgT120I	GGNCC	2 cut(s)	168, 875
BmiI	GGNNCC	4 cut(s)	108, 384, 715, 877
BpiI	GAAGAC	1 cut(s)	444
BplI	GAGNNNNNCTC	2 cut(s)	219, 251
BpmI	CTGGAG	1 cut(s)	171
BpuEI	CTTGAG	1 cut(s)	736
Bsa29I	ATCGAT	1 cut(s)	498
BsaBI	GATNNNNATC	2 cut(s)	1131, 1137
BsaJI	CCNNGG	5 cut(s)	223, 302, 514, 785, 1007
Bsc4I	CCNNNNNNNGG	2 cut(s)	41, 379
Bse1I	ACTGG	3 cut(s)	384, 644, 1053
Bse3DI	GCAATG	1 cut(s)	1123
Bse8I	GATNNNNATC	2 cut(s)	1131, 1137
BseCI	ATCGAT	1 cut(s)	498
BseDI	CCNNGG	5 cut(s)	223, 302, 514, 785, 1007
BseGI	GGATG	1 cut(s)	1138
BseJI	GATNNNNATC	2 cut(s)	1131, 1137
BseLI	CCNNNNNNNGG	2 cut(s)	41, 379
BseMI	GCAATG	1 cut(s)	1123
BseMII	CTCAG	1 cut(s)	420
BseNI	ACTGG	3 cut(s)	384, 644, 1053
BseRI	GAGGAG	1 cut(s)	240
BseSI	GKGCMC	1 cut(s)	637
BseXI	GCAGC	1 cut(s)	77
BsgI	GTGCAG	1 cut(s)	184
Bsh1236I	CGCG	1 cut(s)	905
BshFI	GGCC	1 cut(s)	169
BshNI	GGYRCC	1 cut(s)	106
BshVI	ATCGAT	1 cut(s)	498
BsiHKAI	GWGCWC	1 cut(s)	637
BsiHKCI	CYCGRG	1 cut(s)	236
BslFI	GGGAC	2 cut(s)	362, 535
BslI	CCNNNNNNNGG	2 cut(s)	41, 379
BsmAI	GTCTC	3 cut(s)	146, 256, 741
BsmFI	GGGAC	2 cut(s)	362, 535
BsnI	GGCC	1 cut(s)	169
BsoBI	CYCGRG	1 cut(s)	236
Bsp1286I	GDGCHC	1 cut(s)	637
Bsp1407I	TGTACA	1 cut(s)	684
Bsp143I	GATC	7 cut(s)	46, 240, 259, 656, 823, 929, 1132
Bsp19I	CCATGG	2 cut(s)	302, 785
BspACI	CCGC	1 cut(s)	647
BspANI	GGCC	1 cut(s)	169
BspCNI	CTCAG	1 cut(s)	419
BspDI	ATCGAT	1 cut(s)	498
BspFNI	CGCG	1 cut(s)	905
BspHI	TCATGA	1 cut(s)	262
BspLI	GGNNCC	4 cut(s)	108, 384, 715, 877
BspMI	ACCTGC	2 cut(s)	865, 1086
BspPI	GGATC	1 cut(s)	937
BspT107I	GGYRCC	1 cut(s)	106
BsrDI	GCAATG	1 cut(s)	1123
BsrGI	TGTACA	1 cut(s)	684
BsrI	ACTGG	3 cut(s)	384, 644, 1053
BssECI	CCNNGG	5 cut(s)	223, 302, 514, 785, 1007
BssMI	GATC	7 cut(s)	46, 240, 259, 656, 823, 929, 1132
BssSI	CACGAG	2 cut(s)	545, 1037
BssT1I	CCWWGG	4 cut(s)	302, 514, 785, 1007
Bst2BI	CACGAG	2 cut(s)	545, 1037
Bst4CI	ACNGT	2 cut(s)	525, 892
Bst6I	CTCTTC	2 cut(s)	149, 876
BstAPI	GCANNNNNTGC	1 cut(s)	171
BstAUI	TGTACA	1 cut(s)	684
BstC8I	GCNNGC	5 cut(s)	167, 299, 309, 696, 792
BstDEI	CTNAG	1 cut(s)	406
BstDSI	CCRYGG	2 cut(s)	302, 785
BstF5I	GGATG	1 cut(s)	1138
BstFNI	CGCG	1 cut(s)	905
BstKTI	GATC	7 cut(s)	49, 243, 262, 659, 826, 932, 1135
BstMAI	GTCTC	3 cut(s)	146, 256, 741
BstMBI	GATC	7 cut(s)	46, 240, 259, 656, 823, 929, 1132
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 171
BstNSI	RCATGY	3 cut(s)	301, 784, 1149
BstSFI	CTRYAG	1 cut(s)	702
BstSLI	GKGCMC	1 cut(s)	637
BstUI	CGCG	1 cut(s)	905
BstV1I	GCAGC	1 cut(s)	77
BstV2I	GAAGAC	1 cut(s)	444
BstX2I	RGATCY	1 cut(s)	823
BstYI	RGATCY	1 cut(s)	823
Bsu15I	ATCGAT	1 cut(s)	498
BsuI	GTATCC	1 cut(s)	380
BsuRI	GGCC	1 cut(s)	169
BsuTUI	ATCGAT	1 cut(s)	498
BtgI	CCRYGG	2 cut(s)	302, 785
BtsCI	GGATG	1 cut(s)	1138
BtsIMutI	CAGTG	3 cut(s)	377, 637, 897
BveI	ACCTGC	2 cut(s)	865, 1086
Cac8I	GCNNGC	5 cut(s)	167, 299, 309, 696, 792
CaiI	CAGNNNCTG	2 cut(s)	171, 413
CciI	TCATGA	1 cut(s)	262
Cfr13I	GGNCC	2 cut(s)	168, 875
ClaI	ATCGAT	1 cut(s)	498
Csp6I	GTAC	3 cut(s)	355, 625, 685
CviAII	CATG	9 cut(s)	125, 263, 298, 303, 772, 781, 786, 1031, 1146
CviQI	GTAC	3 cut(s)	355, 625, 685
DdeI	CTNAG	1 cut(s)	406
DpnI	GATC	7 cut(s)	48, 242, 261, 658, 825, 931, 1134
DpnII	GATC	7 cut(s)	46, 240, 259, 656, 823, 929, 1132
DriI	GACNNNNNGTC	1 cut(s)	138
Eam1104I	CTCTTC	2 cut(s)	149, 876
Eam1105I	GACNNNNNGTC	1 cut(s)	138
EarI	CTCTTC	2 cut(s)	149, 876
EciI	GGCGGA	1 cut(s)	636
Eco130I	CCWWGG	4 cut(s)	302, 514, 785, 1007
Eco47I	GGWCC	1 cut(s)	875
Eco57I	CTGAAG	4 cut(s)	90, 200, 435, 471
Eco88I	CYCGRG	1 cut(s)	236
EcoO109I	RGGNCCY	2 cut(s)	168, 875
EcoT14I	CCWWGG	4 cut(s)	302, 514, 785, 1007
ErhI	CCWWGG	4 cut(s)	302, 514, 785, 1007
FaeI	CATG	9 cut(s)	128, 266, 301, 306, 775, 784, 789, 1034, 1149
FaqI	GGGAC	2 cut(s)	362, 535
FatI	CATG	9 cut(s)	124, 262, 297, 302, 771, 780, 785, 1030, 1145
FbaI	TGATCA	1 cut(s)	259
Fnu4HI	GCNGC	1 cut(s)	66
FokI	GGATG	1 cut(s)	1125
Fsp4HI	GCNGC	1 cut(s)	66
FspBI	CTAG	2 cut(s)	62, 590
GluI	GCNGC	1 cut(s)	66
GsuI	CTGGAG	1 cut(s)	171
HaeIII	GGCC	1 cut(s)	169
Hin1II	CATG	9 cut(s)	128, 266, 301, 306, 775, 784, 789, 1034, 1149
HindIII	AAGCTT	2 cut(s)	975, 1062
HinfI	GANTC	6 cut(s)	503, 548, 749, 834, 953, 998
HphI	GGTGA	2 cut(s)	56, 1007
Hpy166II	GTNNAC	3 cut(s)	635, 685, 948
Hpy188I	TCNGA	4 cut(s)	219, 397, 451, 656
Hpy188III	TCNNGA	7 cut(s)	35, 188, 238, 263, 545, 552, 753
Hpy8I	GTNNAC	3 cut(s)	635, 685, 948
HpyAV	CCTTC	4 cut(s)	65, 328, 982, 986
HpyCH4III	ACNGT	2 cut(s)	525, 892
HpyCH4IV	ACGT	2 cut(s)	561, 843
HpyCH4V	TGCA	9 cut(s)	155, 165, 174, 297, 311, 635, 794, 860, 1116
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 171
HpyF3I	CTNAG	1 cut(s)	406
HpySE526I	ACGT	2 cut(s)	561, 843
Hsp92II	CATG	9 cut(s)	128, 266, 301, 306, 775, 784, 789, 1034, 1149
Ksp22I	TGATCA	1 cut(s)	259
Kzo9I	GATC	7 cut(s)	46, 240, 259, 656, 823, 929, 1132
LmnI	GCTCC	1 cut(s)	719
Lsp1109I	GCAGC	1 cut(s)	77
MaeI	CTAG	2 cut(s)	62, 590
MaeII	ACGT	2 cut(s)	561, 843
MaeIII	GTNAC	2 cut(s)	375, 892
MalI	GATC	7 cut(s)	48, 242, 261, 658, 825, 931, 1134
MboI	GATC	7 cut(s)	46, 240, 259, 656, 823, 929, 1132
MflI	RGATCY	1 cut(s)	823
MhlI	GDGCHC	1 cut(s)	637
MluCI	AATT	7 cut(s)	322, 341, 360, 423, 432, 556, 732
MlyI	GAGTC	3 cut(s)	497, 557, 743
MmeI	TCCRAC	2 cut(s)	93, 507
MnlI	CCTC	5 cut(s)	97, 218, 396, 512, 799
MroXI	GAANNNNTTC	3 cut(s)	120, 213, 456
MseI	TTAA	6 cut(s)	27, 326, 344, 731, 762, 971
MslI	CAYNNNNRTG	2 cut(s)	640, 770
MspA1I	CMGCKG	2 cut(s)	14, 68
MvnI	CGCG	1 cut(s)	905
MwoI	GCNNNNNNNGC	2 cut(s)	11, 171
NcoI	CCATGG	2 cut(s)	302, 785
NdeII	GATC	7 cut(s)	46, 240, 259, 656, 823, 929, 1132
NlaIII	CATG	9 cut(s)	128, 266, 301, 306, 775, 784, 789, 1034, 1149
NlaIV	GGNNCC	4 cut(s)	108, 384, 715, 877
NmuCI	GTSAC	2 cut(s)	375, 892
NspI	RCATGY	3 cut(s)	301, 784, 1149
OliI	CACNNNNGTG	1 cut(s)	640
PaeI	GCATGC	1 cut(s)	301
PaeR7I	CTCGAG	1 cut(s)	236
PagI	TCATGA	1 cut(s)	262
PciI	ACATGT	1 cut(s)	1145
PdmI	GAANNNNTTC	3 cut(s)	120, 213, 456
PfeI	GAWTC	3 cut(s)	834, 953, 998
PkrI	GCNGC	1 cut(s)	67
PleI	GAGTC	3 cut(s)	497, 556, 743
PpsI	GAGTC	3 cut(s)	497, 556, 743
PpuMI	RGGWCCY	1 cut(s)	875
PscI	ACATGT	1 cut(s)	1145
Psp5II	RGGWCCY	1 cut(s)	875
PspN4I	GGNNCC	4 cut(s)	108, 384, 715, 877
PspPI	GGNCC	2 cut(s)	168, 875
PspPPI	RGGWCCY	1 cut(s)	875
PstNI	CAGNNNCTG	2 cut(s)	171, 413
PsuI	RGATCY	1 cut(s)	823
PvuII	CAGCTG	2 cut(s)	14, 68
RsaI	GTAC	3 cut(s)	356, 626, 686
RsaNI	GTAC	3 cut(s)	355, 625, 685
RseI	CAYNNNNRTG	2 cut(s)	640, 770
SaqAI	TTAA	6 cut(s)	27, 326, 344, 731, 762, 971
SatI	GCNGC	1 cut(s)	66
Sau3AI	GATC	7 cut(s)	46, 240, 259, 656, 823, 929, 1132
Sau96I	GGNCC	2 cut(s)	168, 875
SchI	GAGTC	3 cut(s)	497, 557, 743
SduI	GDGCHC	1 cut(s)	637
SfcI	CTRYAG	1 cut(s)	702
Sfr274I	CTCGAG	1 cut(s)	236
SinI	GGWCC	1 cut(s)	875
SlaI	CTCGAG	1 cut(s)	236
SmiMI	CAYNNNNRTG	2 cut(s)	640, 770
SmlI	CTYRAG	2 cut(s)	236, 751
SmoI	CTYRAG	2 cut(s)	236, 751
SphI	GCATGC	1 cut(s)	301
Sse9I	AATT	7 cut(s)	322, 341, 360, 423, 432, 556, 732
SsiI	CCGC	1 cut(s)	647
SspMI	CTAG	2 cut(s)	62, 590
StyI	CCWWGG	4 cut(s)	302, 514, 785, 1007
TaaI	ACNGT	2 cut(s)	525, 892
TaiI	ACGT	2 cut(s)	564, 846
TaqI	TCGA	2 cut(s)	237, 498
TasI	AATT	7 cut(s)	322, 341, 360, 423, 432, 556, 732
TatI	WGTACW	2 cut(s)	624, 684
TfiI	GAWTC	3 cut(s)	834, 953, 998
Tru1I	TTAA	6 cut(s)	27, 326, 344, 731, 762, 971
Tru9I	TTAA	6 cut(s)	27, 326, 344, 731, 762, 971
TscAI	CASTG	3 cut(s)	384, 644, 897
TseFI	GTSAC	2 cut(s)	375, 892
TseI	GCWGC	1 cut(s)	65
Tsp45I	GTSAC	2 cut(s)	375, 892
TspDTI	ATGAA	6 cut(s)	113, 264, 297, 414, 1047, 1127
TspGWI	ACGGA	3 cut(s)	372, 933, 965
TspRI	CASTG	3 cut(s)	384, 644, 897
VneI	GTGCAC	1 cut(s)	633
VpaK11BI	GGWCC	1 cut(s)	875
XapI	RAATTY	1 cut(s)	360
XceI	RCATGY	3 cut(s)	301, 784, 1149
XhoI	CTCGAG	1 cut(s)	236
XmnI	GAANNNNTTC	3 cut(s)	120, 213, 456
XspI	CTAG	2 cut(s)	62, 590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.