Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0005579

Physical Location & Seq

Genomic Coordinates Reverse (-)

63338702 .. 63340132

Gene Structure 1431 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G039310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGATAGCACCAACATAGTAACCGTCCTGGAATCCGAAGGAGTTGAGTTCCTTCTATCTGGTGAAAGAAAGGTACCCTTGTCATCATGCAATGGGAAGACAGTATGCCTCCTCTTCTCTGCAAATTGGTGTAGGCCTTGCAAGGCTCTGACTCCTCAGCTTGTGAGACTTTATGATACCCTTAGATATGATGGCAAAGATCTTGAGATTATTTTGGTCTCCTTCGACCCCGACGAGGACAAATTCAATGAACACTTCAAGTGCATGCCATGGCTGGCAGTCCCATTCGATGTAAACCTGCATAAAAGATTGAGTGACATATACCATGTTGATCGGATCCCATCACTTGTTCCATTGAGTTCAGATGGGATATCAATTGAGGAAGATTTGATTGGACTTATTGAAGACTATGGTGCTGAGGCATTTCCGTTCACTAGGAAGAGAAGAGAGGAATTAAGGGCAATAGATGATGCAAAGCGTGATGGTGGAAAACTTGAAGAGCTTCTGGCACATCAAGGAAGAAACTATCTCATGTCTAGGGATGGTAGAGAGGTATATATACATATCAGTATCCGAACTTGTTGGCAAAACCATAGGCCTTACTTTGGTGCACACTGGAGTCCTCCTTGCCGTGCTTTCACTTCCAAGCTCATAGAAGCGTACAGTGAGCTTACGACATCCAACGATGAATTCTTTGAAATCATTTTCGTCTCCACAGATCGAGACCTCAAAGAATTCGAACTAAACATATGCACCATGCCATGGCTTGCCATCCCCTACCATGATAAAACAAGACAAGACCTTTGCCGAATCTTTAACATTAAAGAGATTCCGGCTTTGGTTCTAATTGGACCAGATGGGAAGGCTGTTAGCACAAAGGGGAGGGCTTTGATCTCTTTGTATGGCGCAAAAGCTTTTCCATTTACAGAGTTGAGGATCAAAGAGCTTGAAGCAGCCTTGGTAAAAGAAAGAGAGGGATTGCCTCCTCAAGTGAAGGATATAAAGCATGACCATATGCTGAAGTTGGACATGGCCAAAGCATATGTATGTGATTTTTGCAAGAAGCAAGGGAGGTTCTGGGCATTTTCGTGTGATGTTTGTGACTATGACCTTCATCCAACTTGCGTAGATAAGTCATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0042221 GO:0044424 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C1_2 Thioredoxin_8

Protein Analysis

380

Amino Acids

43.7

Weight (kDa)

5.73

Isoelectric Point (pI)

47.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AhpC-TSA	PF00578	23 - 91	2.3e-06	AhpC/TSA family
Thioredoxin_8	PF13905	32 - 123	1e-20	Thioredoxin-like
Thioredoxin_8	PF13905	201 - 288	2e-22	Thioredoxin-like
C1_2	PF03107	335 - 376	1.6e-08	C1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005579)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31240 AT4G31240
fragaria_vesca	FvH4_2g36550 FvH4_2g36550 FvH4_2g36550 FvH4_2g36550
malus_domestica	MD08G1125400.v1.1 MD15G1105200.v1.1
prunus_persica	Prupe.1G457000_v2.0.a1 Prupe.1G457000_v2.0.a1 Prupe.1G457000_v2.0.a1 Prupe.1G457000_v2.0.a1 Prupe.1G457000_v2.0.a1
pyrus_communis	pycom08g10440
rosa_chinensis	RchiOBHm_Chr6g0305301
rosa_laevigata	RLG00000010903
rosa_multiflora	Rmu_ssc0000148.1_g000001
rosa_roxburghii	Rroxscaffold_7G00162920
rosa_rugosa	Rorug06G0339300 Rorug06G0339500
rosa_samantha	Rh6AG451000 Rh6BG450300 Rh6BG450600 Rh6CG464900 Rh6CG465300 Rh6DG451500 Rh6DG451800
rosa_wichuraiana	Rw6G039310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	306
Acc65I	GGTACC	1 cut(s)	73
AccB1I	GGYRCC	1 cut(s)	73
AccB7I	CCANNNNNTGG	1 cut(s)	762
AclWI	GGATC	3 cut(s)	331, 344, 944
AcoI	YGGCCR	1 cut(s)	1032
AcsI	RAATTY	3 cut(s)	242, 689, 734
AcuI	CTGAAG	1 cut(s)	1040
AfaI	GTAC	2 cut(s)	75, 662
AfiI	CCNNNNNNNGG	3 cut(s)	235, 605, 762
AgsI	TTSAA	6 cut(s)	247, 259, 404, 497, 698, 950
AjnI	CCWGG	1 cut(s)	27
AjuI	GAANNNNNNNTTGG	4 cut(s)	375, 407, 674, 706
AluBI	AGCT	6 cut(s)	160, 502, 649, 670, 914, 946
AluI	AGCT	6 cut(s)	160, 502, 649, 670, 914, 946
Alw21I	GWGCWC	1 cut(s)	613
Alw26I	GTCTC	4 cut(s)	160, 223, 715, 717
Alw44I	GTGCAC	1 cut(s)	609
AlwI	GGATC	3 cut(s)	331, 344, 944
AoxI	GGCC	3 cut(s)	134, 596, 1032
ApaLI	GTGCAC	1 cut(s)	609
ApeKI	GCWGC	1 cut(s)	953
ApoI	RAATTY	3 cut(s)	242, 689, 734
ArsI	GACNNNNNNTTYG	2 cut(s)	786, 818
Asp700I	GAANNNNTTC	1 cut(s)	501
Asp718I	GGTACC	1 cut(s)	73
AspLEI	GCGC	1 cut(s)	908
AspS9I	GGNCC	1 cut(s)	851
AsuHPI	GGTGA	1 cut(s)	74
AsuII	TTCGAA	1 cut(s)	738
AvaII	GGWCC	1 cut(s)	851
BaeGI	GKGCMC	1 cut(s)	613
BaeI	ACNNNNGTAYC	2 cut(s)	65, 98
BalI	TGGCCA	1 cut(s)	1034
BamHI	GGATCC	1 cut(s)	336
BanI	GGYRCC	1 cut(s)	73
BbsI	GAAGAC	2 cut(s)	104, 411
Bbv12I	GWGCWC	1 cut(s)	613
BbvCI	CCTCAGC	2 cut(s)	156, 417
BbvI	GCAGC	1 cut(s)	965
BccI	CCATC	7 cut(s)	185, 349, 359, 476, 536, 779, 851
BceAI	ACGGC	1 cut(s)	615
BciT130I	CCWGG	1 cut(s)	29
BciVI	GTATCC	1 cut(s)	581
BcoDI	GTCTC	4 cut(s)	160, 223, 715, 717
BfaI	CTAG	2 cut(s)	435, 537
BfuAI	ACCTGC	1 cut(s)	306
BfuI	GTATCC	1 cut(s)	581
BglII	AGATCT	1 cut(s)	199
BisI	GCNGC	1 cut(s)	954
BlsI	GCNGC	1 cut(s)	955
Bme1390I	CCNGG	1 cut(s)	29
Bme18I	GGWCC	1 cut(s)	851
BmgT120I	GGNCC	1 cut(s)	851
BmiI	GGNNCC	2 cut(s)	75, 338
BmrFI	CCNGG	1 cut(s)	29
BmsI	GCATC	1 cut(s)	460
BpiI	GAAGAC	2 cut(s)	104, 411
BpmI	CTGGAG	1 cut(s)	637
Bpu10I	CCTNAGC	2 cut(s)	156, 417
Bpu14I	TTCGAA	1 cut(s)	738
BpuEI	CTTGAG	2 cut(s)	224, 972
BsaI	GGTCTC	2 cut(s)	223, 717
BsaJI	CCNNGG	3 cut(s)	269, 761, 957
Bsc4I	CCNNNNNNNGG	3 cut(s)	235, 605, 762
Bse1I	ACTGG	1 cut(s)	620
Bse3DI	GCAATG	1 cut(s)	97
BseBI	CCWGG	1 cut(s)	29
BseDI	CCNNGG	3 cut(s)	269, 761, 957
BseGI	GGATG	4 cut(s)	547, 677, 771, 1114
BseLI	CCNNNNNNNGG	3 cut(s)	235, 605, 762
BseMI	GCAATG	1 cut(s)	97
BseMII	CTCAG	2 cut(s)	170, 408
BseNI	ACTGG	1 cut(s)	620
BseRI	GAGGAG	3 cut(s)	101, 144, 975
BseSI	GKGCMC	1 cut(s)	613
BseXI	GCAGC	1 cut(s)	965
BshFI	GGCC	3 cut(s)	136, 598, 1034
BshNI	GGYRCC	1 cut(s)	73
BsiHKAI	GWGCWC	1 cut(s)	613
BsiSI	CCGG	1 cut(s)	833
BslFI	GGGAC	1 cut(s)	266
BslI	CCNNNNNNNGG	3 cut(s)	235, 605, 762
BsmAI	GTCTC	4 cut(s)	160, 223, 715, 717
BsmBI	CGTCTC	1 cut(s)	715
BsmFI	GGGAC	1 cut(s)	266
BsnI	GGCC	3 cut(s)	136, 598, 1034
Bso31I	GGTCTC	2 cut(s)	223, 717
Bsp119I	TTCGAA	1 cut(s)	738
Bsp1286I	GDGCHC	1 cut(s)	613
Bsp143I	GATC	6 cut(s)	199, 331, 336, 718, 891, 936
Bsp19I	CCATGG	2 cut(s)	269, 761
BspANI	GGCC	3 cut(s)	136, 598, 1034
BspCNI	CTCAG	2 cut(s)	169, 409
BspLI	GGNNCC	2 cut(s)	75, 338
BspMI	ACCTGC	1 cut(s)	306
BspPI	GGATC	3 cut(s)	331, 344, 944
BspQI	GCTCTTC	1 cut(s)	492
BspT104I	TTCGAA	1 cut(s)	738
BspT107I	GGYRCC	1 cut(s)	73
BspTNI	GGTCTC	2 cut(s)	223, 717
BsrDI	GCAATG	1 cut(s)	97
BsrI	ACTGG	1 cut(s)	620
BssECI	CCNNGG	3 cut(s)	269, 761, 957
BssMI	GATC	6 cut(s)	199, 331, 336, 718, 891, 936
BssT1I	CCWWGG	3 cut(s)	269, 761, 957
Bst2UI	CCWGG	1 cut(s)	29
Bst4CI	ACNGT	3 cut(s)	25, 103, 665
Bst6I	CTCTTC	4 cut(s)	119, 434, 439, 492
BstBI	TTCGAA	1 cut(s)	738
BstC8I	GCNNGC	3 cut(s)	266, 276, 768
BstDEI	CTNAG	3 cut(s)	156, 182, 417
BstDSI	CCRYGG	2 cut(s)	269, 761
BstF5I	GGATG	4 cut(s)	547, 677, 771, 1114
BstHHI	GCGC	1 cut(s)	908
BstKTI	GATC	6 cut(s)	202, 334, 339, 721, 894, 939
BstMAI	GTCTC	4 cut(s)	160, 223, 715, 717
BstMBI	GATC	6 cut(s)	199, 331, 336, 718, 891, 936
BstNI	CCWGG	1 cut(s)	29
BstNSI	RCATGY	1 cut(s)	268
BstSCI	CCNGG	1 cut(s)	27
BstSLI	GKGCMC	1 cut(s)	613
BstV1I	GCAGC	1 cut(s)	965
BstV2I	GAAGAC	2 cut(s)	104, 411
BstX2I	RGATCY	2 cut(s)	199, 336
BstYI	RGATCY	2 cut(s)	199, 336
BsuI	GTATCC	1 cut(s)	581
BsuRI	GGCC	3 cut(s)	136, 598, 1034
BtgI	CCRYGG	2 cut(s)	269, 761
BtsCI	GGATG	4 cut(s)	547, 677, 771, 1114
BtsIMutI	CAGTG	2 cut(s)	613, 670
BveI	ACCTGC	1 cut(s)	306
Cac8I	GCNNGC	3 cut(s)	266, 276, 768
CfoI	GCGC	1 cut(s)	908
Cfr13I	GGNCC	1 cut(s)	851
Csp6I	GTAC	2 cut(s)	74, 661
CviQI	GTAC	2 cut(s)	74, 661
DdeI	CTNAG	3 cut(s)	156, 182, 417
DpnI	GATC	6 cut(s)	201, 333, 338, 720, 893, 938
DpnII	GATC	6 cut(s)	199, 331, 336, 718, 891, 936
EaeI	YGGCCR	1 cut(s)	1032
Eam1104I	CTCTTC	4 cut(s)	119, 434, 439, 492
EarI	CTCTTC	4 cut(s)	119, 434, 439, 492
Eco130I	CCWWGG	3 cut(s)	269, 761, 957
Eco147I	AGGCCT	2 cut(s)	136, 598
Eco31I	GGTCTC	2 cut(s)	223, 717
Eco32I	GATATC	1 cut(s)	372
Eco47I	GGWCC	1 cut(s)	851
Eco57I	CTGAAG	1 cut(s)	1040
EcoRI	GAATTC	2 cut(s)	689, 734
EcoRII	CCWGG	1 cut(s)	27
EcoRV	GATATC	1 cut(s)	372
EcoT14I	CCWWGG	3 cut(s)	269, 761, 957
ErhI	CCWWGG	3 cut(s)	269, 761, 957
Esp3I	CGTCTC	1 cut(s)	715
FalI	AAGNNNNNCTT	2 cut(s)	62, 94
FaqI	GGGAC	1 cut(s)	266
FauNDI	CATATG	3 cut(s)	749, 1014, 1042
Fnu4HI	GCNGC	1 cut(s)	954
FokI	GGATG	4 cut(s)	554, 664, 758, 1101
Fsp4HI	GCNGC	1 cut(s)	954
FspBI	CTAG	2 cut(s)	435, 537
GlaI	GCGC	1 cut(s)	907
GluI	GCNGC	1 cut(s)	954
GsuI	CTGGAG	1 cut(s)	637
HaeIII	GGCC	3 cut(s)	136, 598, 1034
HapII	CCGG	1 cut(s)	833
HhaI	GCGC	1 cut(s)	908
Hin6I	GCGC	1 cut(s)	906
HinP1I	GCGC	1 cut(s)	906
HindIII	AAGCTT	1 cut(s)	912
HinfI	GANTC	5 cut(s)	32, 151, 619, 810, 829
HpaII	CCGG	1 cut(s)	833
HphI	GGTGA	1 cut(s)	74
Hpy166II	GTNNAC	3 cut(s)	295, 432, 611
Hpy188I	TCNGA	5 cut(s)	37, 150, 336, 364, 575
Hpy188III	TCNNGA	2 cut(s)	203, 722
Hpy8I	GTNNAC	3 cut(s)	295, 432, 611
Hpy99I	CGWCG	1 cut(s)	236
HpyAV	CCTTC	6 cut(s)	32, 62, 232, 856, 988, 1121
HpyCH4III	ACNGT	3 cut(s)	25, 103, 665
HpyCH4V	TGCA	9 cut(s)	90, 122, 141, 264, 301, 473, 611, 753, 1059
HpyF3I	CTNAG	3 cut(s)	156, 182, 417
HspAI	GCGC	1 cut(s)	906
KpnI	GGTACC	1 cut(s)	77
Kzo9I	GATC	6 cut(s)	199, 331, 336, 718, 891, 936
LguI	GCTCTTC	1 cut(s)	492
Lsp1109I	GCAGC	1 cut(s)	965
LweI	GCATC	1 cut(s)	460
MaeI	CTAG	2 cut(s)	435, 537
MaeIII	GTNAC	3 cut(s)	19, 314, 1100
MalI	GATC	6 cut(s)	201, 333, 338, 720, 893, 938
MboI	GATC	6 cut(s)	199, 331, 336, 718, 891, 936
MboII	GAAGA	8 cut(s)	106, 109, 395, 416, 451, 456, 509, 531
MfeI	CAATTG	1 cut(s)	375
MflI	RGATCY	2 cut(s)	199, 336
MhlI	GDGCHC	1 cut(s)	613
MlsI	TGGCCA	1 cut(s)	1034
MluCI	AATT	7 cut(s)	124, 242, 375, 452, 689, 734, 846
MluNI	TGGCCA	1 cut(s)	1034
MlyI	GAGTC	2 cut(s)	145, 628
MmeI	TCCRAC	3 cut(s)	705, 1005, 1142
Mox20I	TGGCCA	1 cut(s)	1034
MroXI	GAANNNNTTC	1 cut(s)	501
MscI	TGGCCA	1 cut(s)	1034
MseI	TTAA	4 cut(s)	455, 816, 822, 1141
MslI	CAYNNNNRTG	2 cut(s)	1045, 1087
Msp20I	TGGCCA	1 cut(s)	1034
MspI	CCGG	1 cut(s)	833
MspR9I	CCNGG	1 cut(s)	29
MunI	CAATTG	1 cut(s)	375
MvaI	CCWGG	1 cut(s)	29
NcoI	CCATGG	2 cut(s)	269, 761
NdeI	CATATG	3 cut(s)	749, 1014, 1042
NdeII	GATC	6 cut(s)	199, 331, 336, 718, 891, 936
NlaIV	GGNNCC	2 cut(s)	75, 338
NmuCI	GTSAC	2 cut(s)	314, 1100
NspI	RCATGY	1 cut(s)	268
NspV	TTCGAA	1 cut(s)	738
PaeI	GCATGC	1 cut(s)	268
PceI	AGGCCT	2 cut(s)	136, 598
PciSI	GCTCTTC	1 cut(s)	492
PcsI	WCGNNNNNNNCGW	1 cut(s)	231
PdmI	GAANNNNTTC	1 cut(s)	501
PfeI	GAWTC	3 cut(s)	32, 810, 829
PflMI	CCANNNNNTGG	1 cut(s)	762
PfoI	TCCNGGA	1 cut(s)	27
PkrI	GCNGC	1 cut(s)	955
PleI	GAGTC	2 cut(s)	145, 627
PpsI	GAGTC	2 cut(s)	145, 627
Psp6I	CCWGG	1 cut(s)	27
PspGI	CCWGG	1 cut(s)	27
PspN4I	GGNNCC	2 cut(s)	75, 338
PspPI	GGNCC	1 cut(s)	851
PsuI	RGATCY	2 cut(s)	199, 336
RsaI	GTAC	2 cut(s)	75, 662
RsaNI	GTAC	2 cut(s)	74, 661
RseI	CAYNNNNRTG	2 cut(s)	1045, 1087
SapI	GCTCTTC	1 cut(s)	492
SaqAI	TTAA	4 cut(s)	455, 816, 822, 1141
SatI	GCNGC	1 cut(s)	954
Sau3AI	GATC	6 cut(s)	199, 331, 336, 718, 891, 936
Sau96I	GGNCC	1 cut(s)	851
SchI	GAGTC	2 cut(s)	145, 628
ScrFI	CCNGG	1 cut(s)	29
SduI	GDGCHC	1 cut(s)	613
SfaNI	GCATC	1 cut(s)	460
SfuI	TTCGAA	1 cut(s)	738
SinI	GGWCC	1 cut(s)	851
SmiMI	CAYNNNNRTG	2 cut(s)	1045, 1087
SmlI	CTYRAG	2 cut(s)	203, 987
SmoI	CTYRAG	2 cut(s)	203, 987
SphI	GCATGC	1 cut(s)	268
Sse9I	AATT	7 cut(s)	124, 242, 375, 452, 689, 734, 846
SseBI	AGGCCT	2 cut(s)	136, 598
SspMI	CTAG	2 cut(s)	435, 537
StuI	AGGCCT	2 cut(s)	136, 598
StyD4I	CCNGG	1 cut(s)	27
StyI	CCWWGG	3 cut(s)	269, 761, 957
TaaI	ACNGT	3 cut(s)	25, 103, 665
TaqI	TCGA	4 cut(s)	225, 288, 721, 738
TasI	AATT	7 cut(s)	124, 242, 375, 452, 689, 734, 846
TfiI	GAWTC	3 cut(s)	32, 810, 829
Tru1I	TTAA	4 cut(s)	455, 816, 822, 1141
Tru9I	TTAA	4 cut(s)	455, 816, 822, 1141
TscAI	CASTG	2 cut(s)	620, 670
TseFI	GTSAC	2 cut(s)	314, 1100
TseI	GCWGC	1 cut(s)	953
Tsp45I	GTSAC	2 cut(s)	314, 1100
TspDTI	ATGAA	3 cut(s)	264, 702, 1103
TspGWI	ACGGA	1 cut(s)	417
TspRI	CASTG	2 cut(s)	620, 670
Van91I	CCANNNNNTGG	1 cut(s)	762
VneI	GTGCAC	1 cut(s)	609
VpaK11BI	GGWCC	1 cut(s)	851
XapI	RAATTY	3 cut(s)	242, 689, 734
XceI	RCATGY	1 cut(s)	268
XmnI	GAANNNNTTC	1 cut(s)	501
XspI	CTAG	2 cut(s)	435, 537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.