Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0005579

Physical Location & Seq

Genomic Coordinates Forward (+)

5202093 .. 5203007

Gene Structure 915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010903

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGTGCTGAGGCATTTCCATTCACTAGGAAGAGGAGAGGAATTAAGGGAAATAGATGATGCAAAGCGTGAAGGTGGAATACTTGAAGAGCTTCTGGCACATCAAGGAAGAAATTATCTCATGTCTAGGGATGATCGAGACCTCAAAGAACTCGAACTAAACATATGCACCATGCCATGGCCTGCCATCCCCTACCATGATAAATCAAGACAAGACCTTTATGGGAAGGCTGTTAGCACAAAGGGGAGGGCTTTGATCTCTTTGCATGGCGCAAAAGCTTTCCCATTTACAGAGTTGAGGATCAAAGAGGTCGAAGCAGCCTTGGGAAAAGAAGGAGAGGCATTGCCTCCTCAAGTGAAGGATATAAAGCGTGAGCATATGCTGAAGTTGGACATGACCAAAGCATATATAAGTCGTTTTAAGAAGCTTATGAACTATGATATGAACTATGAAGTGCAAGAATCAAGGTTGGTTCTGGGATTTTTTGAGCGATCTGTGTCACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0042221 GO:0044424 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C1_2 Thioredoxin_8

Protein Analysis

169

Amino Acids

19.48

Weight (kDa)

7.85

Isoelectric Point (pI)

44.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005579)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31240 AT4G31240
fragaria_vesca	FvH4_2g36550 FvH4_2g36550 FvH4_2g36550 FvH4_2g36550
malus_domestica	MD08G1125400.v1.1 MD15G1105200.v1.1
prunus_persica	Prupe.1G457000_v2.0.a1 Prupe.1G457000_v2.0.a1 Prupe.1G457000_v2.0.a1 Prupe.1G457000_v2.0.a1 Prupe.1G457000_v2.0.a1
pyrus_communis	pycom08g10440
rosa_chinensis	RchiOBHm_Chr6g0305301
rosa_laevigata	RLG00000010903
rosa_multiflora	Rmu_ssc0000148.1_g000001
rosa_roxburghii	Rroxscaffold_7G00162920
rosa_rugosa	Rorug06G0339300 Rorug06G0339500
rosa_samantha	Rh6AG451000 Rh6BG450300 Rh6BG450600 Rh6CG464900 Rh6CG465300 Rh6DG451500 Rh6DG451800
rosa_wichuraiana	Rw6G039310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	177
AclWI	GGATC	1 cut(s)	308
AcuI	CTGAAG	1 cut(s)	404
AfiI	CCNNNNNNNGG	1 cut(s)	177
AgsI	TTSAA	1 cut(s)	86
AluBI	AGCT	3 cut(s)	91, 278, 427
AluI	AGCT	3 cut(s)	91, 278, 427
Alw26I	GTCTC	1 cut(s)	132
AlwI	GGATC	1 cut(s)	308
AoxI	GGCC	1 cut(s)	179
ApeKI	GCWGC	1 cut(s)	317
Asp700I	GAANNNNTTC	1 cut(s)	90
AspLEI	GCGC	1 cut(s)	272
BarI	GAAGNNNNNNTAC	2 cut(s)	63, 95
BbvCI	CCTCAGC	1 cut(s)	8
BbvI	GCAGC	1 cut(s)	329
BccI	CCATC	1 cut(s)	194
BcoDI	GTCTC	1 cut(s)	132
BfaI	CTAG	2 cut(s)	26, 126
BisI	GCNGC	1 cut(s)	318
BlsI	GCNGC	1 cut(s)	319
BmsI	GCATC	1 cut(s)	49
Bpu10I	CCTNAGC	1 cut(s)	8
BpuEI	CTTGAG	1 cut(s)	336
BsaI	GGTCTC	1 cut(s)	132
BsaJI	CCNNGG	2 cut(s)	176, 321
Bsc4I	CCNNNNNNNGG	1 cut(s)	177
Bse3DI	GCAATG	1 cut(s)	341
BseDI	CCNNGG	2 cut(s)	176, 321
BseGI	GGATG	2 cut(s)	136, 186
BseLI	CCNNNNNNNGG	1 cut(s)	177
BseMI	GCAATG	1 cut(s)	341
BseRI	GAGGAG	2 cut(s)	48, 339
BseXI	GCAGC	1 cut(s)	329
BshFI	GGCC	1 cut(s)	181
BslI	CCNNNNNNNGG	1 cut(s)	177
BsmAI	GTCTC	1 cut(s)	132
BsnI	GGCC	1 cut(s)	181
Bso31I	GGTCTC	1 cut(s)	132
Bsp143I	GATC	4 cut(s)	133, 255, 300, 491
Bsp19I	CCATGG	1 cut(s)	176
BspANI	GGCC	1 cut(s)	181
BspPI	GGATC	1 cut(s)	308
BspQI	GCTCTTC	1 cut(s)	81
BspTNI	GGTCTC	1 cut(s)	132
BsrDI	GCAATG	1 cut(s)	341
BssECI	CCNNGG	2 cut(s)	176, 321
BssMI	GATC	4 cut(s)	133, 255, 300, 491
BssT1I	CCWWGG	2 cut(s)	176, 321
Bst6I	CTCTTC	2 cut(s)	25, 81
BstC8I	GCNNGC	1 cut(s)	183
BstDEI	CTNAG	1 cut(s)	8
BstDSI	CCRYGG	1 cut(s)	176
BstF5I	GGATG	2 cut(s)	136, 186
BstHHI	GCGC	1 cut(s)	272
BstKTI	GATC	4 cut(s)	136, 258, 303, 494
BstMAI	GTCTC	1 cut(s)	132
BstMBI	GATC	4 cut(s)	133, 255, 300, 491
BstV1I	GCAGC	1 cut(s)	329
BsuRI	GGCC	1 cut(s)	181
BtgI	CCRYGG	1 cut(s)	176
BtsCI	GGATG	2 cut(s)	136, 186
Cac8I	GCNNGC	1 cut(s)	183
CfoI	GCGC	1 cut(s)	272
CviAII	CATG	6 cut(s)	121, 172, 177, 197, 266, 394
CviJI	RGCY	7 cut(s)	91, 181, 230, 251, 278, 320, 427
CviKI_1	RGCY	7 cut(s)	91, 181, 230, 251, 278, 320, 427
DdeI	CTNAG	1 cut(s)	8
DpnI	GATC	4 cut(s)	135, 257, 302, 493
DpnII	GATC	4 cut(s)	133, 255, 300, 491
Eam1104I	CTCTTC	2 cut(s)	25, 81
EarI	CTCTTC	2 cut(s)	25, 81
Eco130I	CCWWGG	2 cut(s)	176, 321
Eco31I	GGTCTC	1 cut(s)	132
Eco57I	CTGAAG	1 cut(s)	404
EcoT14I	CCWWGG	2 cut(s)	176, 321
ErhI	CCWWGG	2 cut(s)	176, 321
FaeI	CATG	6 cut(s)	124, 175, 180, 200, 269, 397
FatI	CATG	6 cut(s)	120, 171, 176, 196, 265, 393
FauNDI	CATATG	2 cut(s)	164, 378
Fnu4HI	GCNGC	1 cut(s)	318
FokI	GGATG	2 cut(s)	143, 173
Fsp4HI	GCNGC	1 cut(s)	318
FspBI	CTAG	2 cut(s)	26, 126
GlaI	GCGC	1 cut(s)	271
GluI	GCNGC	1 cut(s)	318
HaeIII	GGCC	1 cut(s)	181
HhaI	GCGC	1 cut(s)	272
Hin1II	CATG	6 cut(s)	124, 175, 180, 200, 269, 397
Hin6I	GCGC	1 cut(s)	270
HinP1I	GCGC	1 cut(s)	270
HindIII	AAGCTT	2 cut(s)	276, 425
HinfI	GANTC	1 cut(s)	461
Hpy188III	TCNNGA	2 cut(s)	137, 207
HpyAV	CCTTC	4 cut(s)	65, 220, 326, 352
HpyCH4V	TGCA	4 cut(s)	62, 168, 265, 457
HpyF3I	CTNAG	1 cut(s)	8
Hsp92II	CATG	6 cut(s)	124, 175, 180, 200, 269, 397
HspAI	GCGC	1 cut(s)	270
Kzo9I	GATC	4 cut(s)	133, 255, 300, 491
LguI	GCTCTTC	1 cut(s)	81
LpnPI	CCDG	3 cut(s)	80, 195, 461
Lsp1109I	GCAGC	1 cut(s)	329
LweI	GCATC	1 cut(s)	49
MaeI	CTAG	2 cut(s)	26, 126
MaeIII	GTNAC	1 cut(s)	498
MalI	GATC	4 cut(s)	135, 257, 302, 493
MboI	GATC	4 cut(s)	133, 255, 300, 491
MboII	GAAGA	3 cut(s)	42, 98, 120
MluCI	AATT	2 cut(s)	41, 112
MmeI	TCCRAC	1 cut(s)	369
MroXI	GAANNNNTTC	1 cut(s)	90
MseI	TTAA	2 cut(s)	44, 420
NcoI	CCATGG	1 cut(s)	176
NdeI	CATATG	2 cut(s)	164, 378
NdeII	GATC	4 cut(s)	133, 255, 300, 491
NlaIII	CATG	6 cut(s)	124, 175, 180, 200, 269, 397
NmuCI	GTSAC	1 cut(s)	498
PciSI	GCTCTTC	1 cut(s)	81
PdmI	GAANNNNTTC	1 cut(s)	90
PfeI	GAWTC	1 cut(s)	461
PflMI	CCANNNNNTGG	1 cut(s)	177
PkrI	GCNGC	1 cut(s)	319
SapI	GCTCTTC	1 cut(s)	81
SaqAI	TTAA	2 cut(s)	44, 420
SatI	GCNGC	1 cut(s)	318
Sau3AI	GATC	4 cut(s)	133, 255, 300, 491
SetI	ASST	8 cut(s)	76, 93, 144, 219, 280, 312, 429, 470
SfaNI	GCATC	1 cut(s)	49
SmlI	CTYRAG	1 cut(s)	351
SmoI	CTYRAG	1 cut(s)	351
Sse9I	AATT	2 cut(s)	41, 112
SspMI	CTAG	2 cut(s)	26, 126
StyI	CCWWGG	2 cut(s)	176, 321
TaqI	TCGA	3 cut(s)	136, 153, 312
TasI	AATT	2 cut(s)	41, 112
TfiI	GAWTC	1 cut(s)	461
Tru1I	TTAA	2 cut(s)	44, 420
Tru9I	TTAA	2 cut(s)	44, 420
TseFI	GTSAC	1 cut(s)	498
TseI	GCWGC	1 cut(s)	317
Tsp45I	GTSAC	1 cut(s)	498
TspDTI	ATGAA	3 cut(s)	446, 458, 465
Van91I	CCANNNNNTGG	1 cut(s)	177
XmnI	GAANNNNTTC	1 cut(s)	90
XspI	CTAG	2 cut(s)	26, 126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.