Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0005579

Physical Location & Seq

Genomic Coordinates Forward (+)

66473569 .. 66473838

Gene Structure 270 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG450600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGCCATGGCCTGCCATCCCCTACCGTGATAAAACAAGACAAGACCTTTGCCGAATCTTTAACATTAAAGAGATTCCGGCTTTGGTTTTAATTGGACCAGATGGGAAGGCTGTTAGCACAAAGGGGAGGGCTTTGATCTCTTTGCATGGCGCAAAAGCTTTCCCATTTACAGAGTTGAGGATCAAAGAGGTCGAAGCAGCCTTGGGAAAAGAAGGAGAGGCATTGTCTCCTCAAGCGAAGGATATAAAGCGAGAGCATATATGTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0042221 GO:0044424 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C1_2 Thioredoxin_8

Protein Analysis

89

Amino Acids

9.9

Weight (kDa)

9.3

Isoelectric Point (pI)

44.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin_8	PF13905	1 - 36	9e-06	Thioredoxin-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005579)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31240 AT4G31240
fragaria_vesca	FvH4_2g36550 FvH4_2g36550 FvH4_2g36550 FvH4_2g36550
malus_domestica	MD08G1125400.v1.1 MD15G1105200.v1.1
prunus_persica	Prupe.1G457000_v2.0.a1 Prupe.1G457000_v2.0.a1 Prupe.1G457000_v2.0.a1 Prupe.1G457000_v2.0.a1 Prupe.1G457000_v2.0.a1
pyrus_communis	pycom08g10440
rosa_chinensis	RchiOBHm_Chr6g0305301
rosa_laevigata	RLG00000010903
rosa_multiflora	Rmu_ssc0000148.1_g000001
rosa_roxburghii	Rroxscaffold_7G00162920
rosa_rugosa	Rorug06G0339300 Rorug06G0339500
rosa_samantha	Rh6AG451000 Rh6BG450300 Rh6BG450600 Rh6CG464900 Rh6CG465300 Rh6DG451500 Rh6DG451800
rosa_wichuraiana	Rw6G039310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	188
AluBI	AGCT	1 cut(s)	158
AluI	AGCT	1 cut(s)	158
Alw26I	GTCTC	1 cut(s)	231
AlwI	GGATC	1 cut(s)	188
AoxI	GGCC	1 cut(s)	8
ApeKI	GCWGC	1 cut(s)	197
ArsI	GACNNNNNNTTYG	2 cut(s)	30, 62
AspLEI	GCGC	1 cut(s)	152
AspS9I	GGNCC	1 cut(s)	95
AvaII	GGWCC	1 cut(s)	95
BbvI	GCAGC	1 cut(s)	209
BccI	CCATC	2 cut(s)	23, 95
BcoDI	GTCTC	1 cut(s)	231
BisI	GCNGC	1 cut(s)	198
BlsI	GCNGC	1 cut(s)	199
Bme18I	GGWCC	1 cut(s)	95
BmgT120I	GGNCC	1 cut(s)	95
BpuEI	CTTGAG	1 cut(s)	216
BsaJI	CCNNGG	2 cut(s)	5, 201
BseDI	CCNNGG	2 cut(s)	5, 201
BseGI	GGATG	1 cut(s)	15
BseRI	GAGGAG	1 cut(s)	219
BseXI	GCAGC	1 cut(s)	209
BshFI	GGCC	1 cut(s)	10
BsiSI	CCGG	1 cut(s)	77
BsmAI	GTCTC	1 cut(s)	231
BsnI	GGCC	1 cut(s)	10
Bsp143I	GATC	2 cut(s)	135, 180
Bsp19I	CCATGG	1 cut(s)	5
BspANI	GGCC	1 cut(s)	10
BspPI	GGATC	1 cut(s)	188
BssECI	CCNNGG	2 cut(s)	5, 201
BssMI	GATC	2 cut(s)	135, 180
BssT1I	CCWWGG	2 cut(s)	5, 201
Bst4CI	ACNGT	1 cut(s)	26
BstC8I	GCNNGC	1 cut(s)	12
BstDSI	CCRYGG	1 cut(s)	5
BstF5I	GGATG	1 cut(s)	15
BstHHI	GCGC	1 cut(s)	152
BstKTI	GATC	2 cut(s)	138, 183
BstMAI	GTCTC	1 cut(s)	231
BstMBI	GATC	2 cut(s)	135, 180
BstV1I	GCAGC	1 cut(s)	209
BsuRI	GGCC	1 cut(s)	10
BtgI	CCRYGG	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	15
Cac8I	GCNNGC	1 cut(s)	12
CfoI	GCGC	1 cut(s)	152
Cfr13I	GGNCC	1 cut(s)	95
CviAII	CATG	2 cut(s)	6, 146
CviJI	RGCY	6 cut(s)	10, 80, 110, 131, 158, 200
CviKI_1	RGCY	6 cut(s)	10, 80, 110, 131, 158, 200
DpnI	GATC	2 cut(s)	137, 182
DpnII	GATC	2 cut(s)	135, 180
Eco130I	CCWWGG	2 cut(s)	5, 201
Eco47I	GGWCC	1 cut(s)	95
EcoT14I	CCWWGG	2 cut(s)	5, 201
ErhI	CCWWGG	2 cut(s)	5, 201
FaeI	CATG	2 cut(s)	9, 149
FaiI	YATR	7 cut(s)	7, 147, 245, 258, 260, 262, 266
FatI	CATG	2 cut(s)	5, 145
Fnu4HI	GCNGC	1 cut(s)	198
FokI	GGATG	1 cut(s)	2
Fsp4HI	GCNGC	1 cut(s)	198
GlaI	GCGC	1 cut(s)	151
GluI	GCNGC	1 cut(s)	198
HaeIII	GGCC	1 cut(s)	10
HapII	CCGG	1 cut(s)	77
HhaI	GCGC	1 cut(s)	152
Hin1II	CATG	2 cut(s)	9, 149
Hin6I	GCGC	1 cut(s)	150
HinP1I	GCGC	1 cut(s)	150
HindIII	AAGCTT	1 cut(s)	156
HinfI	GANTC	2 cut(s)	54, 73
HpaII	CCGG	1 cut(s)	77
HpyAV	CCTTC	3 cut(s)	100, 206, 232
HpyCH4III	ACNGT	1 cut(s)	26
HpyCH4V	TGCA	1 cut(s)	145
Hsp92II	CATG	2 cut(s)	9, 149
HspAI	GCGC	1 cut(s)	150
Kzo9I	GATC	2 cut(s)	135, 180
LpnPI	CCDG	3 cut(s)	24, 90, 111
Lsp1109I	GCAGC	1 cut(s)	209
MalI	GATC	2 cut(s)	137, 182
MboI	GATC	2 cut(s)	135, 180
MluCI	AATT	1 cut(s)	90
MnlI	CCTC	5 cut(s)	120, 171, 181, 211, 240
MseI	TTAA	3 cut(s)	60, 66, 89
MspI	CCGG	1 cut(s)	77
NcoI	CCATGG	1 cut(s)	5
NdeII	GATC	2 cut(s)	135, 180
NlaIII	CATG	2 cut(s)	9, 149
PfeI	GAWTC	2 cut(s)	54, 73
PkrI	GCNGC	1 cut(s)	199
PspPI	GGNCC	1 cut(s)	95
SaqAI	TTAA	3 cut(s)	60, 66, 89
SatI	GCNGC	1 cut(s)	198
Sau3AI	GATC	2 cut(s)	135, 180
Sau96I	GGNCC	1 cut(s)	95
SetI	ASST	3 cut(s)	48, 160, 192
SinI	GGWCC	1 cut(s)	95
SmlI	CTYRAG	1 cut(s)	231
SmoI	CTYRAG	1 cut(s)	231
Sse9I	AATT	1 cut(s)	90
StyI	CCWWGG	2 cut(s)	5, 201
TaaI	ACNGT	1 cut(s)	26
TaqI	TCGA	1 cut(s)	192
TasI	AATT	1 cut(s)	90
TfiI	GAWTC	2 cut(s)	54, 73
Tru1I	TTAA	3 cut(s)	60, 66, 89
Tru9I	TTAA	3 cut(s)	60, 66, 89
TseI	GCWGC	1 cut(s)	197
VpaK11BI	GGWCC	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.