Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0005579

Physical Location & Seq

Genomic Coordinates Forward (+)

8727536 .. 8728982

Gene Structure 1447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g10440.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGGCAGTGCATAGCAGCAATATAGCAACCGTCCTCGAATCTGAAGGAGTTGAGTTCCTTCTATCCGGCGACACAAGGGTACCGTTGTTGTCATGTAATGGGAAGACAGTGTGCCTCTACTTCTCTGCAAATTGGTGTCGGCCTTGCAAGGCTCTTACCCCTCAGCTGGTGCGACTTTATGAAGTGCTTAGATTGGAAGGAAAAGAGTTTGAGATAATCTTCATATCCTTCGACCGTGATGAGGAAAAGTTCAATGAACACTTCAAGTGCATGCCGTGGCTGGCAGTGCCATTCGATGCTAATCTTCATAAAAGATTGAGTGACATGTACCGCATAGATCGCATCCCATCACTCATTTCATTAAGTTCAGATGGAATATCAATTGAGGAAGACTTGGTTGGATTAATTGAAGACTATGGAGCTGATGCATTTCCATTCACTAACAAGAGAAGAGAAGAGCTAAAGGCTGCCGATGAAGCAAAGCGTGAAGGGGGAAAAATCGAAGAGTTGTTGACGCATCAAGGAAGAAACCATGTCTTGTCTAGTGATGGCAGAGAGATACAGGCGTCTCAACTTGTTGGTAAGACAGTAGGCCTTTACTTTGGTGCACATTGGAGCCCTCCTTGCCGTGCTTTTACTTCCAAACTCATAGAAGCATACGAAGAGCTCATGACCTCCGGTGATCAAGACTTCGAAATCATCCTAGTCTCCACAGACCGAGACCTCAAGGAGTTTGAACTCAACACTAGTAGCATGCCATGGCTTGCCATACCCTACCAGGACAAAACAAGACAAGACCTTTGTAGAATCTTCGACATCAAAGTGATTCCGGCTCTGGTTCTGATAGGACCGAATGGGAAGGCGATTAGCACGAATGGGAAGGCCATGGTCTCCTTATACGGTGCCAAGGCCTTCCCGTTCACAGAAGCGAGGATCACAGAGCTCGAAGCAGAATTGAGAAAAGAAGGAGAGGCATTGCCTCCTCAATTGAAGGACTTGAAGCATAAACATTTGCTTAAGTTGGAGATGGCCAAAGCATTTGTGTGTGATTATTGCCAAAAACAGGGGAGGTTTTGGGCATTTTCTTGCGGTGTTTGTGATTACGATCTTCATCCAAACTGCGTAGAAAAATCATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0042221 GO:0044424 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C1_2 Thioredoxin_8

Protein Analysis

380

Amino Acids

42.9

Weight (kDa)

5.44

Isoelectric Point (pI)

42.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005579)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31240 AT4G31240
fragaria_vesca	FvH4_2g36550 FvH4_2g36550 FvH4_2g36550 FvH4_2g36550
malus_domestica	MD08G1125400.v1.1 MD15G1105200.v1.1
prunus_persica	Prupe.1G457000_v2.0.a1 Prupe.1G457000_v2.0.a1 Prupe.1G457000_v2.0.a1 Prupe.1G457000_v2.0.a1 Prupe.1G457000_v2.0.a1
pyrus_communis	pycom08g10440
rosa_chinensis	RchiOBHm_Chr6g0305301
rosa_laevigata	RLG00000010903
rosa_multiflora	Rmu_ssc0000148.1_g000001
rosa_roxburghii	Rroxscaffold_7G00162920
rosa_rugosa	Rorug06G0339300 Rorug06G0339500
rosa_samantha	Rh6AG451000 Rh6BG450300 Rh6BG450600 Rh6CG464900 Rh6CG465300 Rh6DG451500 Rh6DG451800
rosa_wichuraiana	Rw6G039310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	79
AccB1I	GGYRCC	2 cut(s)	79, 902
AciI	CCGC	2 cut(s)	331, 1089
AclWI	GGATC	1 cut(s)	941
AcoI	YGGCCR	1 cut(s)	1029
AcuI	CTGAAG	1 cut(s)	63
AcyI	GRCGYC	1 cut(s)	566
AfaI	GTAC	2 cut(s)	81, 329
AfiI	CCNNNNNNNGG	3 cut(s)	166, 241, 1063
AflII	CTTAAG	1 cut(s)	1016
AflIII	ACRYGT	1 cut(s)	324
AgsI	TTSAA	6 cut(s)	253, 265, 410, 737, 991, 1000
AhlI	ACTAGT	1 cut(s)	746
AjnI	CCWGG	1 cut(s)	777
AjuI	GAANNNNNNNTTGG	2 cut(s)	381, 413
AluBI	AGCT	5 cut(s)	166, 422, 460, 667, 943
AluI	AGCT	5 cut(s)	166, 422, 460, 667, 943
Alw21I	GWGCWC	3 cut(s)	610, 669, 945
Alw26I	GTCTC	4 cut(s)	573, 712, 714, 895
Alw44I	GTGCAC	1 cut(s)	606
AlwI	GGATC	1 cut(s)	941
AoxI	GGCC	5 cut(s)	140, 592, 882, 909, 1029
ApaLI	GTGCAC	1 cut(s)	606
ApeKI	GCWGC	2 cut(s)	15, 467
ArsI	GACNNNNNNTTYG	2 cut(s)	783, 815
AseI	ATTAAT	1 cut(s)	404
Asp718I	GGTACC	1 cut(s)	79
AspS9I	GGNCC	1 cut(s)	848
AsuHPI	GGTGA	1 cut(s)	692
AsuII	TTCGAA	1 cut(s)	693
AvaII	GGWCC	1 cut(s)	848
BaeGI	GKGCMC	1 cut(s)	610
BaeI	ACNNNNGTAYC	6 cut(s)	63, 71, 96, 104, 551, 584
BalI	TGGCCA	1 cut(s)	1031
BanI	GGYRCC	2 cut(s)	79, 902
BanII	GRGCYC	3 cut(s)	620, 669, 945
BbsI	GAAGAC	3 cut(s)	110, 396, 417
Bbv12I	GWGCWC	3 cut(s)	610, 669, 945
BbvCI	CCTCAGC	1 cut(s)	162
BbvI	GCAGC	2 cut(s)	27, 454
BccI	CCATC	4 cut(s)	355, 365, 542, 1021
BceAI	ACGGC	2 cut(s)	259, 612
BciT130I	CCWGG	1 cut(s)	779
BclI	TGATCA	1 cut(s)	682
BcoDI	GTCTC	4 cut(s)	573, 712, 714, 895
BcuI	ACTAGT	1 cut(s)	746
BfaI	CTAG	3 cut(s)	543, 704, 747
BfrI	CTTAAG	1 cut(s)	1016
BisI	GCNGC	2 cut(s)	16, 468
BlsI	GCNGC	2 cut(s)	17, 469
Bme1390I	CCNGG	1 cut(s)	779
Bme18I	GGWCC	1 cut(s)	848
BmgT120I	GGNCC	1 cut(s)	848
BmiI	GGNNCC	3 cut(s)	81, 617, 904
BmrFI	CCNGG	1 cut(s)	779
BmsI	GCATC	4 cut(s)	286, 351, 415, 526
BpiI	GAAGAC	3 cut(s)	110, 396, 417
Bpu10I	CCTNAGC	1 cut(s)	162
Bpu14I	TTCGAA	1 cut(s)	693
BpuEI	CTTGAG	1 cut(s)	710
BsaBI	GATNNNNATC	3 cut(s)	300, 1104, 1110
BsaHI	GRCGYC	1 cut(s)	566
BsaI	GGTCTC	2 cut(s)	714, 895
BsaJI	CCNNGG	4 cut(s)	275, 758, 885, 906
BsaWI	WCCGGW	1 cut(s)	677
Bsc4I	CCNNNNNNNGG	3 cut(s)	166, 241, 1063
Bse3DI	GCAATG	1 cut(s)	974
Bse8I	GATNNNNATC	3 cut(s)	300, 1104, 1110
BseBI	CCWGG	1 cut(s)	779
BseDI	CCNNGG	4 cut(s)	275, 758, 885, 906
BseGI	GGATG	3 cut(s)	342, 699, 1111
BseJI	GATNNNNATC	3 cut(s)	300, 1104, 1110
BseLI	CCNNNNNNNGG	3 cut(s)	166, 241, 1063
BseMI	GCAATG	1 cut(s)	974
BseMII	CTCAG	1 cut(s)	176
BseRI	GAGGAG	1 cut(s)	972
BseSI	GKGCMC	1 cut(s)	610
BseXI	GCAGC	2 cut(s)	27, 454
Bsh1285I	CGRYCG	1 cut(s)	235
BshFI	GGCC	5 cut(s)	142, 594, 884, 911, 1031
BshNI	GGYRCC	2 cut(s)	79, 902
BsiEI	CGRYCG	1 cut(s)	235
BsiHKAI	GWGCWC	3 cut(s)	610, 669, 945
BsiSI	CCGG	3 cut(s)	66, 678, 830
BslI	CCNNNNNNNGG	3 cut(s)	166, 241, 1063
BsmAI	GTCTC	4 cut(s)	573, 712, 714, 895
BsmBI	CGTCTC	1 cut(s)	573
BsnI	GGCC	5 cut(s)	142, 594, 884, 911, 1031
Bso31I	GGTCTC	2 cut(s)	714, 895
Bsp119I	TTCGAA	1 cut(s)	693
Bsp1286I	GDGCHC	4 cut(s)	610, 620, 669, 945
Bsp143I	GATC	4 cut(s)	337, 682, 933, 1105
Bsp19I	CCATGG	2 cut(s)	758, 885
BspACI	CCGC	2 cut(s)	331, 1089
BspANI	GGCC	5 cut(s)	142, 594, 884, 911, 1031
BspCNI	CTCAG	1 cut(s)	175
BspHI	TCATGA	1 cut(s)	669
BspLI	GGNNCC	3 cut(s)	81, 617, 904
BspPI	GGATC	1 cut(s)	941
BspQI	GCTCTTC	2 cut(s)	450, 657
BspT104I	TTCGAA	1 cut(s)	693
BspT107I	GGYRCC	2 cut(s)	79, 902
BspTI	CTTAAG	1 cut(s)	1016
BspTNI	GGTCTC	2 cut(s)	714, 895
BsrDI	GCAATG	1 cut(s)	974
BssECI	CCNNGG	4 cut(s)	275, 758, 885, 906
BssMI	GATC	4 cut(s)	337, 682, 933, 1105
BssNI	GRCGYC	1 cut(s)	566
BssT1I	CCWWGG	3 cut(s)	758, 885, 906
Bst2UI	CCWGG	1 cut(s)	779
Bst4CI	ACNGT	6 cut(s)	31, 84, 109, 236, 589, 902
Bst6I	CTCTTC	4 cut(s)	445, 450, 498, 657
BstACI	GRCGYC	1 cut(s)	566
BstAFI	CTTAAG	1 cut(s)	1016
BstBI	TTCGAA	1 cut(s)	693
BstC8I	GCNNGC	4 cut(s)	272, 282, 755, 765
BstDEI	CTNAG	2 cut(s)	162, 188
BstDSI	CCRYGG	3 cut(s)	275, 758, 885
BstF5I	GGATG	3 cut(s)	342, 699, 1111
BstKTI	GATC	4 cut(s)	340, 685, 936, 1108
BstMAI	GTCTC	4 cut(s)	573, 712, 714, 895
BstMBI	GATC	4 cut(s)	337, 682, 933, 1105
BstMCI	CGRYCG	1 cut(s)	235
BstMWI	GCNNNNNNNGC	4 cut(s)	286, 339, 476, 624
BstNI	CCWGG	1 cut(s)	779
BstNSI	RCATGY	3 cut(s)	274, 328, 757
BstSCI	CCNGG	1 cut(s)	777
BstSLI	GKGCMC	1 cut(s)	610
BstV1I	GCAGC	2 cut(s)	27, 454
BstV2I	GAAGAC	3 cut(s)	110, 396, 417
BsuRI	GGCC	5 cut(s)	142, 594, 884, 911, 1031
BtgI	CCRYGG	3 cut(s)	275, 758, 885
BtsCI	GGATG	3 cut(s)	342, 699, 1111
BtsI	GCAGTG	2 cut(s)	12, 291
BtsIMutI	CAGTG	3 cut(s)	12, 114, 291
Cac8I	GCNNGC	4 cut(s)	272, 282, 755, 765
CciI	TCATGA	1 cut(s)	669
Cfr13I	GGNCC	1 cut(s)	848
CseI	GACGC	2 cut(s)	523, 555
Csp6I	GTAC	2 cut(s)	80, 328
CviAII	CATG	8 cut(s)	93, 271, 325, 533, 670, 754, 759, 886
CviQI	GTAC	2 cut(s)	80, 328
DdeI	CTNAG	2 cut(s)	162, 188
DpnI	GATC	4 cut(s)	339, 684, 935, 1107
DpnII	GATC	4 cut(s)	337, 682, 933, 1105
EaeI	YGGCCR	1 cut(s)	1029
Eam1104I	CTCTTC	4 cut(s)	445, 450, 498, 657
EarI	CTCTTC	4 cut(s)	445, 450, 498, 657
Ecl136II	GAGCTC	2 cut(s)	667, 943
Eco130I	CCWWGG	3 cut(s)	758, 885, 906
Eco147I	AGGCCT	2 cut(s)	594, 911
Eco24I	GRGCYC	3 cut(s)	620, 669, 945
Eco31I	GGTCTC	2 cut(s)	714, 895
Eco47I	GGWCC	1 cut(s)	848
Eco53kI	GAGCTC	2 cut(s)	667, 943
Eco57I	CTGAAG	1 cut(s)	63
EcoICRI	GAGCTC	2 cut(s)	667, 943
EcoRII	CCWGG	1 cut(s)	777
EcoT14I	CCWWGG	3 cut(s)	758, 885, 906
EcoT22I	ATGCAT	1 cut(s)	430
EcoT38I	GRGCYC	3 cut(s)	620, 669, 945
ErhI	CCWWGG	3 cut(s)	758, 885, 906
Esp3I	CGTCTC	1 cut(s)	573
FaeI	CATG	8 cut(s)	96, 274, 328, 536, 673, 757, 762, 889
FatI	CATG	8 cut(s)	92, 270, 324, 532, 669, 753, 758, 885
FbaI	TGATCA	1 cut(s)	682
Fnu4HI	GCNGC	2 cut(s)	16, 468
FokI	GGATG	3 cut(s)	329, 686, 1098
FriOI	GRGCYC	3 cut(s)	620, 669, 945
Fsp4HI	GCNGC	2 cut(s)	16, 468
FspBI	CTAG	3 cut(s)	543, 704, 747
GluI	GCNGC	2 cut(s)	16, 468
HaeIII	GGCC	5 cut(s)	142, 594, 884, 911, 1031
HapII	CCGG	3 cut(s)	66, 678, 830
HgaI	GACGC	2 cut(s)	523, 555
Hin1I	GRCGYC	1 cut(s)	566
Hin1II	CATG	8 cut(s)	96, 274, 328, 536, 673, 757, 762, 889
HincII	GTYRAC	1 cut(s)	513
HindII	GTYRAC	1 cut(s)	513
HinfI	GANTC	3 cut(s)	38, 807, 826
HpaII	CCGG	3 cut(s)	66, 678, 830
HphI	GGTGA	1 cut(s)	692
Hpy166II	GTNNAC	3 cut(s)	513, 608, 921
Hpy188I	TCNGA	3 cut(s)	43, 370, 843
Hpy188III	TCNNGA	2 cut(s)	670, 686
Hpy8I	GTNNAC	3 cut(s)	513, 608, 921
HpyCH4III	ACNGT	6 cut(s)	31, 84, 109, 236, 589, 902
HpyCH4V	TGCA	6 cut(s)	10, 128, 147, 270, 428, 608
HpyF10VI	GCNNNNNNNGC	4 cut(s)	286, 339, 476, 624
HpyF3I	CTNAG	2 cut(s)	162, 188
Hsp92I	GRCGYC	1 cut(s)	566
Hsp92II	CATG	8 cut(s)	96, 274, 328, 536, 673, 757, 762, 889
KpnI	GGTACC	1 cut(s)	83
Ksp22I	TGATCA	1 cut(s)	682
Kzo9I	GATC	4 cut(s)	337, 682, 933, 1105
LguI	GCTCTTC	2 cut(s)	450, 657
LmnI	GCTCC	2 cut(s)	419, 615
Lsp1109I	GCAGC	2 cut(s)	27, 454
LweI	GCATC	4 cut(s)	286, 351, 415, 526
MaeI	CTAG	3 cut(s)	543, 704, 747
MaeIII	GTNAC	1 cut(s)	320
MalI	GATC	4 cut(s)	339, 684, 935, 1107
MboI	GATC	4 cut(s)	337, 682, 933, 1105
MfeI	CAATTG	2 cut(s)	381, 986
MhlI	GDGCHC	4 cut(s)	610, 620, 669, 945
MlsI	TGGCCA	1 cut(s)	1031
MluCI	AATT	5 cut(s)	130, 381, 405, 953, 986
MluNI	TGGCCA	1 cut(s)	1031
MmeI	TCCRAC	2 cut(s)	379, 1002
Mox20I	TGGCCA	1 cut(s)	1031
Mph1103I	ATGCAT	1 cut(s)	430
MscI	TGGCCA	1 cut(s)	1031
MseI	TTAA	3 cut(s)	362, 404, 1017
MslI	CAYNNNNRTG	2 cut(s)	821, 1042
Msp20I	TGGCCA	1 cut(s)	1031
MspA1I	CMGCKG	1 cut(s)	166
MspCI	CTTAAG	1 cut(s)	1016
MspI	CCGG	3 cut(s)	66, 678, 830
MspR9I	CCNGG	1 cut(s)	779
MunI	CAATTG	2 cut(s)	381, 986
MvaI	CCWGG	1 cut(s)	779
MwoI	GCNNNNNNNGC	4 cut(s)	286, 339, 476, 624
NcoI	CCATGG	2 cut(s)	758, 885
NdeII	GATC	4 cut(s)	337, 682, 933, 1105
NlaIII	CATG	8 cut(s)	96, 274, 328, 536, 673, 757, 762, 889
NlaIV	GGNNCC	3 cut(s)	81, 617, 904
NmuCI	GTSAC	1 cut(s)	320
NsiI	ATGCAT	1 cut(s)	430
NspI	RCATGY	3 cut(s)	274, 328, 757
NspV	TTCGAA	1 cut(s)	693
PaeI	GCATGC	2 cut(s)	274, 757
PagI	TCATGA	1 cut(s)	669
PceI	AGGCCT	2 cut(s)	594, 911
PciI	ACATGT	1 cut(s)	324
PciSI	GCTCTTC	2 cut(s)	450, 657
PfeI	GAWTC	3 cut(s)	38, 807, 826
PkrI	GCNGC	2 cut(s)	17, 469
PscI	ACATGT	1 cut(s)	324
PshBI	ATTAAT	1 cut(s)	404
Psp124BI	GAGCTC	2 cut(s)	669, 945
Psp6I	CCWGG	1 cut(s)	777
PspGI	CCWGG	1 cut(s)	777
PspN4I	GGNNCC	3 cut(s)	81, 617, 904
PspPI	GGNCC	1 cut(s)	848
PvuII	CAGCTG	1 cut(s)	166
RsaI	GTAC	2 cut(s)	81, 329
RsaNI	GTAC	2 cut(s)	80, 328
RseI	CAYNNNNRTG	2 cut(s)	821, 1042
SacI	GAGCTC	2 cut(s)	669, 945
SapI	GCTCTTC	2 cut(s)	450, 657
SaqAI	TTAA	3 cut(s)	362, 404, 1017
SatI	GCNGC	2 cut(s)	16, 468
Sau3AI	GATC	4 cut(s)	337, 682, 933, 1105
Sau96I	GGNCC	1 cut(s)	848
ScrFI	CCNGG	1 cut(s)	779
SduI	GDGCHC	4 cut(s)	610, 620, 669, 945
SetI	ASST	9 cut(s)	168, 424, 462, 669, 677, 726, 801, 945, 1073
SfaNI	GCATC	4 cut(s)	286, 351, 415, 526
SfuI	TTCGAA	1 cut(s)	693
SinI	GGWCC	1 cut(s)	848
SmiMI	CAYNNNNRTG	2 cut(s)	821, 1042
SmlI	CTYRAG	2 cut(s)	725, 1016
SmoI	CTYRAG	2 cut(s)	725, 1016
SpeI	ACTAGT	1 cut(s)	746
SphI	GCATGC	2 cut(s)	274, 757
Sse9I	AATT	5 cut(s)	130, 381, 405, 953, 986
SseBI	AGGCCT	2 cut(s)	594, 911
SsiI	CCGC	2 cut(s)	331, 1089
SspMI	CTAG	3 cut(s)	543, 704, 747
SstI	GAGCTC	2 cut(s)	669, 945
StuI	AGGCCT	2 cut(s)	594, 911
StyD4I	CCNGG	1 cut(s)	777
StyI	CCWWGG	3 cut(s)	758, 885, 906
TaaI	ACNGT	6 cut(s)	31, 84, 109, 236, 589, 902
TaqI	TCGA	7 cut(s)	36, 231, 294, 501, 693, 813, 945
TaqII	GACCGA	2 cut(s)	732, 865
TasI	AATT	5 cut(s)	130, 381, 405, 953, 986
TfiI	GAWTC	3 cut(s)	38, 807, 826
Tru1I	TTAA	3 cut(s)	362, 404, 1017
Tru9I	TTAA	3 cut(s)	362, 404, 1017
TscAI	CASTG	3 cut(s)	12, 114, 291
TseFI	GTSAC	1 cut(s)	320
TseI	GCWGC	2 cut(s)	15, 467
Tsp45I	GTSAC	1 cut(s)	320
TspDTI	ATGAA	7 cut(s)	195, 211, 270, 296, 348, 489, 1100
TspRI	CASTG	3 cut(s)	12, 114, 291
Vha464I	CTTAAG	1 cut(s)	1016
VneI	GTGCAC	1 cut(s)	606
VpaK11BI	GGWCC	1 cut(s)	848
VspI	ATTAAT	1 cut(s)	404
XceI	RCATGY	3 cut(s)	274, 328, 757
XspI	CTAG	3 cut(s)	543, 704, 747
Zsp2I	ATGCAT	1 cut(s)	430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.