Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005579

Physical Location & Seq

Genomic Coordinates Forward (+)

38305160 .. 38307988

Gene Structure 2829 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G457000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGGCAGTGCCTAGCAGCAATATAGCAACCATCCTCGAATCTCAAGGAGTTGAGTTCCTTCTATCTGGTGACAGAAAGGTCCCCTTGTCATCATGTAATGGGAAGACAGTGTGCCTCTTCTTCTCAGCAAATTGGTGTAGGCCTTGCAAGGCTCTTACCCCTCAGCTGGTGAGGCTTTATGATGTGCTTAAAATGGAAGGTAAAGAGTTTGAGATTATCTTCGTCTCCTTCGACCGCGATGAGGAAAAATTTAATGAACACTTCAAGTGCATGCCATGGCTGACAATCCCATTTGATGCAAACCTGCATAAACGATTGAGTGACCTGTACCACGTCGATCGCATCCCATCACTCATTTCATTAAGTTCAGATGGAATATCAGTTGAGGAAGACTTGGTTGGACTGATTGAAGACTATGGAGCTGAGGCATTTCCATTCACTAAGAACAGAAGAGAAGAACTAAAGGCTGCTGATGAAGCGAAGCGCGAAGGGGGAAAACTAGAAGAGCTTTTGGCTCATCAAGGACGAAACTATGTCATGTCTAGTGATGGTAGAGAGGTATCAGTGTCCAAACTTATTGGTAAGACCATAGGCCTTTACTTTGGTGCACATTGGAGCCCTCCTTGCCGCGCCTTCACTTCCAAACTTATAGAAGCATACAACGAGCTCATGGCCTCCAGTGATCAAGACCTCGAAATCATTCTAGTCTCCACAGACCGAGACCTCAAAGAGTTCGAGCTCAACATAAGCTGCATGCCATGGCTTGCCATCCCATACCAAGATAAAACAAGACAAGACCTTTGCAGAATTTTCGACATTAAAGTGATTCCGGCTTTGGTTCTGATTGGACCAGATGGGAAGGCTATTAGCACAAATGGGAAGGCCATGATCTCCTTGTATGGTGCCAAGGCCTTCCCATTTACAGAATTCAGGATCAAAGAGCTGGAGGCAGCTTTGAGAAAAGAAGGAGAGGCGTTGCCTCCTCAAGTGAAGGATATAAAGCATGACCATTTGCTGAAGTTGGACATGGCCAAAGCATATGTATGTGATTATTGCAAGAAGCAGGGGAGGTTCTGGGCATTCTCTTGTGGTGTGTGTGATTATGATCTTCATCCGACTTGTGTAGAAAAGTCATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0042221 GO:0044424 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C1_2 Thioredoxin_8

Protein Analysis

380

Amino Acids

42.86

Weight (kDa)

5.63

Isoelectric Point (pI)

43.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005579)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31240 AT4G31240
fragaria_vesca	FvH4_2g36550 FvH4_2g36550 FvH4_2g36550 FvH4_2g36550
malus_domestica	MD08G1125400.v1.1 MD15G1105200.v1.1
prunus_persica	Prupe.1G457000_v2.0.a1 Prupe.1G457000_v2.0.a1 Prupe.1G457000_v2.0.a1 Prupe.1G457000_v2.0.a1 Prupe.1G457000_v2.0.a1
pyrus_communis	pycom08g10440
rosa_chinensis	RchiOBHm_Chr6g0305301
rosa_laevigata	RLG00000010903
rosa_multiflora	Rmu_ssc0000148.1_g000001
rosa_roxburghii	Rroxscaffold_7G00162920
rosa_rugosa	Rorug06G0339300 Rorug06G0339500
rosa_samantha	Rh6AG451000 Rh6BG450300 Rh6BG450600 Rh6CG464900 Rh6CG465300 Rh6DG451500 Rh6DG451800
rosa_wichuraiana	Rw6G039310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	77
Acc36I	ACCTGC	1 cut(s)	312
AccB1I	GGYRCC	1 cut(s)	902
AccII	CGCG	3 cut(s)	237, 486, 630
AciI	CCGC	2 cut(s)	235, 628
AclWI	GGATC	1 cut(s)	941
AcoI	YGGCCR	1 cut(s)	1029
AcsI	RAATTY	3 cut(s)	248, 807, 926
AcuI	CTGAAG	1 cut(s)	1037
AfaI	GTAC	1 cut(s)	329
AfiI	CCNNNNNNNGG	2 cut(s)	166, 241
AgsI	TTSAA	2 cut(s)	265, 410
AjiI	CACGTC	1 cut(s)	334
AjuI	GAANNNNNNNTTGG	2 cut(s)	381, 413
AluBI	AGCT	8 cut(s)	166, 422, 508, 667, 739, 750, 943, 953
AluI	AGCT	8 cut(s)	166, 422, 508, 667, 739, 750, 943, 953
Alw21I	GWGCWC	3 cut(s)	610, 669, 741
Alw26I	GTCTC	3 cut(s)	229, 712, 714
Alw44I	GTGCAC	1 cut(s)	606
AlwI	GGATC	1 cut(s)	941
AoxI	GGCC	6 cut(s)	140, 592, 672, 882, 909, 1029
ApaLI	GTGCAC	1 cut(s)	606
ApeKI	GCWGC	4 cut(s)	15, 467, 750, 950
ApoI	RAATTY	3 cut(s)	248, 807, 926
ArsI	GACNNNNNNTTYG	2 cut(s)	783, 815
Asp700I	GAANNNNTTC	1 cut(s)	699
AspLEI	GCGC	2 cut(s)	486, 632
AspS9I	GGNCC	2 cut(s)	79, 848
AsuHPI	GGTGA	2 cut(s)	80, 181
AvaII	GGWCC	2 cut(s)	79, 848
BaeGI	GKGCMC	1 cut(s)	610
BalI	TGGCCA	1 cut(s)	1031
BanI	GGYRCC	1 cut(s)	902
BanII	GRGCYC	3 cut(s)	620, 669, 741
BbsI	GAAGAC	3 cut(s)	110, 396, 417
Bbv12I	GWGCWC	3 cut(s)	610, 669, 741
BbvCI	CCTCAGC	2 cut(s)	162, 423
BbvI	GCAGC	4 cut(s)	27, 454, 737, 962
BccI	CCATC	6 cut(s)	38, 355, 365, 542, 776, 848
BcgI	CGANNNNNNTGC	2 cut(s)	793, 827
BclI	TGATCA	1 cut(s)	682
BcoDI	GTCTC	3 cut(s)	229, 712, 714
BfaI	CTAG	4 cut(s)	12, 500, 543, 704
BfuAI	ACCTGC	1 cut(s)	312
BisI	GCNGC	5 cut(s)	16, 468, 628, 751, 951
BlsI	GCNGC	5 cut(s)	17, 469, 629, 752, 952
Bme18I	GGWCC	2 cut(s)	79, 848
BmgBI	CACGTC	1 cut(s)	334
BmgT120I	GGNCC	2 cut(s)	79, 848
BmiI	GGNNCC	3 cut(s)	81, 617, 904
BmsI	GCATC	2 cut(s)	286, 351
BpiI	GAAGAC	3 cut(s)	110, 396, 417
BpmI	CTGGAG	2 cut(s)	661, 965
Bpu10I	CCTNAGC	2 cut(s)	162, 423
BpuEI	CTTGAG	2 cut(s)	27, 969
BsaBI	GATNNNNATC	2 cut(s)	1104, 1110
BsaI	GGTCTC	1 cut(s)	714
BsaJI	CCNNGG	3 cut(s)	275, 758, 906
Bsc4I	CCNNNNNNNGG	2 cut(s)	166, 241
Bse1I	ACTGG	1 cut(s)	678
Bse8I	GATNNNNATC	2 cut(s)	1104, 1110
BseDI	CCNNGG	3 cut(s)	275, 758, 906
BseGI	GGATG	4 cut(s)	30, 342, 768, 1111
BseJI	GATNNNNATC	2 cut(s)	1104, 1110
BseLI	CCNNNNNNNGG	2 cut(s)	166, 241
BseMII	CTCAG	3 cut(s)	138, 176, 414
BseNI	ACTGG	1 cut(s)	678
BseRI	GAGGAG	1 cut(s)	972
BseSI	GKGCMC	1 cut(s)	610
BseXI	GCAGC	4 cut(s)	27, 454, 737, 962
Bsh1236I	CGCG	3 cut(s)	237, 486, 630
Bsh1285I	CGRYCG	2 cut(s)	235, 340
BshFI	GGCC	6 cut(s)	142, 594, 674, 884, 911, 1031
BshNI	GGYRCC	1 cut(s)	902
BsiEI	CGRYCG	2 cut(s)	235, 340
BsiHKAI	GWGCWC	3 cut(s)	610, 669, 741
BsiSI	CCGG	1 cut(s)	830
BslFI	GGGAC	1 cut(s)	65
BslI	CCNNNNNNNGG	2 cut(s)	166, 241
BsmAI	GTCTC	3 cut(s)	229, 712, 714
BsmBI	CGTCTC	1 cut(s)	229
BsmFI	GGGAC	1 cut(s)	65
BsmI	GAATGC	1 cut(s)	1079
BsnI	GGCC	6 cut(s)	142, 594, 674, 884, 911, 1031
Bso31I	GGTCTC	1 cut(s)	714
Bsp1286I	GDGCHC	4 cut(s)	610, 620, 669, 741
Bsp143I	GATC	5 cut(s)	337, 682, 888, 933, 1105
Bsp19I	CCATGG	2 cut(s)	275, 758
BspACI	CCGC	2 cut(s)	235, 628
BspANI	GGCC	6 cut(s)	142, 594, 674, 884, 911, 1031
BspCNI	CTCAG	3 cut(s)	137, 175, 415
BspFNI	CGCG	3 cut(s)	237, 486, 630
BspLI	GGNNCC	3 cut(s)	81, 617, 904
BspMI	ACCTGC	1 cut(s)	312
BspPI	GGATC	1 cut(s)	941
BspQI	GCTCTTC	1 cut(s)	498
BspT107I	GGYRCC	1 cut(s)	902
BspTNI	GGTCTC	1 cut(s)	714
BsrI	ACTGG	1 cut(s)	678
BssECI	CCNNGG	3 cut(s)	275, 758, 906
BssMI	GATC	5 cut(s)	337, 682, 888, 933, 1105
BssT1I	CCWWGG	3 cut(s)	275, 758, 906
Bst4CI	ACNGT	1 cut(s)	109
Bst6I	CTCTTC	3 cut(s)	122, 445, 498
BstC8I	GCNNGC	3 cut(s)	272, 755, 765
BstDEI	CTNAG	4 cut(s)	124, 162, 423, 441
BstDSI	CCRYGG	2 cut(s)	275, 758
BstF5I	GGATG	4 cut(s)	30, 342, 768, 1111
BstFNI	CGCG	3 cut(s)	237, 486, 630
BstHHI	GCGC	2 cut(s)	486, 632
BstKTI	GATC	5 cut(s)	340, 685, 891, 936, 1108
BstMAI	GTCTC	3 cut(s)	229, 712, 714
BstMBI	GATC	5 cut(s)	337, 682, 888, 933, 1105
BstMCI	CGRYCG	2 cut(s)	235, 340
BstMWI	GCNNNNNNNGC	3 cut(s)	172, 476, 624
BstNSI	RCATGY	2 cut(s)	274, 757
BstSLI	GKGCMC	1 cut(s)	610
BstUI	CGCG	3 cut(s)	237, 486, 630
BstV1I	GCAGC	4 cut(s)	27, 454, 737, 962
BstV2I	GAAGAC	3 cut(s)	110, 396, 417
BsuRI	GGCC	6 cut(s)	142, 594, 674, 884, 911, 1031
BtgI	CCRYGG	2 cut(s)	275, 758
BtgZI	GCGATG	1 cut(s)	252
BtrI	CACGTC	1 cut(s)	334
BtsCI	GGATG	4 cut(s)	30, 342, 768, 1111
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	4 cut(s)	12, 114, 570, 685
BveI	ACCTGC	1 cut(s)	312
Cac8I	GCNNGC	3 cut(s)	272, 755, 765
CfoI	GCGC	2 cut(s)	486, 632
Cfr13I	GGNCC	2 cut(s)	79, 848
Csp6I	GTAC	1 cut(s)	328
CviQI	GTAC	1 cut(s)	328
DdeI	CTNAG	4 cut(s)	124, 162, 423, 441
DpnI	GATC	5 cut(s)	339, 684, 890, 935, 1107
DpnII	GATC	5 cut(s)	337, 682, 888, 933, 1105
DrdI	GACNNNNNNGTC	1 cut(s)	77
DseDI	GACNNNNNNGTC	1 cut(s)	77
EaeI	YGGCCR	1 cut(s)	1029
Eam1104I	CTCTTC	3 cut(s)	122, 445, 498
EarI	CTCTTC	3 cut(s)	122, 445, 498
Ecl136II	GAGCTC	2 cut(s)	667, 739
Eco130I	CCWWGG	3 cut(s)	275, 758, 906
Eco147I	AGGCCT	3 cut(s)	142, 594, 911
Eco24I	GRGCYC	3 cut(s)	620, 669, 741
Eco31I	GGTCTC	1 cut(s)	714
Eco47I	GGWCC	2 cut(s)	79, 848
Eco53kI	GAGCTC	2 cut(s)	667, 739
Eco57I	CTGAAG	1 cut(s)	1037
EcoICRI	GAGCTC	2 cut(s)	667, 739
EcoO109I	RGGNCCY	1 cut(s)	79
EcoRI	GAATTC	1 cut(s)	926
EcoT14I	CCWWGG	3 cut(s)	275, 758, 906
EcoT38I	GRGCYC	3 cut(s)	620, 669, 741
ErhI	CCWWGG	3 cut(s)	275, 758, 906
Esp3I	CGTCTC	1 cut(s)	229
FalI	AAGNNNNNCTT	2 cut(s)	68, 100
FaqI	GGGAC	1 cut(s)	65
FauNDI	CATATG	1 cut(s)	1039
FbaI	TGATCA	1 cut(s)	682
Fnu4HI	GCNGC	5 cut(s)	16, 468, 628, 751, 951
FokI	GGATG	4 cut(s)	17, 329, 755, 1098
FriOI	GRGCYC	3 cut(s)	620, 669, 741
Fsp4HI	GCNGC	5 cut(s)	16, 468, 628, 751, 951
FspBI	CTAG	4 cut(s)	12, 500, 543, 704
GlaI	GCGC	2 cut(s)	485, 631
GluI	GCNGC	5 cut(s)	16, 468, 628, 751, 951
GsuI	CTGGAG	2 cut(s)	661, 965
HaeIII	GGCC	6 cut(s)	142, 594, 674, 884, 911, 1031
HapII	CCGG	1 cut(s)	830
HhaI	GCGC	2 cut(s)	486, 632
Hin6I	GCGC	2 cut(s)	484, 630
HinP1I	GCGC	2 cut(s)	484, 630
HinfI	GANTC	2 cut(s)	38, 826
HpaII	CCGG	1 cut(s)	830
HphI	GGTGA	2 cut(s)	80, 181
Hpy166II	GTNNAC	1 cut(s)	608
Hpy188I	TCNGA	3 cut(s)	370, 843, 1116
Hpy188III	TCNNGA	2 cut(s)	686, 931
Hpy8I	GTNNAC	1 cut(s)	608
Hpy99I	CGWCG	1 cut(s)	338
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4IV	ACGT	1 cut(s)	333
HpyCH4V	TGCA	8 cut(s)	147, 270, 299, 307, 608, 753, 804, 1056
HpyF10VI	GCNNNNNNNGC	3 cut(s)	172, 476, 624
HpyF3I	CTNAG	4 cut(s)	124, 162, 423, 441
HpySE526I	ACGT	1 cut(s)	333
HspAI	GCGC	2 cut(s)	484, 630
Ksp22I	TGATCA	1 cut(s)	682
Kzo9I	GATC	5 cut(s)	337, 682, 888, 933, 1105
LguI	GCTCTTC	1 cut(s)	498
LmnI	GCTCC	2 cut(s)	419, 615
Lsp1109I	GCAGC	4 cut(s)	27, 454, 737, 962
LweI	GCATC	2 cut(s)	286, 351
MaeI	CTAG	4 cut(s)	12, 500, 543, 704
MaeII	ACGT	1 cut(s)	333
MaeIII	GTNAC	2 cut(s)	68, 320
MalI	GATC	5 cut(s)	339, 684, 890, 935, 1107
MboI	GATC	5 cut(s)	337, 682, 888, 933, 1105
MhlI	GDGCHC	4 cut(s)	610, 620, 669, 741
MlsI	TGGCCA	1 cut(s)	1031
MluCI	AATT	4 cut(s)	130, 248, 807, 926
MluNI	TGGCCA	1 cut(s)	1031
MmeI	TCCRAC	3 cut(s)	379, 1002, 1139
Mox20I	TGGCCA	1 cut(s)	1031
MroXI	GAANNNNTTC	1 cut(s)	699
MscI	TGGCCA	1 cut(s)	1031
MseI	TTAA	5 cut(s)	189, 252, 362, 819, 1138
MslI	CAYNNNNRTG	2 cut(s)	821, 1042
Msp20I	TGGCCA	1 cut(s)	1031
MspA1I	CMGCKG	1 cut(s)	166
MspI	CCGG	1 cut(s)	830
Mva1269I	GAATGC	1 cut(s)	1079
MvnI	CGCG	3 cut(s)	237, 486, 630
MwoI	GCNNNNNNNGC	3 cut(s)	172, 476, 624
NcoI	CCATGG	2 cut(s)	275, 758
NdeI	CATATG	1 cut(s)	1039
NdeII	GATC	5 cut(s)	337, 682, 888, 933, 1105
NlaIV	GGNNCC	3 cut(s)	81, 617, 904
NmuCI	GTSAC	2 cut(s)	68, 320
NspI	RCATGY	2 cut(s)	274, 757
PaeI	GCATGC	2 cut(s)	274, 757
PceI	AGGCCT	3 cut(s)	142, 594, 911
PciSI	GCTCTTC	1 cut(s)	498
PcsI	WCGNNNNNNNCGW	1 cut(s)	228
PctI	GAATGC	1 cut(s)	1079
PdmI	GAANNNNTTC	1 cut(s)	699
PfeI	GAWTC	2 cut(s)	38, 826
PkrI	GCNGC	5 cut(s)	17, 469, 629, 752, 952
Ple19I	CGATCG	1 cut(s)	340
PpuMI	RGGWCCY	1 cut(s)	79
Psp124BI	GAGCTC	2 cut(s)	669, 741
Psp5II	RGGWCCY	1 cut(s)	79
PspN4I	GGNNCC	3 cut(s)	81, 617, 904
PspPI	GGNCC	2 cut(s)	79, 848
PspPPI	RGGWCCY	1 cut(s)	79
PvuI	CGATCG	1 cut(s)	340
PvuII	CAGCTG	1 cut(s)	166
RsaI	GTAC	1 cut(s)	329
RsaNI	GTAC	1 cut(s)	328
RseI	CAYNNNNRTG	2 cut(s)	821, 1042
SacI	GAGCTC	2 cut(s)	669, 741
SapI	GCTCTTC	1 cut(s)	498
SaqAI	TTAA	5 cut(s)	189, 252, 362, 819, 1138
SatI	GCNGC	5 cut(s)	16, 468, 628, 751, 951
Sau3AI	GATC	5 cut(s)	337, 682, 888, 933, 1105
Sau96I	GGNCC	2 cut(s)	79, 848
SduI	GDGCHC	4 cut(s)	610, 620, 669, 741
SfaNI	GCATC	2 cut(s)	286, 351
SinI	GGWCC	2 cut(s)	79, 848
SmiMI	CAYNNNNRTG	2 cut(s)	821, 1042
SmlI	CTYRAG	2 cut(s)	42, 984
SmoI	CTYRAG	2 cut(s)	42, 984
SphI	GCATGC	2 cut(s)	274, 757
Sse9I	AATT	4 cut(s)	130, 248, 807, 926
SseBI	AGGCCT	3 cut(s)	142, 594, 911
SsiI	CCGC	2 cut(s)	235, 628
SspMI	CTAG	4 cut(s)	12, 500, 543, 704
SstI	GAGCTC	2 cut(s)	669, 741
StuI	AGGCCT	3 cut(s)	142, 594, 911
StyI	CCWWGG	3 cut(s)	275, 758, 906
TaaI	ACNGT	1 cut(s)	109
TaiI	ACGT	1 cut(s)	336
TaqI	TCGA	6 cut(s)	36, 231, 336, 693, 735, 813
TaqII	GACCGA	1 cut(s)	732
TasI	AATT	4 cut(s)	130, 248, 807, 926
TauI	GCSGC	1 cut(s)	630
TfiI	GAWTC	2 cut(s)	38, 826
Tru1I	TTAA	5 cut(s)	189, 252, 362, 819, 1138
Tru9I	TTAA	5 cut(s)	189, 252, 362, 819, 1138
TscAI	CASTG	4 cut(s)	12, 114, 570, 685
TseFI	GTSAC	2 cut(s)	68, 320
TseI	GCWGC	4 cut(s)	15, 467, 750, 950
Tsp45I	GTSAC	2 cut(s)	68, 320
TspDTI	ATGAA	4 cut(s)	270, 348, 489, 1100
TspRI	CASTG	4 cut(s)	12, 114, 570, 685
VneI	GTGCAC	1 cut(s)	606
VpaK11BI	GGWCC	2 cut(s)	79, 848
XapI	RAATTY	3 cut(s)	248, 807, 926
XceI	RCATGY	2 cut(s)	274, 757
XmnI	GAANNNNTTC	1 cut(s)	699
XspI	CTAG	4 cut(s)	12, 500, 543, 704

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.