Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0005579

Physical Location & Seq

Genomic Coordinates Forward (+)

26735868 .. 26738658

Gene Structure 2791 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g36550.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGATAGCAGCAACATAGTAACCGTCCTGGAATCCGAAGGAGTTGAGTTCCTTCTATCTGGTGAAAGAAAGGTACCCTTGTCGTCATGCAATGGGAAGACAGTATGCCTTTTCTTCTCTGCAAATTGGTGTAGGCCTTGCAAGGCCCTGACCCCTCAGCTTGTGAGACTTTATGATACCCTTCGATATGAAGGCAAAGATCTTGAGATTATTTTTGTATCTTTCGACCACGATGAGGACAAATTCAATGCACACTTCAAGTGCATGCCATGGCTGGCAGTCCCATTCGATGTAAACCTGCATAAAAGATTGAGTGACATATACCACGTTGATCGAATCCCATCACTCGTTCCATTGAGTTCAGATAGGATATCAATTGAGGAAGATTTGATTGGATTTATTGAAGACTATGGTGCCGAGGCATTTCCATTCACTAGGAAGAGAAGAGAGGAACTAAAGGCTATAGATGATGCAAAGCGTGAAGGTGGAAAACTTGAAGAGCTTCTGGCACACCAAGGACGAAACTATCTCATGTCTAGGGATGGTAGAGAGATATCAGTATCCGAACTTGTTGGCAAAACCATAGGCCTTTACTTTGGTGCACATTGGAGTCCTCCTTGCCGTTCTTTCACCTCCAAGCTCATAGAAGCATACAGTGAGCTTATGACATCAAATGATGAACTCTTTGAAATCATTTTCGTCTCCACAGACCGAGACCTCAAAGAATTTGAACTAAACATATGCACCATGCCATGGCTTGCCATCCCCTACAATGATAAAACAAGACAAGATCTTTGCCGAATCTTTAACATTAAAGAAATTCCGGCTTTGGTTCTAATCGGACCAGATGGGAAGGCTGTTAGCACAAAGGGGAGGGCTTTGATCTCTTTGTATGGCGCAAAAGCTTTCCCGTTCACAGAGTTGAGGATCAAAGAGCTTGAAGCAGCCTTGGGAAAAGAAGGAGAGGCATTGCCCCCTCAAGTGAAGGATATAAAGCATGACCATATGCTGAAGCTGGACATGGCCAAAGCATATGTATGTGATTTTTGCAAGAAGCAAGGGAGGTTCTGGGCATTTTCGTGCGATGTTTGTGACTATGATCTTCATCCAACTTGCGTAGATAAATCATTTAAGAATTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0042221 GO:0044424 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C1_2 Thioredoxin_8

Protein Analysis

381

Amino Acids

43.38

Weight (kDa)

5.61

Isoelectric Point (pI)

45.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AhpC-TSA	PF00578	23 - 89	5.4e-07	AhpC/TSA family
Thioredoxin_8	PF13905	32 - 122	6.8e-22	Thioredoxin-like
Thioredoxin_8	PF13905	192 - 285	4.8e-24	Thioredoxin-like
C1_2	PF03107	332 - 373	1.6e-08	C1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005579)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31240 AT4G31240
fragaria_vesca	FvH4_2g36550 FvH4_2g36550 FvH4_2g36550 FvH4_2g36550
malus_domestica	MD08G1125400.v1.1 MD15G1105200.v1.1
prunus_persica	Prupe.1G457000_v2.0.a1 Prupe.1G457000_v2.0.a1 Prupe.1G457000_v2.0.a1 Prupe.1G457000_v2.0.a1 Prupe.1G457000_v2.0.a1
pyrus_communis	pycom08g10440
rosa_chinensis	RchiOBHm_Chr6g0305301
rosa_laevigata	RLG00000010903
rosa_multiflora	Rmu_ssc0000148.1_g000001
rosa_roxburghii	Rroxscaffold_7G00162920
rosa_rugosa	Rorug06G0339300 Rorug06G0339500
rosa_samantha	Rh6AG451000 Rh6BG450300 Rh6BG450600 Rh6CG464900 Rh6CG465300 Rh6DG451500 Rh6DG451800
rosa_wichuraiana	Rw6G039310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	306
Acc65I	GGTACC	1 cut(s)	73
AccB1I	GGYRCC	2 cut(s)	73, 413
AccB7I	CCANNNNNTGG	1 cut(s)	753
AclWI	GGATC	1 cut(s)	935
AcoI	YGGCCR	1 cut(s)	1023
AcsI	RAATTY	4 cut(s)	242, 725, 819, 1135
AcuI	CTGAAG	1 cut(s)	1031
AfaI	GTAC	1 cut(s)	75
AfiI	CCNNNNNNNGG	2 cut(s)	235, 753
AgsI	TTSAA	7 cut(s)	247, 259, 404, 497, 689, 731, 941
AjnI	CCWGG	1 cut(s)	27
AjuI	GAANNNNNNNTTGG	2 cut(s)	375, 407
AluBI	AGCT	7 cut(s)	160, 502, 640, 661, 905, 937, 1015
AluI	AGCT	7 cut(s)	160, 502, 640, 661, 905, 937, 1015
Alw21I	GWGCWC	1 cut(s)	604
Alw26I	GTCTC	3 cut(s)	160, 706, 708
Alw44I	GTGCAC	1 cut(s)	600
AlwI	GGATC	1 cut(s)	935
AoxI	GGCC	4 cut(s)	134, 144, 586, 1023
ApaLI	GTGCAC	1 cut(s)	600
ApeKI	GCWGC	2 cut(s)	9, 944
ApoI	RAATTY	4 cut(s)	242, 725, 819, 1135
ArsI	GACNNNNNNTTYG	2 cut(s)	777, 809
Asp700I	GAANNNNTTC	1 cut(s)	501
Asp718I	GGTACC	1 cut(s)	73
AspLEI	GCGC	1 cut(s)	899
AspS9I	GGNCC	2 cut(s)	145, 842
AsuHPI	GGTGA	2 cut(s)	74, 622
AvaII	GGWCC	1 cut(s)	842
BaeGI	GKGCMC	1 cut(s)	604
BaeI	ACNNNNGTAYC	2 cut(s)	65, 98
BalI	TGGCCA	1 cut(s)	1025
BanI	GGYRCC	2 cut(s)	73, 413
BbsI	GAAGAC	2 cut(s)	104, 411
Bbv12I	GWGCWC	1 cut(s)	604
BbvCI	CCTCAGC	1 cut(s)	156
BbvI	GCAGC	2 cut(s)	21, 956
BccI	CCATC	4 cut(s)	349, 536, 770, 842
BceAI	ACGGC	1 cut(s)	606
BciT130I	CCWGG	1 cut(s)	29
BciVI	GTATCC	1 cut(s)	571
BcoDI	GTCTC	3 cut(s)	160, 706, 708
BfaI	CTAG	2 cut(s)	435, 537
BfmI	CTRYAG	1 cut(s)	462
BfuAI	ACCTGC	1 cut(s)	306
BfuI	GTATCC	1 cut(s)	571
BglII	AGATCT	2 cut(s)	199, 790
BisI	GCNGC	2 cut(s)	10, 945
BlsI	GCNGC	2 cut(s)	11, 946
Bme1390I	CCNGG	1 cut(s)	29
Bme18I	GGWCC	1 cut(s)	842
BmgT120I	GGNCC	2 cut(s)	145, 842
BmiI	GGNNCC	2 cut(s)	75, 415
BmrFI	CCNGG	1 cut(s)	29
BmsI	GCATC	1 cut(s)	460
BpiI	GAAGAC	2 cut(s)	104, 411
Bpu10I	CCTNAGC	1 cut(s)	156
BpuEI	CTTGAG	2 cut(s)	224, 963
BsaBI	GATNNNNATC	1 cut(s)	1104
BsaI	GGTCTC	1 cut(s)	708
BsaJI	CCNNGG	5 cut(s)	269, 417, 514, 752, 948
Bsc4I	CCNNNNNNNGG	2 cut(s)	235, 753
Bse3DI	GCAATG	2 cut(s)	97, 968
Bse8I	GATNNNNATC	1 cut(s)	1104
BseBI	CCWGG	1 cut(s)	29
BseDI	CCNNGG	5 cut(s)	269, 417, 514, 752, 948
BseGI	GGATG	3 cut(s)	547, 762, 1105
BseJI	GATNNNNATC	1 cut(s)	1104
BseLI	CCNNNNNNNGG	2 cut(s)	235, 753
BseMI	GCAATG	2 cut(s)	97, 968
BseMII	CTCAG	1 cut(s)	170
BseSI	GKGCMC	1 cut(s)	604
BseXI	GCAGC	2 cut(s)	21, 956
BshFI	GGCC	4 cut(s)	136, 146, 588, 1025
BshNI	GGYRCC	2 cut(s)	73, 413
BsiHKAI	GWGCWC	1 cut(s)	604
BsiSI	CCGG	1 cut(s)	824
BslFI	GGGAC	1 cut(s)	266
BslI	CCNNNNNNNGG	2 cut(s)	235, 753
BsmAI	GTCTC	3 cut(s)	160, 706, 708
BsmBI	CGTCTC	1 cut(s)	706
BsmFI	GGGAC	1 cut(s)	266
BsnI	GGCC	4 cut(s)	136, 146, 588, 1025
Bso31I	GGTCTC	1 cut(s)	708
Bsp1286I	GDGCHC	1 cut(s)	604
Bsp143I	GATC	6 cut(s)	199, 331, 790, 882, 927, 1099
Bsp19I	CCATGG	2 cut(s)	269, 752
BspANI	GGCC	4 cut(s)	136, 146, 588, 1025
BspCNI	CTCAG	1 cut(s)	169
BspLI	GGNNCC	2 cut(s)	75, 415
BspMI	ACCTGC	1 cut(s)	306
BspPI	GGATC	1 cut(s)	935
BspQI	GCTCTTC	1 cut(s)	492
BspT107I	GGYRCC	2 cut(s)	73, 413
BspTNI	GGTCTC	1 cut(s)	708
BsrDI	GCAATG	2 cut(s)	97, 968
BssECI	CCNNGG	5 cut(s)	269, 417, 514, 752, 948
BssMI	GATC	6 cut(s)	199, 331, 790, 882, 927, 1099
BssT1I	CCWWGG	4 cut(s)	269, 514, 752, 948
Bst2UI	CCWGG	1 cut(s)	29
Bst4CI	ACNGT	3 cut(s)	25, 103, 656
Bst6I	CTCTTC	3 cut(s)	434, 439, 492
BstC8I	GCNNGC	3 cut(s)	266, 276, 759
BstDEI	CTNAG	1 cut(s)	156
BstDSI	CCRYGG	2 cut(s)	269, 752
BstF5I	GGATG	3 cut(s)	547, 762, 1105
BstHHI	GCGC	1 cut(s)	899
BstKTI	GATC	6 cut(s)	202, 334, 793, 885, 930, 1102
BstMAI	GTCTC	3 cut(s)	160, 706, 708
BstMBI	GATC	6 cut(s)	199, 331, 790, 882, 927, 1099
BstNI	CCWGG	1 cut(s)	29
BstNSI	RCATGY	1 cut(s)	268
BstSCI	CCNGG	1 cut(s)	27
BstSFI	CTRYAG	1 cut(s)	462
BstSLI	GKGCMC	1 cut(s)	604
BstV1I	GCAGC	2 cut(s)	21, 956
BstV2I	GAAGAC	2 cut(s)	104, 411
BstX2I	RGATCY	2 cut(s)	199, 790
BstYI	RGATCY	2 cut(s)	199, 790
BsuI	GTATCC	1 cut(s)	571
BsuRI	GGCC	4 cut(s)	136, 146, 588, 1025
BtgI	CCRYGG	2 cut(s)	269, 752
BtgZI	GCGATG	1 cut(s)	1098
BtsCI	GGATG	3 cut(s)	547, 762, 1105
BtsIMutI	CAGTG	1 cut(s)	661
BveI	ACCTGC	1 cut(s)	306
Cac8I	GCNNGC	3 cut(s)	266, 276, 759
CfoI	GCGC	1 cut(s)	899
Cfr13I	GGNCC	2 cut(s)	145, 842
Csp6I	GTAC	1 cut(s)	74
CviAII	CATG	8 cut(s)	87, 265, 270, 532, 748, 753, 998, 1021
CviQI	GTAC	1 cut(s)	74
DdeI	CTNAG	1 cut(s)	156
DpnI	GATC	6 cut(s)	201, 333, 792, 884, 929, 1101
DpnII	GATC	6 cut(s)	199, 331, 790, 882, 927, 1099
EaeI	YGGCCR	1 cut(s)	1023
Eam1104I	CTCTTC	3 cut(s)	434, 439, 492
EarI	CTCTTC	3 cut(s)	434, 439, 492
Eco130I	CCWWGG	4 cut(s)	269, 514, 752, 948
Eco147I	AGGCCT	2 cut(s)	136, 588
Eco31I	GGTCTC	1 cut(s)	708
Eco32I	GATATC	2 cut(s)	372, 555
Eco47I	GGWCC	1 cut(s)	842
Eco57I	CTGAAG	1 cut(s)	1031
EcoO109I	RGGNCCY	1 cut(s)	145
EcoRII	CCWGG	1 cut(s)	27
EcoRV	GATATC	2 cut(s)	372, 555
EcoT14I	CCWWGG	4 cut(s)	269, 514, 752, 948
ErhI	CCWWGG	4 cut(s)	269, 514, 752, 948
Esp3I	CGTCTC	1 cut(s)	706
FaeI	CATG	8 cut(s)	90, 268, 273, 535, 751, 756, 1001, 1024
FalI	AAGNNNNNCTT	2 cut(s)	62, 94
FaqI	GGGAC	1 cut(s)	266
FatI	CATG	8 cut(s)	86, 264, 269, 531, 747, 752, 997, 1020
FauNDI	CATATG	3 cut(s)	740, 1005, 1033
Fnu4HI	GCNGC	2 cut(s)	10, 945
FokI	GGATG	3 cut(s)	554, 749, 1092
Fsp4HI	GCNGC	2 cut(s)	10, 945
FspBI	CTAG	2 cut(s)	435, 537
GlaI	GCGC	1 cut(s)	898
GluI	GCNGC	2 cut(s)	10, 945
HaeIII	GGCC	4 cut(s)	136, 146, 588, 1025
HapII	CCGG	1 cut(s)	824
HhaI	GCGC	1 cut(s)	899
Hin1II	CATG	8 cut(s)	90, 268, 273, 535, 751, 756, 1001, 1024
Hin6I	GCGC	1 cut(s)	897
HinP1I	GCGC	1 cut(s)	897
HindIII	AAGCTT	1 cut(s)	903
HinfI	GANTC	4 cut(s)	32, 336, 610, 801
HpaII	CCGG	1 cut(s)	824
HphI	GGTGA	2 cut(s)	74, 622
Hpy166II	GTNNAC	3 cut(s)	295, 602, 915
Hpy188I	TCNGA	4 cut(s)	37, 364, 565, 842
Hpy188III	TCNNGA	1 cut(s)	203
Hpy8I	GTNNAC	3 cut(s)	295, 602, 915
HpyAV	CCTTC	8 cut(s)	32, 62, 185, 191, 476, 847, 953, 979
HpyCH4III	ACNGT	3 cut(s)	25, 103, 656
HpyCH4IV	ACGT	1 cut(s)	327
HpyF3I	CTNAG	1 cut(s)	156
HpySE526I	ACGT	1 cut(s)	327
Hsp92II	CATG	8 cut(s)	90, 268, 273, 535, 751, 756, 1001, 1024
HspAI	GCGC	1 cut(s)	897
KpnI	GGTACC	1 cut(s)	77
Kzo9I	GATC	6 cut(s)	199, 331, 790, 882, 927, 1099
LguI	GCTCTTC	1 cut(s)	492
Lsp1109I	GCAGC	2 cut(s)	21, 956
LweI	GCATC	1 cut(s)	460
MaeI	CTAG	2 cut(s)	435, 537
MaeII	ACGT	1 cut(s)	327
MaeIII	GTNAC	3 cut(s)	19, 314, 1091
MalI	GATC	6 cut(s)	201, 333, 792, 884, 929, 1101
MboI	GATC	6 cut(s)	199, 331, 790, 882, 927, 1099
MboII	GAAGA	8 cut(s)	106, 109, 395, 416, 451, 456, 509, 1094
MfeI	CAATTG	1 cut(s)	375
MflI	RGATCY	2 cut(s)	199, 790
MhlI	GDGCHC	1 cut(s)	604
MlsI	TGGCCA	1 cut(s)	1025
MluCI	AATT	6 cut(s)	124, 242, 375, 725, 819, 1135
MluNI	TGGCCA	1 cut(s)	1025
MlyI	GAGTC	1 cut(s)	619
MmeI	TCCRAC	1 cut(s)	1133
Mox20I	TGGCCA	1 cut(s)	1025
MroXI	GAANNNNTTC	1 cut(s)	501
MscI	TGGCCA	1 cut(s)	1025
MseI	TTAA	3 cut(s)	807, 813, 1131
MslI	CAYNNNNRTG	2 cut(s)	1036, 1078
Msp20I	TGGCCA	1 cut(s)	1025
MspI	CCGG	1 cut(s)	824
MspR9I	CCNGG	1 cut(s)	29
MunI	CAATTG	1 cut(s)	375
MvaI	CCWGG	1 cut(s)	29
NcoI	CCATGG	2 cut(s)	269, 752
NdeI	CATATG	3 cut(s)	740, 1005, 1033
NdeII	GATC	6 cut(s)	199, 331, 790, 882, 927, 1099
NlaIII	CATG	8 cut(s)	90, 268, 273, 535, 751, 756, 1001, 1024
NlaIV	GGNNCC	2 cut(s)	75, 415
NmeAIII	GCCGAG	1 cut(s)	442
NmuCI	GTSAC	2 cut(s)	314, 1091
NspI	RCATGY	1 cut(s)	268
PaeI	GCATGC	1 cut(s)	268
PceI	AGGCCT	2 cut(s)	136, 588
PciSI	GCTCTTC	1 cut(s)	492
PdmI	GAANNNNTTC	1 cut(s)	501
PfeI	GAWTC	3 cut(s)	32, 336, 801
PflMI	CCANNNNNTGG	1 cut(s)	753
PfoI	TCCNGGA	1 cut(s)	27
PkrI	GCNGC	2 cut(s)	11, 946
PleI	GAGTC	1 cut(s)	618
PpsI	GAGTC	1 cut(s)	618
Psp6I	CCWGG	1 cut(s)	27
PspGI	CCWGG	1 cut(s)	27
PspN4I	GGNNCC	2 cut(s)	75, 415
PspPI	GGNCC	2 cut(s)	145, 842
PsuI	RGATCY	2 cut(s)	199, 790
RsaI	GTAC	1 cut(s)	75
RsaNI	GTAC	1 cut(s)	74
RseI	CAYNNNNRTG	2 cut(s)	1036, 1078
SapI	GCTCTTC	1 cut(s)	492
SaqAI	TTAA	3 cut(s)	807, 813, 1131
SatI	GCNGC	2 cut(s)	10, 945
Sau3AI	GATC	6 cut(s)	199, 331, 790, 882, 927, 1099
Sau96I	GGNCC	2 cut(s)	145, 842
SchI	GAGTC	1 cut(s)	619
ScrFI	CCNGG	1 cut(s)	29
SduI	GDGCHC	1 cut(s)	604
SfaNI	GCATC	1 cut(s)	460
SfcI	CTRYAG	1 cut(s)	462
SinI	GGWCC	1 cut(s)	842
SmiMI	CAYNNNNRTG	2 cut(s)	1036, 1078
SmlI	CTYRAG	2 cut(s)	203, 978
SmoI	CTYRAG	2 cut(s)	203, 978
SphI	GCATGC	1 cut(s)	268
Sse9I	AATT	6 cut(s)	124, 242, 375, 725, 819, 1135
SseBI	AGGCCT	2 cut(s)	136, 588
SspMI	CTAG	2 cut(s)	435, 537
StuI	AGGCCT	2 cut(s)	136, 588
StyD4I	CCNGG	1 cut(s)	27
StyI	CCWWGG	4 cut(s)	269, 514, 752, 948
TaaI	ACNGT	3 cut(s)	25, 103, 656
TaiI	ACGT	1 cut(s)	330
TaqI	TCGA	4 cut(s)	184, 225, 288, 334
TaqII	GACCGA	1 cut(s)	726
TasI	AATT	6 cut(s)	124, 242, 375, 725, 819, 1135
TfiI	GAWTC	3 cut(s)	32, 336, 801
Tru1I	TTAA	3 cut(s)	807, 813, 1131
Tru9I	TTAA	3 cut(s)	807, 813, 1131
TscAI	CASTG	1 cut(s)	661
TseFI	GTSAC	2 cut(s)	314, 1091
TseI	GCWGC	2 cut(s)	9, 944
Tsp45I	GTSAC	2 cut(s)	314, 1091
TspDTI	ATGAA	3 cut(s)	204, 693, 1094
TspRI	CASTG	1 cut(s)	661
Van91I	CCANNNNNTGG	1 cut(s)	753
VneI	GTGCAC	1 cut(s)	600
VpaK11BI	GGWCC	1 cut(s)	842
XapI	RAATTY	4 cut(s)	242, 725, 819, 1135
XceI	RCATGY	1 cut(s)	268
XmnI	GAANNNNTTC	1 cut(s)	501
XspI	CTAG	2 cut(s)	435, 537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.