AT4G31720

TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0006093
Physical Location & Seq
Reverse (-)
15353796 .. 15356431
2636 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G31720.1

Sequence Viewer

Length: 405 bp
ATGAATCACGGCCAACAATCTGGTGAGGCAAAGCATGAAGATGATGCTGCTCTTACAGAGTTCCTTGCTTCTCTGATGGATTATACTCCTACTATTCCTGATGATTTAGTGGAGCACTACTTGGCTAAGAGTGGATTTCAGTGCCCCGACGTACGATTGATAAGGCTAGTTGCTGTGGCTACACAAAAGTTTGTTGCAGATGTTGCCAGTGACGCCCTTCAGCATTGCAAGGCTAGACCAGCACCAGTTGTGAAAGACAAAAAACAGCAAAAGGATAAGCGTTTGGTATTGACAATGGAAGATCTTTCAAAAGCTTTGCGTGAGTATGGTGTGAACGTGAAGCATCCAGAATATTTTGCTGATAGCCCTTCGACTGGAATGGACCCTGCAACAAGGGACGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000082 GO:0000123 GO:0000125 GO:0000278 GO:0000428 GO:0001889 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003713 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005737 GO:0006139 GO:0006325 GO:0006351 GO:0006352 GO:0006355 GO:0006366 GO:0006367 GO:0006464 GO:0006473 GO:0006475 GO:0006508 GO:0006725 GO:0006807 GO:0006915 GO:0006996 GO:0007049 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008219 GO:0009058 GO:0009059 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0012501 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0016578 GO:0016579 GO:0016591 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0019899 GO:0022402 GO:0022607 GO:0030154 GO:0030331 GO:0030855 GO:0030880 GO:0030914 GO:0031248 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0033276 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0035257 GO:0035258 GO:0035264 GO:0036211 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043933 GO:0043966 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044770 GO:0044772 GO:0044798 GO:0044843 GO:0045935 GO:0046483 GO:0048471 GO:0048513 GO:0048518 GO:0048522 GO:0048589 GO:0048731 GO:0048732 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051098 GO:0051101 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051259 GO:0051260 GO:0051276 GO:0051427 GO:0055029 GO:0060255 GO:0060429 GO:0061008 GO:0061695 GO:0065003 GO:0065007 GO:0065009 GO:0070013 GO:0070063 GO:0070365 GO:0070461 GO:0070646 GO:0070647 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1902493 GO:1902494 GO:1902680 GO:1903047 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 ko05168 map03022 map05168
Pfam Domains
Protein Families
TFIID_30kDa

Protein Analysis

134

Amino Acids

14.91

Weight (kDa)

5.5

Isoelectric Point (pI)

38.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAF10 PF03540 18 - 119 2.1e-41 Transcription initiation factor TFIID 23-30kDa subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 10
AcuI CTGAAG 1 cut(s) 203
AcyI GRCGYC 1 cut(s) 213
AfaI GTAC 1 cut(s) 153
AfiI CCNNNNNNNGG 1 cut(s) 374
AgsI TTSAA 1 cut(s) 309
AluBI AGCT 1 cut(s) 314
AluI AGCT 1 cut(s) 314
Alw21I GWGCWC 1 cut(s) 117
AoxI GGCC 1 cut(s) 10
ApeKI GCWGC 1 cut(s) 47
AspS9I GGNCC 1 cut(s) 382
AsuHPI GGTGA 1 cut(s) 35
AvaII GGWCC 1 cut(s) 382
BaeGI GKGCMC 1 cut(s) 146
Bbv12I GWGCWC 1 cut(s) 117
BbvI GCAGC 1 cut(s) 34
BccI CCATC 1 cut(s) 70
BceAI ACGGC 1 cut(s) 25
BfaI CTAG 2 cut(s) 167, 234
BglII AGATCT 1 cut(s) 301
BisI GCNGC 1 cut(s) 48
BlsI GCNGC 1 cut(s) 49
Bme18I GGWCC 1 cut(s) 382
BmgT120I GGNCC 1 cut(s) 382
BmiI GGNNCC 1 cut(s) 384
BmsI GCATC 2 cut(s) 34, 352
BsaHI GRCGYC 1 cut(s) 213
Bsc4I CCNNNNNNNGG 1 cut(s) 374
Bse1I ACTGG 3 cut(s) 207, 245, 379
Bse3DI GCAATG 1 cut(s) 223
BseGI GGATG 1 cut(s) 343
BseLI CCNNNNNNNGG 1 cut(s) 374
BseMI GCAATG 1 cut(s) 223
BseNI ACTGG 3 cut(s) 207, 245, 379
BseSI GKGCMC 1 cut(s) 146
BseXI GCAGC 1 cut(s) 34
BshFI GGCC 1 cut(s) 12
BsiHKAI GWGCWC 1 cut(s) 117
BsiWI CGTACG 1 cut(s) 151
BslI CCNNNNNNNGG 1 cut(s) 374
BsnI GGCC 1 cut(s) 12
Bsp1286I GDGCHC 2 cut(s) 117, 146
Bsp143I GATC 1 cut(s) 301
BspANI GGCC 1 cut(s) 12
BspLI GGNNCC 1 cut(s) 384
BsrDI GCAATG 1 cut(s) 223
BsrI ACTGG 3 cut(s) 207, 245, 379
BssMI GATC 1 cut(s) 301
BssNI GRCGYC 1 cut(s) 213
BstACI GRCGYC 1 cut(s) 213
BstAPI GCANNNNNTGC 1 cut(s) 203
BstDEI CTNAG 1 cut(s) 126
BstF5I GGATG 1 cut(s) 343
BstKTI GATC 1 cut(s) 304
BstMBI GATC 1 cut(s) 301
BstMWI GCNNNNNNNGC 3 cut(s) 203, 212, 239
BstSLI GKGCMC 1 cut(s) 146
BstV1I GCAGC 1 cut(s) 34
BstX2I RGATCY 1 cut(s) 301
BstXI CCANNNNNNTGG 1 cut(s) 20
BstYI RGATCY 1 cut(s) 301
BsuRI GGCC 1 cut(s) 12
BtsCI GGATG 1 cut(s) 343
BtsIMutI CAGTG 2 cut(s) 146, 214
Cfr13I GGNCC 1 cut(s) 382
CseI GACGC 1 cut(s) 221
Csp6I GTAC 1 cut(s) 152
CviAII CATG 1 cut(s) 35
CviJI RGCY 7 cut(s) 12, 125, 166, 179, 233, 314, 366
CviKI_1 RGCY 7 cut(s) 12, 125, 166, 179, 233, 314, 366
CviQI GTAC 1 cut(s) 152
DdeI CTNAG 1 cut(s) 126
DpnI GATC 1 cut(s) 303
DpnII GATC 1 cut(s) 301
EaeI YGGCCR 1 cut(s) 10
Eco47I GGWCC 1 cut(s) 382
Eco57I CTGAAG 1 cut(s) 203
FaeI CATG 1 cut(s) 38
FaiI YATR 3 cut(s) 36, 84, 327
FatI CATG 1 cut(s) 34
Fnu4HI GCNGC 1 cut(s) 48
FokI GGATG 1 cut(s) 330
Fsp4HI GCNGC 1 cut(s) 48
FspBI CTAG 2 cut(s) 167, 234
GluI GCNGC 1 cut(s) 48
HaeIII GGCC 1 cut(s) 12
HgaI GACGC 1 cut(s) 221
Hin1I GRCGYC 1 cut(s) 213
Hin1II CATG 1 cut(s) 38
HindIII AAGCTT 1 cut(s) 312
HinfI GANTC 1 cut(s) 4
HphI GGTGA 1 cut(s) 35
Hpy166II GTNNAC 1 cut(s) 334
Hpy188I TCNGA 1 cut(s) 75
Hpy188III TCNNGA 2 cut(s) 98, 347
Hpy8I GTNNAC 1 cut(s) 334
Hpy99I CGWCG 1 cut(s) 152
HpyAV CCTTC 2 cut(s) 227, 378
HpyCH4IV ACGT 2 cut(s) 150, 336
HpyCH4V TGCA 3 cut(s) 197, 228, 389
HpyF10VI GCNNNNNNNGC 3 cut(s) 203, 212, 239
HpyF3I CTNAG 1 cut(s) 126
HpySE526I ACGT 2 cut(s) 150, 336
Hsp92I GRCGYC 1 cut(s) 213
Hsp92II CATG 1 cut(s) 38
Kzo9I GATC 1 cut(s) 301
LmnI GCTCC 1 cut(s) 112
LpnPI CCDG 8 cut(s) 6, 111, 220, 252, 258, 360, 360, 399
Lsp1109I GCAGC 1 cut(s) 34
LweI GCATC 2 cut(s) 34, 352
MaeI CTAG 2 cut(s) 167, 234
MaeII ACGT 2 cut(s) 150, 336
MaeIII GTNAC 1 cut(s) 209
MalI GATC 1 cut(s) 303
MboI GATC 1 cut(s) 301
MboII GAAGA 2 cut(s) 50, 311
MflI RGATCY 1 cut(s) 301
MhlI GDGCHC 2 cut(s) 117, 146
MnlI CCTC 1 cut(s) 19
MslI CAYNNNNRTG 1 cut(s) 39
MwoI GCNNNNNNNGC 3 cut(s) 203, 212, 239
NdeII GATC 1 cut(s) 301
NlaIII CATG 1 cut(s) 38
NlaIV GGNNCC 1 cut(s) 384
NmuCI GTSAC 1 cut(s) 209
PfeI GAWTC 1 cut(s) 4
Pfl23II CGTACG 1 cut(s) 151
PkrI GCNGC 1 cut(s) 49
PspLI CGTACG 1 cut(s) 151
PspN4I GGNNCC 1 cut(s) 384
PspPI GGNCC 1 cut(s) 382
PsuI RGATCY 1 cut(s) 301
RsaI GTAC 1 cut(s) 153
RsaNI GTAC 1 cut(s) 152
RseI CAYNNNNRTG 1 cut(s) 39
SatI GCNGC 1 cut(s) 48
Sau3AI GATC 1 cut(s) 301
Sau96I GGNCC 1 cut(s) 382
SduI GDGCHC 2 cut(s) 117, 146
SetI ASST 3 cut(s) 153, 316, 339
SfaNI GCATC 2 cut(s) 34, 352
SinI GGWCC 1 cut(s) 382
SmiMI CAYNNNNRTG 1 cut(s) 39
SspI AATATT 1 cut(s) 353
SspMI CTAG 2 cut(s) 167, 234
TaiI ACGT 2 cut(s) 153, 339
TaqI TCGA 1 cut(s) 371
TfiI GAWTC 1 cut(s) 4
TscAI CASTG 2 cut(s) 146, 214
TseFI GTSAC 1 cut(s) 209
TseI GCWGC 1 cut(s) 47
Tsp45I GTSAC 1 cut(s) 209
TspDTI ATGAA 2 cut(s) 17, 51
TspRI CASTG 2 cut(s) 146, 214
VpaK11BI GGWCC 1 cut(s) 382
XspI CTAG 2 cut(s) 167, 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.