TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G31720 AT4G31720 AT4G31720 |
| fragaria_vesca | FvH4_2g11240 FvH4_2g11240 |
| malus_domestica | MD08G1049200.v1.1 MD15G1045700.v1.1 |
| prunus_persica | Prupe.1G399400_v2.0.a1 Prupe.1G399400_v2.0.a1 Prupe.1G399400_v2.0.a1 |
| pyrus_communis | pycom08g04110 pycom15g04260 |
| rosa_chinensis | RchiOBHm_Chr2g0161651 RchiOBHm_Chr6g0269591 |
| rosa_laevigata | RLG00000013845 |
| rosa_multiflora | Rmu_sc0003863.1_g000002 |
| rosa_roxburghii | Rroxscaffold_7G00198630 |
| rosa_rugosa | Rorug02G0491400 Rorug02G0491400 Rorug06G0048900 |
| rosa_samantha | Rh2CG541000 Rh2DG579700 Rh6BG174300 Rh6CG168600 Rh6DG160400 |
| rosa_wichuraiana | Rw2G046100 Rw6G014540 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 69, 153 |
| AclWI | GGATC | 2 cut(s) | 407, 420 |
| AcoI | YGGCCR | 1 cut(s) | 144 |
| AcsI | RAATTY | 1 cut(s) | 80 |
| AcuI | CTGAAG | 1 cut(s) | 224 |
| AcyI | GRCGYC | 1 cut(s) | 66 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 337, 404 |
| AgsI | TTSAA | 3 cut(s) | 161, 336, 402 |
| AluBI | AGCT | 2 cut(s) | 127, 263 |
| AluI | AGCT | 2 cut(s) | 127, 263 |
| Alw21I | GWGCWC | 1 cut(s) | 138 |
| AlwI | GGATC | 2 cut(s) | 407, 420 |
| AoxI | GGCC | 1 cut(s) | 144 |
| ApeKI | GCWGC | 1 cut(s) | 48 |
| ApoI | RAATTY | 1 cut(s) | 80 |
| AseI | ATTAAT | 1 cut(s) | 179 |
| AspLEI | GCGC | 1 cut(s) | 309 |
| AsuC2I | CCSGG | 1 cut(s) | 406 |
| AsuHPI | GGTGA | 1 cut(s) | 67 |
| BalI | TGGCCA | 1 cut(s) | 146 |
| BamHI | GGATCC | 1 cut(s) | 412 |
| BbsI | GAAGAC | 1 cut(s) | 333 |
| Bbv12I | GWGCWC | 1 cut(s) | 138 |
| BbvI | GCAGC | 1 cut(s) | 60 |
| BccI | CCATC | 1 cut(s) | 316 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 68, 102 |
| BcnI | CCSGG | 1 cut(s) | 406 |
| BfmI | CTRYAG | 1 cut(s) | 267 |
| BfoI | RGCGCY | 1 cut(s) | 310 |
| BisI | GCNGC | 3 cut(s) | 49, 69, 154 |
| BlsI | GCNGC | 3 cut(s) | 50, 70, 155 |
| Bme1390I | CCNGG | 1 cut(s) | 406 |
| BmiI | GGNNCC | 1 cut(s) | 414 |
| BmrFI | CCNGG | 1 cut(s) | 406 |
| BmsI | GCATC | 2 cut(s) | 223, 428 |
| BpiI | GAAGAC | 1 cut(s) | 333 |
| BpuMI | CCSGG | 1 cut(s) | 406 |
| BsaAI | YACGTR | 1 cut(s) | 347 |
| BsaHI | GRCGYC | 1 cut(s) | 66 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 337, 404 |
| Bse3DI | GCAATG | 1 cut(s) | 251 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 337, 404 |
| BseMI | GCAATG | 1 cut(s) | 251 |
| BseMII | CTCAG | 1 cut(s) | 210 |
| BseXI | GCAGC | 1 cut(s) | 60 |
| BshFI | GGCC | 1 cut(s) | 146 |
| BsiHKAI | GWGCWC | 1 cut(s) | 138 |
| BsiSI | CCGG | 1 cut(s) | 405 |
| BslFI | GGGAC | 1 cut(s) | 299 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 337, 404 |
| BsmFI | GGGAC | 1 cut(s) | 299 |
| BsnI | GGCC | 1 cut(s) | 146 |
| Bsp1286I | GDGCHC | 1 cut(s) | 138 |
| Bsp143I | GATC | 1 cut(s) | 412 |
| BspACI | CCGC | 2 cut(s) | 69, 153 |
| BspANI | GGCC | 1 cut(s) | 146 |
| BspCNI | CTCAG | 1 cut(s) | 211 |
| BspLI | GGNNCC | 1 cut(s) | 414 |
| BspPI | GGATC | 2 cut(s) | 407, 420 |
| BspQI | GCTCTTC | 1 cut(s) | 243 |
| BsrDI | GCAATG | 1 cut(s) | 251 |
| BssMI | GATC | 1 cut(s) | 412 |
| BssNI | GRCGYC | 1 cut(s) | 66 |
| Bst6I | CTCTTC | 1 cut(s) | 243 |
| BstACI | GRCGYC | 1 cut(s) | 66 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 233 |
| BstBAI | YACGTR | 1 cut(s) | 347 |
| BstC8I | GCNNGC | 1 cut(s) | 53 |
| BstDEI | CTNAG | 1 cut(s) | 219 |
| BstH2I | RGCGCY | 1 cut(s) | 310 |
| BstHHI | GCGC | 1 cut(s) | 309 |
| BstKTI | GATC | 1 cut(s) | 415 |
| BstMBI | GATC | 1 cut(s) | 412 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 48, 133, 162, 233, 260 |
| BstSCI | CCNGG | 1 cut(s) | 404 |
| BstSFI | CTRYAG | 1 cut(s) | 267 |
| BstV1I | GCAGC | 1 cut(s) | 60 |
| BstV2I | GAAGAC | 1 cut(s) | 333 |
| BstX2I | RGATCY | 1 cut(s) | 412 |
| BstYI | RGATCY | 1 cut(s) | 412 |
| BsuRI | GGCC | 1 cut(s) | 146 |
| Cac8I | GCNNGC | 1 cut(s) | 53 |
| CfoI | GCGC | 1 cut(s) | 309 |
| CseI | GACGC | 1 cut(s) | 74 |
| CviJI | RGCY | 6 cut(s) | 127, 146, 156, 187, 263, 396 |
| CviKI_1 | RGCY | 6 cut(s) | 127, 146, 156, 187, 263, 396 |
| DdeI | CTNAG | 1 cut(s) | 219 |
| DpnI | GATC | 1 cut(s) | 414 |
| DpnII | GATC | 1 cut(s) | 412 |
| EaeI | YGGCCR | 1 cut(s) | 144 |
| Eam1104I | CTCTTC | 1 cut(s) | 243 |
| EarI | CTCTTC | 1 cut(s) | 243 |
| Eco57I | CTGAAG | 1 cut(s) | 224 |
| FaiI | YATR | 4 cut(s) | 9, 105, 116, 357 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 247, 279 |
| FaqI | GGGAC | 1 cut(s) | 299 |
| Fnu4HI | GCNGC | 3 cut(s) | 49, 69, 154 |
| Fsp4HI | GCNGC | 3 cut(s) | 49, 69, 154 |
| GlaI | GCGC | 1 cut(s) | 308 |
| GluI | GCNGC | 3 cut(s) | 49, 69, 154 |
| HaeII | RGCGCY | 1 cut(s) | 310 |
| HaeIII | GGCC | 1 cut(s) | 146 |
| HapII | CCGG | 1 cut(s) | 405 |
| HgaI | GACGC | 1 cut(s) | 74 |
| HhaI | GCGC | 1 cut(s) | 309 |
| Hin1I | GRCGYC | 1 cut(s) | 66 |
| Hin6I | GCGC | 1 cut(s) | 307 |
| HinP1I | GCGC | 1 cut(s) | 307 |
| HindIII | AAGCTT | 1 cut(s) | 261 |
| HpaII | CCGG | 1 cut(s) | 405 |
| HphI | GGTGA | 1 cut(s) | 67 |
| Hpy188I | TCNGA | 1 cut(s) | 220 |
| Hpy188III | TCNNGA | 1 cut(s) | 423 |
| Hpy99I | CGWCG | 3 cut(s) | 68, 125, 173 |
| HpyAV | CCTTC | 2 cut(s) | 38, 408 |
| HpyCH4IV | ACGT | 2 cut(s) | 171, 346 |
| HpyCH4V | TGCA | 3 cut(s) | 227, 249, 419 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 48, 133, 162, 233, 260 |
| HpyF3I | CTNAG | 1 cut(s) | 219 |
| HpySE526I | ACGT | 2 cut(s) | 171, 346 |
| Hsp92I | GRCGYC | 1 cut(s) | 66 |
| HspAI | GCGC | 1 cut(s) | 307 |
| Kzo9I | GATC | 1 cut(s) | 412 |
| LguI | GCTCTTC | 1 cut(s) | 243 |
| LmnI | GCTCC | 1 cut(s) | 133 |
| LpnPI | CCDG | 7 cut(s) | 32, 37, 38, 44, 173, 418, 429 |
| Lsp1109I | GCAGC | 1 cut(s) | 60 |
| LweI | GCATC | 2 cut(s) | 223, 428 |
| MaeII | ACGT | 2 cut(s) | 171, 346 |
| MaeIII | GTNAC | 1 cut(s) | 342 |
| MalI | GATC | 1 cut(s) | 414 |
| MboI | GATC | 1 cut(s) | 412 |
| MboII | GAAGA | 2 cut(s) | 230, 338 |
| MflI | RGATCY | 1 cut(s) | 412 |
| MhlI | GDGCHC | 1 cut(s) | 138 |
| MlsI | TGGCCA | 1 cut(s) | 146 |
| MluCI | AATT | 2 cut(s) | 80, 180 |
| MluNI | TGGCCA | 1 cut(s) | 146 |
| MmeI | TCCRAC | 1 cut(s) | 390 |
| MnlI | CCTC | 2 cut(s) | 83, 214 |
| Mox20I | TGGCCA | 1 cut(s) | 146 |
| MscI | TGGCCA | 1 cut(s) | 146 |
| MseI | TTAA | 3 cut(s) | 95, 179, 363 |
| Msp20I | TGGCCA | 1 cut(s) | 146 |
| MspI | CCGG | 1 cut(s) | 405 |
| MspR9I | CCNGG | 1 cut(s) | 406 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 48, 133, 162, 233, 260 |
| NciI | CCSGG | 1 cut(s) | 406 |
| NdeII | GATC | 1 cut(s) | 412 |
| NlaIV | GGNNCC | 1 cut(s) | 414 |
| PciSI | GCTCTTC | 1 cut(s) | 243 |
| PkrI | GCNGC | 3 cut(s) | 50, 70, 155 |
| Ppu21I | YACGTR | 1 cut(s) | 347 |
| PshBI | ATTAAT | 1 cut(s) | 179 |
| PspN4I | GGNNCC | 1 cut(s) | 414 |
| PsuI | RGATCY | 1 cut(s) | 412 |
| SapI | GCTCTTC | 1 cut(s) | 243 |
| SaqAI | TTAA | 3 cut(s) | 95, 179, 363 |
| SatI | GCNGC | 3 cut(s) | 49, 69, 154 |
| Sau3AI | GATC | 1 cut(s) | 412 |
| ScrFI | CCNGG | 1 cut(s) | 406 |
| SduI | GDGCHC | 1 cut(s) | 138 |
| SetI | ASST | 6 cut(s) | 129, 174, 225, 265, 333, 349 |
| SfaNI | GCATC | 2 cut(s) | 223, 428 |
| SfcI | CTRYAG | 1 cut(s) | 267 |
| Sse9I | AATT | 2 cut(s) | 80, 180 |
| SsiI | CCGC | 2 cut(s) | 69, 153 |
| SspI | AATATT | 2 cut(s) | 315, 383 |
| StyD4I | CCNGG | 1 cut(s) | 404 |
| TaiI | ACGT | 2 cut(s) | 174, 349 |
| TaqI | TCGA | 2 cut(s) | 38, 175 |
| TasI | AATT | 2 cut(s) | 80, 180 |
| TauI | GCSGC | 2 cut(s) | 71, 156 |
| Tru1I | TTAA | 3 cut(s) | 95, 179, 363 |
| Tru9I | TTAA | 3 cut(s) | 95, 179, 363 |
| TseI | GCWGC | 1 cut(s) | 48 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| VspI | ATTAAT | 1 cut(s) | 179 |
| XapI | RAATTY | 1 cut(s) | 80 |