Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003863.1

Orthogroup ID

OG0006093

Physical Location & Seq

Genomic Coordinates Forward (+)

13277 .. 16873

Gene Structure 3597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003863.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

atgaaccataaccaccaaagccagcaatcgagcgaaggcaggcacgacgatgacgaggcatctctctctgagttcctcgcctccctaatggactacactcccaccatacccgacgagcttgtggagcattacttggccaagagcggcttccagtgtcccgacgttcgattaattaggctggtagctgttgccacacaaaagtttgtcgctgaggttgcaactgatgctctacagcaatgcaaagcaagacaggcagcagtggtgaaagacaaaagggacaaacagcaaaaggataagcgcccaatattgactatggaagacctgtcaaaggcattgcgtgagtatggcgtcaatgtgaagcaccaagaatattttgctgacagcccttcaactgggatggatcctgcatcaagagaggaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000082 GO:0000123 GO:0000125 GO:0000278 GO:0000428 GO:0001889 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003713 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005737 GO:0006139 GO:0006325 GO:0006351 GO:0006352 GO:0006355 GO:0006366 GO:0006367 GO:0006464 GO:0006473 GO:0006475 GO:0006508 GO:0006725 GO:0006807 GO:0006915 GO:0006996 GO:0007049 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008219 GO:0009058 GO:0009059 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0012501 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0016578 GO:0016579 GO:0016591 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0019899 GO:0022402 GO:0022607 GO:0030154 GO:0030331 GO:0030855 GO:0030880 GO:0030914 GO:0031248 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0033276 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0035257 GO:0035258 GO:0035264 GO:0036211 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043933 GO:0043966 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044770 GO:0044772 GO:0044798 GO:0044843 GO:0045935 GO:0046483 GO:0048471 GO:0048513 GO:0048518 GO:0048522 GO:0048589 GO:0048731 GO:0048732 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051098 GO:0051101 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051259 GO:0051260 GO:0051276 GO:0051427 GO:0055029 GO:0060255 GO:0060429 GO:0061008 GO:0061695 GO:0065003 GO:0065007 GO:0065009 GO:0070013 GO:0070063 GO:0070365 GO:0070461 GO:0070646 GO:0070647 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1902493 GO:1902494 GO:1902680 GO:1903047 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko05168 map03022 map05168

Pfam Domains

Protein Families

TFIID_30kDa

Protein Analysis

140

Amino Acids

15.82

Weight (kDa)

5.36

Isoelectric Point (pI)

53.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006093)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31720 AT4G31720 AT4G31720
fragaria_vesca	FvH4_2g11240 FvH4_2g11240
malus_domestica	MD08G1049200.v1.1 MD15G1045700.v1.1
prunus_persica	Prupe.1G399400_v2.0.a1 Prupe.1G399400_v2.0.a1 Prupe.1G399400_v2.0.a1
pyrus_communis	pycom08g04110 pycom15g04260
rosa_chinensis	RchiOBHm_Chr2g0161651 RchiOBHm_Chr6g0269591
rosa_laevigata	RLG00000013845
rosa_multiflora	Rmu_sc0003863.1_g000002
rosa_roxburghii	Rroxscaffold_7G00198630
rosa_rugosa	Rorug02G0491400 Rorug02G0491400 Rorug06G0048900
rosa_samantha	Rh2CG541000 Rh2DG579700 Rh6BG174300 Rh6CG168600 Rh6DG160400
rosa_wichuraiana	Rw2G046100 Rw6G014540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	144
AciI	CCGC	1 cut(s)	144
AclWI	GGATC	2 cut(s)	395, 408
AcoI	YGGCCR	1 cut(s)	135
AcyI	GRCGYC	1 cut(s)	348
AfiI	CCNNNNNNNGG	2 cut(s)	328, 392
AgsI	TTSAA	1 cut(s)	390
AjuI	GAANNNNNNNTTGG	2 cut(s)	131, 163
AluBI	AGCT	2 cut(s)	118, 185
AluI	AGCT	2 cut(s)	118, 185
AlwI	GGATC	2 cut(s)	395, 408
AoxI	GGCC	1 cut(s)	135
ApeKI	GCWGC	1 cut(s)	254
AseI	ATTAAT	1 cut(s)	170
AspLEI	GCGC	1 cut(s)	300
AsuHPI	GGTGA	1 cut(s)	274
BalI	TGGCCA	1 cut(s)	137
BamHI	GGATCC	1 cut(s)	400
BbsI	GAAGAC	1 cut(s)	324
BbvCI	CCTCAGC	1 cut(s)	210
BbvI	GCAGC	1 cut(s)	266
BccI	CCATC	1 cut(s)	391
BfmI	CTRYAG	1 cut(s)	230
BfoI	RGCGCY	1 cut(s)	301
BisI	GCNGC	2 cut(s)	145, 255
BlsI	GCNGC	2 cut(s)	146, 256
BmiI	GGNNCC	1 cut(s)	402
BmrI	ACTGGG	1 cut(s)	402
BmsI	GCATC	3 cut(s)	68, 214, 416
BmuI	ACTGGG	1 cut(s)	402
BpiI	GAAGAC	1 cut(s)	324
Bpu10I	CCTNAGC	1 cut(s)	210
BsaHI	GRCGYC	1 cut(s)	348
Bsc4I	CCNNNNNNNGG	2 cut(s)	328, 392
Bse1I	ACTGG	2 cut(s)	151, 397
Bse3DI	GCAATG	2 cut(s)	242, 332
BseGI	GGATG	1 cut(s)	402
BseLI	CCNNNNNNNGG	2 cut(s)	328, 392
BseMI	GCAATG	2 cut(s)	242, 332
BseMII	CTCAG	2 cut(s)	60, 201
BseNI	ACTGG	2 cut(s)	151, 397
BseXI	GCAGC	1 cut(s)	266
BshFI	GGCC	1 cut(s)	137
BslFI	GGGAC	2 cut(s)	141, 290
BslI	CCNNNNNNNGG	2 cut(s)	328, 392
BsmFI	GGGAC	2 cut(s)	141, 290
BsnI	GGCC	1 cut(s)	137
Bsp143I	GATC	1 cut(s)	400
BspACI	CCGC	1 cut(s)	144
BspANI	GGCC	1 cut(s)	137
BspCNI	CTCAG	2 cut(s)	61, 202
BspLI	GGNNCC	1 cut(s)	402
BspPI	GGATC	2 cut(s)	395, 408
BsrBI	CCGCTC	1 cut(s)	144
BsrDI	GCAATG	2 cut(s)	242, 332
BsrI	ACTGG	2 cut(s)	151, 397
BssMI	GATC	1 cut(s)	400
BssNI	GRCGYC	1 cut(s)	348
BstACI	GRCGYC	1 cut(s)	348
BstAPI	GCANNNNNTGC	1 cut(s)	224
BstC8I	GCNNGC	2 cut(s)	23, 41
BstDEI	CTNAG	2 cut(s)	69, 210
BstENI	CCTNNNNNAGG	1 cut(s)	326
BstF5I	GGATG	1 cut(s)	402
BstH2I	RGCGCY	1 cut(s)	301
BstHHI	GCGC	1 cut(s)	300
BstKTI	GATC	1 cut(s)	403
BstMBI	GATC	1 cut(s)	400
BstMWI	GCNNNNNNNGC	4 cut(s)	124, 215, 224, 251
BstSFI	CTRYAG	1 cut(s)	230
BstV1I	GCAGC	1 cut(s)	266
BstV2I	GAAGAC	1 cut(s)	324
BstX2I	RGATCY	1 cut(s)	400
BstYI	RGATCY	1 cut(s)	400
BsuRI	GGCC	1 cut(s)	137
BtsCI	GGATG	1 cut(s)	402
BtsI	GCAGTG	1 cut(s)	264
BtsIMutI	CAGTG	2 cut(s)	158, 264
Cac8I	GCNNGC	2 cut(s)	23, 41
CfoI	GCGC	1 cut(s)	300
CseI	GACGC	1 cut(s)	337
CviJI	RGCY	7 cut(s)	21, 118, 137, 147, 178, 185, 384
CviKI_1	RGCY	7 cut(s)	21, 118, 137, 147, 178, 185, 384
DdeI	CTNAG	2 cut(s)	69, 210
DpnI	GATC	1 cut(s)	402
DpnII	GATC	1 cut(s)	400
EaeI	YGGCCR	1 cut(s)	135
EcoNI	CCTNNNNNAGG	1 cut(s)	326
FaiI	YATR	4 cut(s)	9, 107, 314, 345
FalI	AAGNNNNNCTT	2 cut(s)	131, 163
FaqI	GGGAC	2 cut(s)	141, 290
Fnu4HI	GCNGC	2 cut(s)	145, 255
FokI	GGATG	1 cut(s)	409
Fsp4HI	GCNGC	2 cut(s)	145, 255
GlaI	GCGC	1 cut(s)	299
GluI	GCNGC	2 cut(s)	145, 255
HaeII	RGCGCY	1 cut(s)	301
HaeIII	GGCC	1 cut(s)	137
HgaI	GACGC	1 cut(s)	337
HhaI	GCGC	1 cut(s)	300
Hin1I	GRCGYC	1 cut(s)	348
Hin6I	GCGC	1 cut(s)	298
HinP1I	GCGC	1 cut(s)	298
HphI	GGTGA	1 cut(s)	274
Hpy188I	TCNGA	1 cut(s)	70
Hpy188III	TCNNGA	2 cut(s)	158, 411
Hpy99I	CGWCG	3 cut(s)	50, 116, 164
HpyAV	CCTTC	2 cut(s)	29, 396
HpyCH4IV	ACGT	1 cut(s)	162
HpyCH4V	TGCA	3 cut(s)	218, 240, 407
HpyF10VI	GCNNNNNNNGC	4 cut(s)	124, 215, 224, 251
HpyF3I	CTNAG	2 cut(s)	69, 210
HpySE526I	ACGT	1 cut(s)	162
Hsp92I	GRCGYC	1 cut(s)	348
HspAI	GCGC	1 cut(s)	298
Kzo9I	GATC	1 cut(s)	400
LmnI	GCTCC	1 cut(s)	124
LpnPI	CCDG	8 cut(s)	25, 35, 164, 164, 236, 335, 378, 417
Lsp1109I	GCAGC	1 cut(s)	266
LweI	GCATC	3 cut(s)	68, 214, 416
MaeII	ACGT	1 cut(s)	162
MalI	GATC	1 cut(s)	402
MbiI	CCGCTC	1 cut(s)	144
MboI	GATC	1 cut(s)	400
MboII	GAAGA	1 cut(s)	329
MflI	RGATCY	1 cut(s)	400
MlsI	TGGCCA	1 cut(s)	137
MluCI	AATT	1 cut(s)	171
MluNI	TGGCCA	1 cut(s)	137
MnlI	CCTC	5 cut(s)	49, 86, 91, 205, 409
Mox20I	TGGCCA	1 cut(s)	137
MscI	TGGCCA	1 cut(s)	137
MseI	TTAA	1 cut(s)	170
MslI	CAYNNNNRTG	1 cut(s)	48
Msp20I	TGGCCA	1 cut(s)	137
MwoI	GCNNNNNNNGC	4 cut(s)	124, 215, 224, 251
NdeII	GATC	1 cut(s)	400
NlaIV	GGNNCC	1 cut(s)	402
PcsI	WCGNNNNNNNCGW	1 cut(s)	51
PkrI	GCNGC	2 cut(s)	146, 256
PshBI	ATTAAT	1 cut(s)	170
PspN4I	GGNNCC	1 cut(s)	402
PsuI	RGATCY	1 cut(s)	400
RseI	CAYNNNNRTG	1 cut(s)	48
SaqAI	TTAA	1 cut(s)	170
SatI	GCNGC	2 cut(s)	145, 255
Sau3AI	GATC	1 cut(s)	400
SetI	ASST	5 cut(s)	120, 165, 187, 216, 324
SfaNI	GCATC	3 cut(s)	68, 214, 416
SfcI	CTRYAG	1 cut(s)	230
SmiMI	CAYNNNNRTG	1 cut(s)	48
Sse9I	AATT	1 cut(s)	171
SsiI	CCGC	1 cut(s)	144
SspI	AATATT	2 cut(s)	306, 371
TaiI	ACGT	1 cut(s)	165
TaqI	TCGA	2 cut(s)	29, 166
TasI	AATT	1 cut(s)	171
TauI	GCSGC	1 cut(s)	147
Tru1I	TTAA	1 cut(s)	170
Tru9I	TTAA	1 cut(s)	170
TscAI	CASTG	2 cut(s)	158, 264
TseI	GCWGC	1 cut(s)	254
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	158, 264
VspI	ATTAAT	1 cut(s)	170
XagI	CCTNNNNNAGG	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.