Rh2CG541000

TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0006093
Physical Location & Seq
Forward (+)
71851361 .. 71944171
92811 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG541000.1

Sequence Viewer

Length: 375 bp
ATGAAGCATACCCAAACCCAGCAATCGAGAGAAGGCAGGCACGATGATGACGACGCATCTCTCTCTCAATTCCTTGCCTCCCTAATGGACTACACTCCCACCATACCTGACGAGCTTGTGGAGCATTACTTGGCCAAAACCGGCTTTCAGTCTCCCGACTTTCGATTAATTAGGCTGGTAGCTGTTGCCACACAAAAGTTTGTCGCTGAGGTTGCAACTGATGCTCTACAGCAATGCAAAGCAAGACAGGCAGCAGTGGTGAAAGACAAAAGGGACAAACAGCAAAAGGATAAGCGCCCAATATTGACTATAGAAGATCTGTCAAAGGCATTGCATGAGGTAATAAGGATAGTCTTTCCAATCACTTTATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000082 GO:0000123 GO:0000125 GO:0000278 GO:0000428 GO:0001889 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003713 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005737 GO:0006139 GO:0006325 GO:0006351 GO:0006352 GO:0006355 GO:0006366 GO:0006367 GO:0006464 GO:0006473 GO:0006475 GO:0006508 GO:0006725 GO:0006807 GO:0006915 GO:0006996 GO:0007049 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008219 GO:0009058 GO:0009059 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0012501 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0016578 GO:0016579 GO:0016591 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0019899 GO:0022402 GO:0022607 GO:0030154 GO:0030331 GO:0030855 GO:0030880 GO:0030914 GO:0031248 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0033276 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0035257 GO:0035258 GO:0035264 GO:0036211 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043933 GO:0043966 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044770 GO:0044772 GO:0044798 GO:0044843 GO:0045935 GO:0046483 GO:0048471 GO:0048513 GO:0048518 GO:0048522 GO:0048589 GO:0048731 GO:0048732 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051098 GO:0051101 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051259 GO:0051260 GO:0051276 GO:0051427 GO:0055029 GO:0060255 GO:0060429 GO:0061008 GO:0061695 GO:0065003 GO:0065007 GO:0065009 GO:0070013 GO:0070063 GO:0070365 GO:0070461 GO:0070646 GO:0070647 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1902493 GO:1902494 GO:1902680 GO:1903047 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 ko05168 map03022 map05168
Pfam Domains
Protein Families
TFIID_30kDa

Protein Analysis

124

Amino Acids

14.1

Weight (kDa)

6.9

Isoelectric Point (pI)

43.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAF10 PF03540 21 - 114 4.9e-32 Transcription initiation factor TFIID 23-30kDa subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 132
AluBI AGCT 2 cut(s) 115, 182
AluI AGCT 2 cut(s) 115, 182
Alw26I GTCTC 1 cut(s) 156
AoxI GGCC 1 cut(s) 132
ApeKI GCWGC 1 cut(s) 251
AseI ATTAAT 1 cut(s) 167
AspLEI GCGC 1 cut(s) 297
AsuHPI GGTGA 1 cut(s) 271
BalI TGGCCA 1 cut(s) 134
BbvCI CCTCAGC 1 cut(s) 207
BbvI GCAGC 1 cut(s) 263
BcoDI GTCTC 1 cut(s) 156
BfmI CTRYAG 2 cut(s) 227, 309
BfoI RGCGCY 1 cut(s) 298
BglII AGATCT 1 cut(s) 316
BisI GCNGC 1 cut(s) 252
BlsI GCNGC 1 cut(s) 253
BmsI GCATC 2 cut(s) 65, 211
Bpu10I CCTNAGC 1 cut(s) 207
Bse118I RCCGGY 1 cut(s) 140
Bse3DI GCAATG 2 cut(s) 239, 329
BseMI GCAATG 2 cut(s) 239, 329
BseMII CTCAG 1 cut(s) 198
BseXI GCAGC 1 cut(s) 263
BseYI CCCAGC 1 cut(s) 18
BshFI GGCC 1 cut(s) 134
BsiSI CCGG 1 cut(s) 141
BslFI GGGAC 1 cut(s) 287
BsmAI GTCTC 1 cut(s) 156
BsmFI GGGAC 1 cut(s) 287
BsnI GGCC 1 cut(s) 134
Bsp143I GATC 1 cut(s) 316
BspANI GGCC 1 cut(s) 134
BspCNI CTCAG 1 cut(s) 199
BsrDI GCAATG 2 cut(s) 239, 329
BsrFI RCCGGY 1 cut(s) 140
BssAI RCCGGY 1 cut(s) 140
BssMI GATC 1 cut(s) 316
BstAPI GCANNNNNTGC 1 cut(s) 221
BstC8I GCNNGC 1 cut(s) 38
BstDEI CTNAG 1 cut(s) 207
BstH2I RGCGCY 1 cut(s) 298
BstHHI GCGC 1 cut(s) 297
BstKTI GATC 1 cut(s) 319
BstMAI GTCTC 1 cut(s) 156
BstMBI GATC 1 cut(s) 316
BstMWI GCNNNNNNNGC 4 cut(s) 121, 212, 221, 248
BstSFI CTRYAG 2 cut(s) 227, 309
BstV1I GCAGC 1 cut(s) 263
BstX2I RGATCY 1 cut(s) 316
BstYI RGATCY 1 cut(s) 316
BsuRI GGCC 1 cut(s) 134
BtsI GCAGTG 1 cut(s) 261
BtsIMutI CAGTG 1 cut(s) 261
Cac8I GCNNGC 1 cut(s) 38
CfoI GCGC 1 cut(s) 297
Cfr10I RCCGGY 1 cut(s) 140
CseI GACGC 1 cut(s) 62
CviAII CATG 1 cut(s) 335
CviJI RGCY 5 cut(s) 115, 134, 144, 175, 182
CviKI_1 RGCY 5 cut(s) 115, 134, 144, 175, 182
DdeI CTNAG 1 cut(s) 207
DpnI GATC 1 cut(s) 318
DpnII GATC 1 cut(s) 316
EaeI YGGCCR 1 cut(s) 132
FaeI CATG 1 cut(s) 338
FaiI YATR 4 cut(s) 9, 104, 311, 336
FaqI GGGAC 1 cut(s) 287
FatI CATG 1 cut(s) 334
Fnu4HI GCNGC 1 cut(s) 252
Fsp4HI GCNGC 1 cut(s) 252
GlaI GCGC 1 cut(s) 296
GluI GCNGC 1 cut(s) 252
GsaI CCCAGC 1 cut(s) 22
HaeII RGCGCY 1 cut(s) 298
HaeIII GGCC 1 cut(s) 134
HapII CCGG 1 cut(s) 141
HgaI GACGC 1 cut(s) 62
HhaI GCGC 1 cut(s) 297
Hin1II CATG 1 cut(s) 338
Hin6I GCGC 1 cut(s) 295
HinP1I GCGC 1 cut(s) 295
HpaII CCGG 1 cut(s) 141
HphI GGTGA 1 cut(s) 271
Hpy188III TCNNGA 3 cut(s) 27, 155, 372
Hpy99I CGWCG 1 cut(s) 56
HpyAV CCTTC 1 cut(s) 26
HpyCH4V TGCA 3 cut(s) 215, 237, 334
HpyF10VI GCNNNNNNNGC 4 cut(s) 121, 212, 221, 248
HpyF3I CTNAG 1 cut(s) 207
Hsp92II CATG 1 cut(s) 338
HspAI GCGC 1 cut(s) 295
Kzo9I GATC 1 cut(s) 316
LmnI GCTCC 1 cut(s) 121
LpnPI CCDG 6 cut(s) 22, 32, 120, 154, 161, 233
Lsp1109I GCAGC 1 cut(s) 263
LweI GCATC 2 cut(s) 65, 211
MalI GATC 1 cut(s) 318
MboI GATC 1 cut(s) 316
MboII GAAGA 1 cut(s) 326
MflI RGATCY 1 cut(s) 316
MlsI TGGCCA 1 cut(s) 134
MluCI AATT 2 cut(s) 68, 168
MluNI TGGCCA 1 cut(s) 134
MnlI CCTC 3 cut(s) 88, 202, 331
Mox20I TGGCCA 1 cut(s) 134
MscI TGGCCA 1 cut(s) 134
MseI TTAA 1 cut(s) 167
MslI CAYNNNNRTG 1 cut(s) 45
Msp20I TGGCCA 1 cut(s) 134
MspI CCGG 1 cut(s) 141
MwoI GCNNNNNNNGC 4 cut(s) 121, 212, 221, 248
NdeII GATC 1 cut(s) 316
NlaIII CATG 1 cut(s) 338
PcsI WCGNNNNNNNCGW 1 cut(s) 48
PkrI GCNGC 1 cut(s) 253
PshBI ATTAAT 1 cut(s) 167
PspFI CCCAGC 1 cut(s) 18
PsuI RGATCY 1 cut(s) 316
RseI CAYNNNNRTG 1 cut(s) 45
SaqAI TTAA 1 cut(s) 167
SatI GCNGC 1 cut(s) 252
Sau3AI GATC 1 cut(s) 316
SetI ASST 5 cut(s) 109, 117, 184, 213, 342
SfaNI GCATC 2 cut(s) 65, 211
SfcI CTRYAG 2 cut(s) 227, 309
SmiMI CAYNNNNRTG 1 cut(s) 45
Sse9I AATT 2 cut(s) 68, 168
SspI AATATT 1 cut(s) 303
TaqI TCGA 2 cut(s) 26, 163
TasI AATT 2 cut(s) 68, 168
Tru1I TTAA 1 cut(s) 167
Tru9I TTAA 1 cut(s) 167
TscAI CASTG 1 cut(s) 261
TseI GCWGC 1 cut(s) 251
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 261
VspI ATTAAT 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.