Rorug06G0048900

TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0006093
Physical Location & Seq
Forward (+)
6501729 .. 6505601
3873 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0048900.1

Sequence Viewer

Length: 867 bp
ATGAAACTGAAAGCAAAAGCCCCCAAAGCAAAGTTGGGGCTACCCACCATCGTCCTCCTCTGTTTCCTCTGCTTCATTGCCGGCCTTTTCACCTCCACCCTCCTCTCCCAGGTCTCCGTCCCTCAATTCCTCTCCGGTCCACGGTCGAGTTCTAGAATACTCGAATCGGAGGATGAAGATCACGGTCCAATGCTGCCCGGGGAGACCGGAGAGAGCTTCATTGAGTCGATTCCGTTCCAGGTGTTGAGTTGGAAGCCGCGGGCGCTTTATTTTCCGAGATTTGCGACTGCGGAGCAATGTGAGAGTGTGATCAAGAGGGCCAAGGCTAAGCTCAGGCCTTCGACGTTGGCTTTGAGGAAAGGAGAGACTGTTGAGAGCACAAAGGGGACTAGAACAAGTTCAGGGACCTTTATCAGTGCATCAGAAGATGAGACCGGAGTCCTGGATATTATTGAGCAAAAGATTGCCCGGGCTACGATGTTACCAAGGGACCATGGAGAGGCATTCAATATATTGCGGTATGACATTGGCCAGAAGTATGATTCTCATTATGATGCGTTCAACCCAGATGAATATGGCCCACAGCAAAGCCAAAGATTTGCTTCATTTTTGCTGTATCTATCTAATGTAGAAGAAGGTGGAGAAACAATGTTTCCTTTTGAGAACGGTTCAAATATGGATATTAGATACGATTACAAGAAATGCATTGGTCTAAAAGTTAAGCCAAGGCAAGGGGATGGGCTTTTATTTTATTCGGTGCTTCCAAATGGCACAATTGATCAGACATCTCTTCATGGAAGCTGCCCAGTGATCAGAGGGGAGAAATGGGTGGCAACAAAGTGGATTAGAAATCAAGAAGAGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000082 GO:0000123 GO:0000125 GO:0000278 GO:0000428 GO:0001889 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003713 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005737 GO:0006139 GO:0006325 GO:0006351 GO:0006352 GO:0006355 GO:0006366 GO:0006367 GO:0006464 GO:0006473 GO:0006475 GO:0006508 GO:0006725 GO:0006807 GO:0006915 GO:0006996 GO:0007049 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008219 GO:0009058 GO:0009059 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0012501 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0016578 GO:0016579 GO:0016591 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0019899 GO:0022402 GO:0022607 GO:0030154 GO:0030331 GO:0030855 GO:0030880 GO:0030914 GO:0031248 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0033276 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0035257 GO:0035258 GO:0035264 GO:0036211 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043933 GO:0043966 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044770 GO:0044772 GO:0044798 GO:0044843 GO:0045935 GO:0046483 GO:0048471 GO:0048513 GO:0048518 GO:0048522 GO:0048589 GO:0048731 GO:0048732 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051098 GO:0051101 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051259 GO:0051260 GO:0051276 GO:0051427 GO:0055029 GO:0060255 GO:0060429 GO:0061008 GO:0061695 GO:0065003 GO:0065007 GO:0065009 GO:0070013 GO:0070063 GO:0070365 GO:0070461 GO:0070646 GO:0070647 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1902493 GO:1902494 GO:1902680 GO:1903047 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 ko05168 map03022 map05168
Pfam Domains
Protein Families
TFIID_30kDa

Protein Analysis

288

Amino Acids

32.24

Weight (kDa)

6.47

Isoelectric Point (pI)

45.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy_3 PF13640 170 - 283 1.9e-15 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 259
AciI CCGC 4 cut(s) 257, 259, 290, 517
AcoI YGGCCR 1 cut(s) 529
AfiI CCNNNNNNNGG 4 cut(s) 109, 141, 499, 731
AgsI TTSAA 3 cut(s) 508, 562, 672
AjnI CCWGG 3 cut(s) 108, 237, 441
AluBI AGCT 3 cut(s) 216, 331, 801
AluI AGCT 3 cut(s) 216, 331, 801
Alw21I GWGCWC 1 cut(s) 380
Alw26I GTCTC 4 cut(s) 118, 197, 359, 425
Ama87I CYCGRG 2 cut(s) 197, 468
AoxI GGCC 5 cut(s) 82, 318, 335, 529, 577
ApeKI GCWGC 2 cut(s) 193, 801
ArsI GACNNNNNNTTYG 2 cut(s) 334, 366
Asp700I GAANNNNTTC 1 cut(s) 397
AspLEI GCGC 1 cut(s) 265
AspS9I GGNCC 6 cut(s) 137, 185, 318, 405, 490, 578
AsuC2I CCSGG 4 cut(s) 198, 199, 469, 470
AsuHPI GGTGA 1 cut(s) 82
AvaI CYCGRG 2 cut(s) 197, 468
AvaII GGWCC 4 cut(s) 137, 185, 405, 490
BalI TGGCCA 1 cut(s) 531
Bbv12I GWGCWC 1 cut(s) 380
BbvI GCAGC 2 cut(s) 180, 788
BccI CCATC 2 cut(s) 56, 731
BciT130I CCWGG 3 cut(s) 110, 239, 443
BclI TGATCA 3 cut(s) 309, 778, 810
BcnI CCSGG 4 cut(s) 198, 199, 469, 470
BcoDI GTCTC 4 cut(s) 118, 197, 359, 425
BfaI CTAG 2 cut(s) 153, 390
BfoI RGCGCY 1 cut(s) 266
BisI GCNGC 3 cut(s) 194, 257, 802
BlpI GCTNAGC 1 cut(s) 327
BlsI GCNGC 3 cut(s) 195, 258, 803
Bme1390I CCNGG 7 cut(s) 110, 198, 199, 239, 443, 469, 470
Bme18I GGWCC 4 cut(s) 137, 185, 405, 490
BmeT110I CYCGRG 2 cut(s) 197, 468
BmgT120I GGNCC 6 cut(s) 137, 185, 318, 405, 490, 578
BmiI GGNNCC 2 cut(s) 406, 491
BmrFI CCNGG 7 cut(s) 110, 198, 199, 239, 443, 469, 470
BmrI ACTGGG 1 cut(s) 800
BmsI GCATC 2 cut(s) 428, 544
BmuI ACTGGG 1 cut(s) 800
BoxI GACNNNNGTC 1 cut(s) 437
Bpu10I CCTNAGC 1 cut(s) 332
Bpu1102I GCTNAGC 1 cut(s) 327
BpuMI CCSGG 4 cut(s) 198, 199, 469, 470
BsaBI GATNNNNATC 1 cut(s) 177
BsaI GGTCTC 3 cut(s) 118, 197, 425
BsaWI WCCGGW 3 cut(s) 134, 206, 434
BsaXI ACNNNNNCTCC 2 cut(s) 354, 384
Bsc4I CCNNNNNNNGG 4 cut(s) 109, 141, 499, 731
Bse118I RCCGGY 1 cut(s) 80
Bse1I ACTGG 1 cut(s) 806
Bse3DI GCAATG 2 cut(s) 75, 302
Bse8I GATNNNNATC 1 cut(s) 177
BseBI CCWGG 3 cut(s) 110, 239, 443
BseGI GGATG 2 cut(s) 178, 742
BseJI GATNNNNATC 1 cut(s) 177
BseLI CCNNNNNNNGG 4 cut(s) 109, 141, 499, 731
BseMI GCAATG 2 cut(s) 75, 302
BseMII CTCAG 1 cut(s) 346
BseNI ACTGG 1 cut(s) 806
BseRI GAGGAG 2 cut(s) 47, 92
BseXI GCAGC 2 cut(s) 180, 788
Bsh1236I CGCG 1 cut(s) 259
Bsh1285I CGRYCG 1 cut(s) 146
BshFI GGCC 5 cut(s) 84, 320, 337, 531, 579
BsiEI CGRYCG 1 cut(s) 146
BsiHKAI GWGCWC 1 cut(s) 380
BsiHKCI CYCGRG 2 cut(s) 197, 468
BsiSI CCGG 6 cut(s) 81, 135, 198, 207, 435, 469
BslFI GGGAC 4 cut(s) 104, 400, 418, 503
BslI CCNNNNNNNGG 4 cut(s) 109, 141, 499, 731
BsmAI GTCTC 4 cut(s) 118, 197, 359, 425
BsmFI GGGAC 4 cut(s) 104, 400, 418, 503
BsmI GAATGC 1 cut(s) 503
BsnI GGCC 5 cut(s) 84, 320, 337, 531, 579
Bso31I GGTCTC 3 cut(s) 118, 197, 425
BsoBI CYCGRG 2 cut(s) 197, 468
Bsp1286I GDGCHC 1 cut(s) 380
Bsp143I GATC 4 cut(s) 178, 309, 778, 810
Bsp1720I GCTNAGC 1 cut(s) 327
Bsp19I CCATGG 1 cut(s) 493
BspACI CCGC 4 cut(s) 257, 259, 290, 517
BspANI GGCC 5 cut(s) 84, 320, 337, 531, 579
BspCNI CTCAG 1 cut(s) 345
BspFNI CGCG 1 cut(s) 259
BspLI GGNNCC 2 cut(s) 406, 491
BspTNI GGTCTC 3 cut(s) 118, 197, 425
BsrDI GCAATG 2 cut(s) 75, 302
BsrFI RCCGGY 1 cut(s) 80
BsrI ACTGG 1 cut(s) 806
BssAI RCCGGY 1 cut(s) 80
BssMI GATC 4 cut(s) 178, 309, 778, 810
BssT1I CCWWGG 4 cut(s) 321, 485, 493, 725
Bst2UI CCWGG 3 cut(s) 110, 239, 443
Bst4CI ACNGT 4 cut(s) 144, 185, 370, 668
Bst6I CTCTTC 2 cut(s) 795, 852
BstC8I GCNNGC 2 cut(s) 82, 261
BstDEI CTNAG 2 cut(s) 327, 332
BstDSI CCRYGG 3 cut(s) 140, 257, 493
BstENI CCTNNNNNAGG 1 cut(s) 107
BstF5I GGATG 2 cut(s) 178, 742
BstFNI CGCG 1 cut(s) 259
BstH2I RGCGCY 1 cut(s) 266
BstHHI GCGC 1 cut(s) 265
BstKTI GATC 4 cut(s) 181, 312, 781, 813
BstMAI GTCTC 4 cut(s) 118, 197, 359, 425
BstMBI GATC 4 cut(s) 178, 309, 778, 810
BstMCI CGRYCG 1 cut(s) 146
BstMWI GCNNNNNNNGC 2 cut(s) 26, 262
BstNI CCWGG 3 cut(s) 110, 239, 443
BstPAI GACNNNNGTC 1 cut(s) 437
BstSCI CCNGG 7 cut(s) 108, 196, 197, 237, 441, 467, 468
BstUI CGCG 1 cut(s) 259
BstV1I GCAGC 2 cut(s) 180, 788
BsuRI GGCC 5 cut(s) 84, 320, 337, 531, 579
BtgI CCRYGG 3 cut(s) 140, 257, 493
BtsCI GGATG 2 cut(s) 178, 742
BtsIMutI CAGTG 2 cut(s) 421, 813
Cac8I GCNNGC 2 cut(s) 82, 261
CfoI GCGC 1 cut(s) 265
Cfr10I RCCGGY 1 cut(s) 80
Cfr13I GGNCC 6 cut(s) 137, 185, 318, 405, 490, 578
Cfr42I CCGCGG 1 cut(s) 260
Cfr9I CCCGGG 2 cut(s) 197, 468
CviAII CATG 2 cut(s) 494, 794
DdeI CTNAG 2 cut(s) 327, 332
DpnI GATC 4 cut(s) 180, 311, 780, 812
DpnII GATC 4 cut(s) 178, 309, 778, 810
EaeI YGGCCR 1 cut(s) 529
Eam1104I CTCTTC 2 cut(s) 795, 852
EarI CTCTTC 2 cut(s) 795, 852
Eco130I CCWWGG 4 cut(s) 321, 485, 493, 725
Eco147I AGGCCT 1 cut(s) 337
Eco31I GGTCTC 3 cut(s) 118, 197, 425
Eco47I GGWCC 4 cut(s) 137, 185, 405, 490
Eco88I CYCGRG 2 cut(s) 197, 468
EcoNI CCTNNNNNAGG 1 cut(s) 107
EcoO109I RGGNCCY 1 cut(s) 405
EcoRII CCWGG 3 cut(s) 108, 237, 441
EcoT14I CCWWGG 4 cut(s) 321, 485, 493, 725
EcoT22I ATGCAT 1 cut(s) 707
ErhI CCWWGG 4 cut(s) 321, 485, 493, 725
FaeI CATG 2 cut(s) 497, 797
FaiI YATR 8 cut(s) 495, 512, 522, 540, 552, 576, 677, 795
FalI AAGNNNNNCTT 2 cut(s) 586, 618
FaqI GGGAC 4 cut(s) 104, 400, 418, 503
FatI CATG 2 cut(s) 493, 793
FauI CCCGC 1 cut(s) 252
FbaI TGATCA 3 cut(s) 309, 778, 810
Fnu4HI GCNGC 3 cut(s) 194, 257, 802
FokI GGATG 2 cut(s) 185, 749
Fsp4HI GCNGC 3 cut(s) 194, 257, 802
FspBI CTAG 2 cut(s) 153, 390
GlaI GCGC 1 cut(s) 264
GluI GCNGC 3 cut(s) 194, 257, 802
HaeII RGCGCY 1 cut(s) 266
HaeIII GGCC 5 cut(s) 84, 320, 337, 531, 579
HapII CCGG 6 cut(s) 81, 135, 198, 207, 435, 469
HhaI GCGC 1 cut(s) 265
Hin1II CATG 2 cut(s) 497, 797
Hin6I GCGC 1 cut(s) 263
HinP1I GCGC 1 cut(s) 263
HinfI GANTC 5 cut(s) 164, 224, 229, 438, 542
HpaII CCGG 6 cut(s) 81, 135, 198, 207, 435, 469
HphI GGTGA 1 cut(s) 82
Hpy166II GTNNAC 1 cut(s) 140
Hpy188I TCNGA 5 cut(s) 169, 276, 424, 783, 815
Hpy188III TCNNGA 3 cut(s) 153, 313, 854
Hpy8I GTNNAC 1 cut(s) 140
Hpy99I CGWCG 1 cut(s) 346
HpyAV CCTTC 2 cut(s) 348, 629
HpyCH4III ACNGT 4 cut(s) 144, 185, 370, 668
HpyCH4IV ACGT 1 cut(s) 344
HpyCH4V TGCA 2 cut(s) 419, 705
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 262
HpyF3I CTNAG 2 cut(s) 327, 332
HpySE526I ACGT 1 cut(s) 344
Hsp92II CATG 2 cut(s) 497, 797
HspAI GCGC 1 cut(s) 263
KroI GCCGGC 1 cut(s) 80
KroNI GCCGGC 1 cut(s) 82
Ksp22I TGATCA 3 cut(s) 309, 778, 810
KspI CCGCGG 1 cut(s) 260
Kzo9I GATC 4 cut(s) 178, 309, 778, 810
LmnI GCTCC 1 cut(s) 292
Lsp1109I GCAGC 2 cut(s) 180, 788
LweI GCATC 2 cut(s) 428, 544
MaeI CTAG 2 cut(s) 153, 390
MaeII ACGT 1 cut(s) 344
MaeIII GTNAC 1 cut(s) 480
MalI GATC 4 cut(s) 180, 311, 780, 812
MboI GATC 4 cut(s) 178, 309, 778, 810
MboII GAAGA 4 cut(s) 188, 437, 644, 782
MfeI CAATTG 1 cut(s) 774
MhlI GDGCHC 1 cut(s) 380
MlsI TGGCCA 1 cut(s) 531
MluCI AATT 2 cut(s) 125, 774
MluNI TGGCCA 1 cut(s) 531
MlyI GAGTC 2 cut(s) 233, 447
MmeI TCCRAC 1 cut(s) 230
Mox20I TGGCCA 1 cut(s) 531
Mph1103I ATGCAT 1 cut(s) 707
MroNI GCCGGC 1 cut(s) 80
MroXI GAANNNNTTC 1 cut(s) 397
MscI TGGCCA 1 cut(s) 531
MseI TTAA 1 cut(s) 720
MslI CAYNNNNRTG 1 cut(s) 552
Msp20I TGGCCA 1 cut(s) 531
MspA1I CMGCKG 1 cut(s) 259
MspI CCGG 6 cut(s) 81, 135, 198, 207, 435, 469
MspR9I CCNGG 7 cut(s) 110, 198, 199, 239, 443, 469, 470
MunI CAATTG 1 cut(s) 774
Mva1269I GAATGC 1 cut(s) 503
MvaI CCWGG 3 cut(s) 110, 239, 443
MvnI CGCG 1 cut(s) 259
MwoI GCNNNNNNNGC 2 cut(s) 26, 262
NaeI GCCGGC 1 cut(s) 82
NciI CCSGG 4 cut(s) 198, 199, 469, 470
NcoI CCATGG 1 cut(s) 493
NdeII GATC 4 cut(s) 178, 309, 778, 810
NgoMIV GCCGGC 1 cut(s) 80
NlaIII CATG 2 cut(s) 497, 797
NlaIV GGNNCC 2 cut(s) 406, 491
NsiI ATGCAT 1 cut(s) 707
PceI AGGCCT 1 cut(s) 337
PctI GAATGC 1 cut(s) 503
PdiI GCCGGC 1 cut(s) 82
PdmI GAANNNNTTC 1 cut(s) 397
PfeI GAWTC 3 cut(s) 164, 229, 542
PfoI TCCNGGA 1 cut(s) 441
PkrI GCNGC 3 cut(s) 195, 258, 803
PleI GAGTC 2 cut(s) 232, 446
PpsI GAGTC 2 cut(s) 232, 446
PpuMI RGGWCCY 1 cut(s) 405
PshAI GACNNNNGTC 1 cut(s) 437
Psp5II RGGWCCY 1 cut(s) 405
Psp6I CCWGG 3 cut(s) 108, 237, 441
PspGI CCWGG 3 cut(s) 108, 237, 441
PspN4I GGNNCC 2 cut(s) 406, 491
PspPI GGNCC 6 cut(s) 137, 185, 318, 405, 490, 578
PspPPI RGGWCCY 1 cut(s) 405
RseI CAYNNNNRTG 1 cut(s) 552
SacII CCGCGG 1 cut(s) 260
SaqAI TTAA 1 cut(s) 720
SatI GCNGC 3 cut(s) 194, 257, 802
Sau3AI GATC 4 cut(s) 178, 309, 778, 810
Sau96I GGNCC 6 cut(s) 137, 185, 318, 405, 490, 578
SchI GAGTC 2 cut(s) 233, 447
ScrFI CCNGG 7 cut(s) 110, 198, 199, 239, 443, 469, 470
SduI GDGCHC 1 cut(s) 380
SetI ASST 9 cut(s) 95, 114, 218, 243, 333, 347, 410, 640, 803
SfaNI GCATC 2 cut(s) 428, 544
Sfr303I CCGCGG 1 cut(s) 260
SgrBI CCGCGG 1 cut(s) 260
SinI GGWCC 4 cut(s) 137, 185, 405, 490
SmaI CCCGGG 2 cut(s) 199, 470
SmiMI CAYNNNNRTG 1 cut(s) 552
SrfI GCCCGGGC 1 cut(s) 470
Sse9I AATT 2 cut(s) 125, 774
SseBI AGGCCT 1 cut(s) 337
SsiI CCGC 4 cut(s) 257, 259, 290, 517
SspMI CTAG 2 cut(s) 153, 390
StuI AGGCCT 1 cut(s) 337
StyD4I CCNGG 7 cut(s) 108, 196, 197, 237, 441, 467, 468
StyI CCWWGG 4 cut(s) 321, 485, 493, 725
TaaI ACNGT 4 cut(s) 144, 185, 370, 668
TaiI ACGT 1 cut(s) 347
TaqI TCGA 4 cut(s) 146, 162, 227, 341
TasI AATT 2 cut(s) 125, 774
TauI GCSGC 1 cut(s) 259
TfiI GAWTC 3 cut(s) 164, 229, 542
Tru1I TTAA 1 cut(s) 720
Tru9I TTAA 1 cut(s) 720
TscAI CASTG 2 cut(s) 421, 813
TseI GCWGC 2 cut(s) 193, 801
TspDTI ATGAA 7 cut(s) 17, 64, 189, 208, 585, 594, 782
TspGWI ACGGA 2 cut(s) 106, 222
TspMI CCCGGG 2 cut(s) 197, 468
TspRI CASTG 2 cut(s) 421, 813
VpaK11BI GGWCC 4 cut(s) 137, 185, 405, 490
XagI CCTNNNNNAGG 1 cut(s) 107
XbaI TCTAGA 1 cut(s) 152
XcmI CCANNNNNNNNNTGG 1 cut(s) 31
XmaI CCCGGG 2 cut(s) 197, 468
XmnI GAANNNNTTC 1 cut(s) 397
XspI CTAG 2 cut(s) 153, 390
Zsp2I ATGCAT 1 cut(s) 707
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.