RchiOBHm_Chr6g0269591

TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0006093
Physical Location & Seq
Forward (+)
26906804 .. 26910799
3996 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24182

Sequence Viewer

Length: 426 bp
ATGAACCATAATAACCACCAAAGCCAGCAATCGAGCGAAGGCAGGCACGACGATGACGAGGCATCTCTCTCTGAATTCCTCGCCTCCCTAATGGACTACACTCCCACCATACCCGACGAGCTTGTGGAGCATTACTTGGCCAAGAGCGGCTTCCAGTGTCCCGACGTTCGATTAATTAGGCTGGTAGCTGTTGCCACACAAAAGTTTGTCGCTGAGGTTGCAACTGATGCTCTACAGCAATGCAAAGCAAGACAGGCAGCAGTGGTGAAAGACAAAAGGGACAAACAGCAAAAGGATAAACGCCCAATATTGACTATGGAAGACCTGTCAAAGGCATTGCGTGAGTATGGCGTCAATGTGAAGCACCAAGAATATTTTGCTGACAGCCCTTCAACTGGGATGGATCCTGCATCAAGAGAGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000082 GO:0000123 GO:0000125 GO:0000278 GO:0000428 GO:0001889 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003713 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005737 GO:0006139 GO:0006325 GO:0006351 GO:0006352 GO:0006355 GO:0006366 GO:0006367 GO:0006464 GO:0006473 GO:0006475 GO:0006508 GO:0006725 GO:0006807 GO:0006915 GO:0006996 GO:0007049 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008219 GO:0009058 GO:0009059 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0012501 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0016578 GO:0016579 GO:0016591 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0019899 GO:0022402 GO:0022607 GO:0030154 GO:0030331 GO:0030855 GO:0030880 GO:0030914 GO:0031248 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0033276 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0035257 GO:0035258 GO:0035264 GO:0036211 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043933 GO:0043966 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044770 GO:0044772 GO:0044798 GO:0044843 GO:0045935 GO:0046483 GO:0048471 GO:0048513 GO:0048518 GO:0048522 GO:0048589 GO:0048731 GO:0048732 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051098 GO:0051101 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051259 GO:0051260 GO:0051276 GO:0051427 GO:0055029 GO:0060255 GO:0060429 GO:0061008 GO:0061695 GO:0065003 GO:0065007 GO:0065009 GO:0070013 GO:0070063 GO:0070365 GO:0070461 GO:0070646 GO:0070647 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1902493 GO:1902494 GO:1902680 GO:1903047 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 ko05168 map03022 map05168
Pfam Domains
Protein Families
TFIID_30kDa

Protein Analysis

141

Amino Acids

15.94

Weight (kDa)

5.36

Isoelectric Point (pI)

52.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAF10 PF03540 23 - 126 9.5e-40 Transcription initiation factor TFIID 23-30kDa subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 147
AciI CCGC 1 cut(s) 147
AclWI GGATC 2 cut(s) 398, 411
AcoI YGGCCR 1 cut(s) 138
AcsI RAATTY 1 cut(s) 74
AcyI GRCGYC 1 cut(s) 351
AfiI CCNNNNNNNGG 2 cut(s) 331, 395
AgsI TTSAA 1 cut(s) 393
AjuI GAANNNNNNNTTGG 2 cut(s) 134, 166
AluBI AGCT 2 cut(s) 121, 188
AluI AGCT 2 cut(s) 121, 188
AlwI GGATC 2 cut(s) 398, 411
AoxI GGCC 1 cut(s) 138
ApeKI GCWGC 1 cut(s) 257
ApoI RAATTY 1 cut(s) 74
AseI ATTAAT 1 cut(s) 173
AsuHPI GGTGA 1 cut(s) 277
BalI TGGCCA 1 cut(s) 140
BamHI GGATCC 1 cut(s) 403
BbsI GAAGAC 1 cut(s) 327
BbvCI CCTCAGC 1 cut(s) 213
BbvI GCAGC 1 cut(s) 269
BccI CCATC 1 cut(s) 394
BfmI CTRYAG 1 cut(s) 233
BisI GCNGC 2 cut(s) 148, 258
BlsI GCNGC 2 cut(s) 149, 259
BmiI GGNNCC 1 cut(s) 405
BmrI ACTGGG 1 cut(s) 405
BmsI GCATC 3 cut(s) 71, 217, 419
BmuI ACTGGG 1 cut(s) 405
BpiI GAAGAC 1 cut(s) 327
Bpu10I CCTNAGC 1 cut(s) 213
BsaHI GRCGYC 1 cut(s) 351
Bsc4I CCNNNNNNNGG 2 cut(s) 331, 395
Bse1I ACTGG 2 cut(s) 154, 400
Bse3DI GCAATG 2 cut(s) 245, 335
BseGI GGATG 1 cut(s) 405
BseLI CCNNNNNNNGG 2 cut(s) 331, 395
BseMI GCAATG 2 cut(s) 245, 335
BseMII CTCAG 1 cut(s) 204
BseNI ACTGG 2 cut(s) 154, 400
BseXI GCAGC 1 cut(s) 269
BshFI GGCC 1 cut(s) 140
BslFI GGGAC 2 cut(s) 144, 293
BslI CCNNNNNNNGG 2 cut(s) 331, 395
BsmFI GGGAC 2 cut(s) 144, 293
BsnI GGCC 1 cut(s) 140
Bsp143I GATC 1 cut(s) 403
BspACI CCGC 1 cut(s) 147
BspANI GGCC 1 cut(s) 140
BspCNI CTCAG 1 cut(s) 205
BspLI GGNNCC 1 cut(s) 405
BspPI GGATC 2 cut(s) 398, 411
BsrBI CCGCTC 1 cut(s) 147
BsrDI GCAATG 2 cut(s) 245, 335
BsrI ACTGG 2 cut(s) 154, 400
BssMI GATC 1 cut(s) 403
BssNI GRCGYC 1 cut(s) 351
BstACI GRCGYC 1 cut(s) 351
BstAPI GCANNNNNTGC 1 cut(s) 227
BstC8I GCNNGC 2 cut(s) 26, 44
BstDEI CTNAG 1 cut(s) 213
BstENI CCTNNNNNAGG 1 cut(s) 329
BstF5I GGATG 1 cut(s) 405
BstKTI GATC 1 cut(s) 406
BstMBI GATC 1 cut(s) 403
BstMWI GCNNNNNNNGC 4 cut(s) 127, 218, 227, 254
BstSFI CTRYAG 1 cut(s) 233
BstV1I GCAGC 1 cut(s) 269
BstV2I GAAGAC 1 cut(s) 327
BstX2I RGATCY 1 cut(s) 403
BstYI RGATCY 1 cut(s) 403
BsuRI GGCC 1 cut(s) 140
BtsCI GGATG 1 cut(s) 405
BtsI GCAGTG 1 cut(s) 267
BtsIMutI CAGTG 2 cut(s) 161, 267
Cac8I GCNNGC 2 cut(s) 26, 44
CseI GACGC 1 cut(s) 340
CviJI RGCY 7 cut(s) 24, 121, 140, 150, 181, 188, 387
CviKI_1 RGCY 7 cut(s) 24, 121, 140, 150, 181, 188, 387
DdeI CTNAG 1 cut(s) 213
DpnI GATC 1 cut(s) 405
DpnII GATC 1 cut(s) 403
EaeI YGGCCR 1 cut(s) 138
EcoNI CCTNNNNNAGG 1 cut(s) 329
EcoRI GAATTC 1 cut(s) 74
FaiI YATR 4 cut(s) 9, 110, 317, 348
FalI AAGNNNNNCTT 2 cut(s) 134, 166
FaqI GGGAC 2 cut(s) 144, 293
Fnu4HI GCNGC 2 cut(s) 148, 258
FokI GGATG 1 cut(s) 412
Fsp4HI GCNGC 2 cut(s) 148, 258
GluI GCNGC 2 cut(s) 148, 258
HaeIII GGCC 1 cut(s) 140
HgaI GACGC 1 cut(s) 340
Hin1I GRCGYC 1 cut(s) 351
HphI GGTGA 1 cut(s) 277
Hpy188I TCNGA 1 cut(s) 73
Hpy188III TCNNGA 2 cut(s) 161, 414
Hpy99I CGWCG 3 cut(s) 53, 119, 167
HpyAV CCTTC 2 cut(s) 32, 399
HpyCH4IV ACGT 1 cut(s) 165
HpyCH4V TGCA 3 cut(s) 221, 243, 410
HpyF10VI GCNNNNNNNGC 4 cut(s) 127, 218, 227, 254
HpyF3I CTNAG 1 cut(s) 213
HpySE526I ACGT 1 cut(s) 165
Hsp92I GRCGYC 1 cut(s) 351
Kzo9I GATC 1 cut(s) 403
LmnI GCTCC 1 cut(s) 127
LpnPI CCDG 8 cut(s) 28, 38, 167, 167, 239, 338, 381, 420
Lsp1109I GCAGC 1 cut(s) 269
LweI GCATC 3 cut(s) 71, 217, 419
MaeII ACGT 1 cut(s) 165
MalI GATC 1 cut(s) 405
MbiI CCGCTC 1 cut(s) 147
MboI GATC 1 cut(s) 403
MboII GAAGA 1 cut(s) 332
MflI RGATCY 1 cut(s) 403
MlsI TGGCCA 1 cut(s) 140
MluCI AATT 2 cut(s) 74, 174
MluNI TGGCCA 1 cut(s) 140
MnlI CCTC 5 cut(s) 52, 89, 94, 208, 412
Mox20I TGGCCA 1 cut(s) 140
MscI TGGCCA 1 cut(s) 140
MseI TTAA 1 cut(s) 173
MslI CAYNNNNRTG 1 cut(s) 51
Msp20I TGGCCA 1 cut(s) 140
MwoI GCNNNNNNNGC 4 cut(s) 127, 218, 227, 254
NdeII GATC 1 cut(s) 403
NlaIV GGNNCC 1 cut(s) 405
PcsI WCGNNNNNNNCGW 1 cut(s) 54
PkrI GCNGC 2 cut(s) 149, 259
PshBI ATTAAT 1 cut(s) 173
PspN4I GGNNCC 1 cut(s) 405
PsuI RGATCY 1 cut(s) 403
RseI CAYNNNNRTG 1 cut(s) 51
SaqAI TTAA 1 cut(s) 173
SatI GCNGC 2 cut(s) 148, 258
Sau3AI GATC 1 cut(s) 403
SetI ASST 5 cut(s) 123, 168, 190, 219, 327
SfaNI GCATC 3 cut(s) 71, 217, 419
SfcI CTRYAG 1 cut(s) 233
SmiMI CAYNNNNRTG 1 cut(s) 51
Sse9I AATT 2 cut(s) 74, 174
SsiI CCGC 1 cut(s) 147
SspI AATATT 2 cut(s) 309, 374
TaiI ACGT 1 cut(s) 168
TaqI TCGA 2 cut(s) 32, 169
TasI AATT 2 cut(s) 74, 174
TauI GCSGC 1 cut(s) 150
Tru1I TTAA 1 cut(s) 173
Tru9I TTAA 1 cut(s) 173
TscAI CASTG 2 cut(s) 161, 267
TseI GCWGC 1 cut(s) 257
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 161, 267
VspI ATTAAT 1 cut(s) 173
XagI CCTNNNNNAGG 1 cut(s) 329
XapI RAATTY 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.