Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0006093

Physical Location & Seq

Genomic Coordinates Reverse (-)

3158444 .. 3160163

Gene Structure 1720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g04110.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGAACCAGAACCCAACTCAAAACCAGAACCAGCAACCGAGCGACGGCGGAAAGCACGACGATGATGCCGCCCTCACCGACTTCCTCGCCTCCTTGATGGACTACACCCCCACCATACCCGACGAGCTCGTGGAGCATTACTTGGCCAAGAGCGGCTTCCAGTGCCCCGACGTTCGATTAATCAGGCTGGTAGCTGTCGCCACGCAAAAGTTTGTTTCTGAGGTTGCAACTGATGCTCTTCAGCAATGCAAAGCGAGACAGGCTTCTGTAGTCAAAGACAAAAGGGACAAACAACAAAAGGATAAGCGTCTAATATTGACGATGGAAGACCTGTCAAGGGCATTGCGTGAGCATGGCGTCAATGTGAAGCACCAAGAGTATTTTGCGGACAGCCCTTCAACTGGGATGGATCCTGCAACAAGGGAAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000082 GO:0000123 GO:0000125 GO:0000278 GO:0000428 GO:0001889 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003713 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005737 GO:0006139 GO:0006325 GO:0006351 GO:0006352 GO:0006355 GO:0006366 GO:0006367 GO:0006464 GO:0006473 GO:0006475 GO:0006508 GO:0006725 GO:0006807 GO:0006915 GO:0006996 GO:0007049 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008219 GO:0009058 GO:0009059 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0012501 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0016578 GO:0016579 GO:0016591 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0019899 GO:0022402 GO:0022607 GO:0030154 GO:0030331 GO:0030855 GO:0030880 GO:0030914 GO:0031248 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0033276 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0035257 GO:0035258 GO:0035264 GO:0036211 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043933 GO:0043966 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044770 GO:0044772 GO:0044798 GO:0044843 GO:0045935 GO:0046483 GO:0048471 GO:0048513 GO:0048518 GO:0048522 GO:0048589 GO:0048731 GO:0048732 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051098 GO:0051101 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051259 GO:0051260 GO:0051276 GO:0051427 GO:0055029 GO:0060255 GO:0060429 GO:0061008 GO:0061695 GO:0065003 GO:0065007 GO:0065009 GO:0070013 GO:0070063 GO:0070365 GO:0070461 GO:0070646 GO:0070647 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1902493 GO:1902494 GO:1902680 GO:1903047 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko05168 map03022 map05168

Pfam Domains

Protein Families

TFIID_30kDa

Protein Analysis

144

Amino Acids

16.09

Weight (kDa)

5.36

Isoelectric Point (pI)

37.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006093)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31720 AT4G31720 AT4G31720
fragaria_vesca	FvH4_2g11240 FvH4_2g11240
malus_domestica	MD08G1049200.v1.1 MD15G1045700.v1.1
prunus_persica	Prupe.1G399400_v2.0.a1 Prupe.1G399400_v2.0.a1 Prupe.1G399400_v2.0.a1
pyrus_communis	pycom08g04110 pycom15g04260
rosa_chinensis	RchiOBHm_Chr2g0161651 RchiOBHm_Chr6g0269591
rosa_laevigata	RLG00000013845
rosa_multiflora	Rmu_sc0003863.1_g000002
rosa_roxburghii	Rroxscaffold_7G00198630
rosa_rugosa	Rorug02G0491400 Rorug02G0491400 Rorug06G0048900
rosa_samantha	Rh2CG541000 Rh2DG579700 Rh6BG174300 Rh6CG168600 Rh6DG160400
rosa_wichuraiana	Rw2G046100 Rw6G014540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	153
AciI	CCGC	4 cut(s)	48, 69, 153, 386
AclWI	GGATC	2 cut(s)	404, 417
AcoI	YGGCCR	1 cut(s)	144
AcuI	CTGAAG	1 cut(s)	224
AcyI	GRCGYC	1 cut(s)	357
AfiI	CCNNNNNNNGG	3 cut(s)	44, 337, 401
AgsI	TTSAA	1 cut(s)	399
AjuI	GAANNNNNNNTTGG	2 cut(s)	140, 172
AluBI	AGCT	2 cut(s)	127, 194
AluI	AGCT	2 cut(s)	127, 194
Alw21I	GWGCWC	1 cut(s)	129
Alw26I	GTCTC	1 cut(s)	250
AlwI	GGATC	2 cut(s)	404, 417
AoxI	GGCC	1 cut(s)	144
AseI	ATTAAT	1 cut(s)	179
AsuHPI	GGTGA	1 cut(s)	67
BaeGI	GKGCMC	1 cut(s)	167
BalI	TGGCCA	1 cut(s)	146
BamHI	GGATCC	1 cut(s)	409
BanII	GRGCYC	1 cut(s)	129
BauI	CACGAG	1 cut(s)	128
BbsI	GAAGAC	1 cut(s)	333
Bbv12I	GWGCWC	1 cut(s)	129
BccI	CCATC	3 cut(s)	91, 316, 400
BceAI	ACGGC	1 cut(s)	61
BcgI	CGANNNNNNTGC	2 cut(s)	47, 81
BcoDI	GTCTC	1 cut(s)	250
BfmI	CTRYAG	1 cut(s)	267
BisI	GCNGC	2 cut(s)	69, 154
BlsI	GCNGC	2 cut(s)	70, 155
BmiI	GGNNCC	1 cut(s)	411
BmrI	ACTGGG	1 cut(s)	411
BmsI	GCATC	2 cut(s)	55, 223
BmuI	ACTGGG	1 cut(s)	411
BpiI	GAAGAC	1 cut(s)	333
BsaHI	GRCGYC	1 cut(s)	357
Bsc4I	CCNNNNNNNGG	3 cut(s)	44, 337, 401
Bse1I	ACTGG	2 cut(s)	160, 406
Bse3DI	GCAATG	2 cut(s)	251, 341
BseGI	GGATG	1 cut(s)	411
BseLI	CCNNNNNNNGG	3 cut(s)	44, 337, 401
BseMI	GCAATG	2 cut(s)	251, 341
BseMII	CTCAG	1 cut(s)	210
BseNI	ACTGG	2 cut(s)	160, 406
BseSI	GKGCMC	1 cut(s)	167
BshFI	GGCC	1 cut(s)	146
BsiHKAI	GWGCWC	1 cut(s)	129
BslFI	GGGAC	1 cut(s)	299
BslI	CCNNNNNNNGG	3 cut(s)	44, 337, 401
BsmAI	GTCTC	1 cut(s)	250
BsmFI	GGGAC	1 cut(s)	299
BsnI	GGCC	1 cut(s)	146
Bsp1286I	GDGCHC	2 cut(s)	129, 167
Bsp143I	GATC	1 cut(s)	409
BspACI	CCGC	4 cut(s)	48, 69, 153, 386
BspANI	GGCC	1 cut(s)	146
BspCNI	CTCAG	1 cut(s)	211
BspLI	GGNNCC	1 cut(s)	411
BspPI	GGATC	2 cut(s)	404, 417
BspQI	GCTCTTC	1 cut(s)	243
BsrBI	CCGCTC	1 cut(s)	153
BsrDI	GCAATG	2 cut(s)	251, 341
BsrI	ACTGG	2 cut(s)	160, 406
BssMI	GATC	1 cut(s)	409
BssNI	GRCGYC	1 cut(s)	357
BssSI	CACGAG	1 cut(s)	128
Bst2BI	CACGAG	1 cut(s)	128
Bst6I	CTCTTC	2 cut(s)	243, 420
BstACI	GRCGYC	1 cut(s)	357
BstAPI	GCANNNNNTGC	1 cut(s)	233
BstDEI	CTNAG	1 cut(s)	219
BstF5I	GGATG	1 cut(s)	411
BstKTI	GATC	1 cut(s)	412
BstMAI	GTCTC	1 cut(s)	250
BstMBI	GATC	1 cut(s)	409
BstMWI	GCNNNNNNNGC	4 cut(s)	133, 162, 233, 260
BstSFI	CTRYAG	1 cut(s)	267
BstSLI	GKGCMC	1 cut(s)	167
BstV2I	GAAGAC	1 cut(s)	333
BstX2I	RGATCY	1 cut(s)	409
BstYI	RGATCY	1 cut(s)	409
BsuRI	GGCC	1 cut(s)	146
BtsCI	GGATG	1 cut(s)	411
BtsIMutI	CAGTG	1 cut(s)	167
CseI	GACGC	2 cut(s)	296, 346
CviAII	CATG	1 cut(s)	353
CviJI	RGCY	7 cut(s)	127, 146, 156, 187, 194, 263, 393
CviKI_1	RGCY	7 cut(s)	127, 146, 156, 187, 194, 263, 393
DdeI	CTNAG	1 cut(s)	219
DpnI	GATC	1 cut(s)	411
DpnII	GATC	1 cut(s)	409
EaeI	YGGCCR	1 cut(s)	144
Eam1104I	CTCTTC	2 cut(s)	243, 420
EarI	CTCTTC	2 cut(s)	243, 420
EciI	GGCGGA	1 cut(s)	63
Ecl136II	GAGCTC	1 cut(s)	127
Eco24I	GRGCYC	1 cut(s)	129
Eco53kI	GAGCTC	1 cut(s)	127
Eco57I	CTGAAG	1 cut(s)	224
EcoICRI	GAGCTC	1 cut(s)	127
EcoT38I	GRGCYC	1 cut(s)	129
FaeI	CATG	1 cut(s)	356
FaiI	YATR	2 cut(s)	116, 354
FalI	AAGNNNNNCTT	2 cut(s)	140, 172
FaqI	GGGAC	1 cut(s)	299
FatI	CATG	1 cut(s)	352
Fnu4HI	GCNGC	2 cut(s)	69, 154
FokI	GGATG	1 cut(s)	418
FriOI	GRGCYC	1 cut(s)	129
Fsp4HI	GCNGC	2 cut(s)	69, 154
GluI	GCNGC	2 cut(s)	69, 154
HaeIII	GGCC	1 cut(s)	146
HgaI	GACGC	2 cut(s)	296, 346
Hin1I	GRCGYC	1 cut(s)	357
Hin1II	CATG	1 cut(s)	356
HphI	GGTGA	1 cut(s)	67
Hpy188I	TCNGA	1 cut(s)	220
Hpy99I	CGWCG	4 cut(s)	47, 62, 125, 173
HpyAV	CCTTC	1 cut(s)	405
HpyCH4IV	ACGT	1 cut(s)	171
HpyCH4V	TGCA	3 cut(s)	227, 249, 416
HpyF10VI	GCNNNNNNNGC	4 cut(s)	133, 162, 233, 260
HpyF3I	CTNAG	1 cut(s)	219
HpySE526I	ACGT	1 cut(s)	171
Hsp92I	GRCGYC	1 cut(s)	357
Hsp92II	CATG	1 cut(s)	356
Kzo9I	GATC	1 cut(s)	409
LguI	GCTCTTC	1 cut(s)	243
LmnI	GCTCC	1 cut(s)	133
LweI	GCATC	2 cut(s)	55, 223
MaeII	ACGT	1 cut(s)	171
MalI	GATC	1 cut(s)	411
MbiI	CCGCTC	1 cut(s)	153
MboI	GATC	1 cut(s)	409
MboII	GAAGA	2 cut(s)	230, 338
MflI	RGATCY	1 cut(s)	409
MhlI	GDGCHC	2 cut(s)	129, 167
MlsI	TGGCCA	1 cut(s)	146
MluNI	TGGCCA	1 cut(s)	146
MnlI	CCTC	4 cut(s)	83, 95, 100, 214
Mox20I	TGGCCA	1 cut(s)	146
MscI	TGGCCA	1 cut(s)	146
MseI	TTAA	1 cut(s)	179
MslI	CAYNNNNRTG	1 cut(s)	60
Msp20I	TGGCCA	1 cut(s)	146
MwoI	GCNNNNNNNGC	4 cut(s)	133, 162, 233, 260
NdeII	GATC	1 cut(s)	409
NlaIII	CATG	1 cut(s)	356
NlaIV	GGNNCC	1 cut(s)	411
PciSI	GCTCTTC	1 cut(s)	243
PkrI	GCNGC	2 cut(s)	70, 155
PshBI	ATTAAT	1 cut(s)	179
Psp124BI	GAGCTC	1 cut(s)	129
PspN4I	GGNNCC	1 cut(s)	411
PsuI	RGATCY	1 cut(s)	409
RseI	CAYNNNNRTG	1 cut(s)	60
SacI	GAGCTC	1 cut(s)	129
SapI	GCTCTTC	1 cut(s)	243
SaqAI	TTAA	1 cut(s)	179
SatI	GCNGC	2 cut(s)	69, 154
Sau3AI	GATC	1 cut(s)	409
SduI	GDGCHC	2 cut(s)	129, 167
SetI	ASST	5 cut(s)	129, 174, 196, 225, 333
SfaNI	GCATC	2 cut(s)	55, 223
SfcI	CTRYAG	1 cut(s)	267
SmiMI	CAYNNNNRTG	1 cut(s)	60
SsiI	CCGC	4 cut(s)	48, 69, 153, 386
SspI	AATATT	1 cut(s)	315
SstI	GAGCTC	1 cut(s)	129
TaiI	ACGT	1 cut(s)	174
TaqI	TCGA	1 cut(s)	175
TauI	GCSGC	2 cut(s)	71, 156
Tru1I	TTAA	1 cut(s)	179
Tru9I	TTAA	1 cut(s)	179
TscAI	CASTG	1 cut(s)	167
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	167
VspI	ATTAAT	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.