Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0006093

Physical Location & Seq

Genomic Coordinates Forward (+)

2563281 .. 2565387

Gene Structure 2107 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g04260.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGCTTTTAAAATATCTTCTTGTTATAAATTTGTTGAAATTTGAGAGTGCTTCACCTTTAGCGGGTTTGCTTTTTCTAGAACGAGTGTTTTTACGTTGCATACACTTATCAAGTTTTCTTGCTCAACTTTACAGAAGCAGTGGCAAACATGCCCTAGAGAAGTGCTCATGCACAAAAGTGCTTTCTAGAAAAGTACTTTTAAACCGGCTTGGAACACATCCTACTGGAGTACTAGTAACCAAAACGGGCAATTGGATAAAAATAGGCCAATCAATGAACATCCTAGAGAAGACTGTTAACAGTCTGCACAGGCAGTCACAAAAGATCATATATTGGTATTGGAAAGAGAGAGAGGGAAAGAAGATGAACCAGAACCAGCAACCGAGCGACGGCGGAAAGCACGAGGATGACGCCGCCCTCACCGACTTCCTCGCCTCCCTGATGGACTACACCCCCACCATGCCCGACGAGCTCGTGGAGCATTACTTGGCGAAAAGCGGCTTCCAATGCCCCGACGTTCGATTAATCAGGCTGGTAGCTGTCGCCACACAAAAGTTTGTTTCTGAGGTCGCAACTGATGCTCTTCAGCAATGCAAAGCGAGGCAGGCTTCTATAGTCAAAGACAAAAGGGACAAACAACAAAAGGATAAGCGTCTAATATTGACAATGGAAGACCTGTCAAGAGCATTGCGTGAGTATGGCGTTAATGTGAAGCACCAAGAATATTTTGCGGACTGCCCTTCGAATGGGATGGATCCTGCAACACGGGAAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000082 GO:0000123 GO:0000125 GO:0000278 GO:0000428 GO:0001889 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003713 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005737 GO:0006139 GO:0006325 GO:0006351 GO:0006352 GO:0006355 GO:0006366 GO:0006367 GO:0006464 GO:0006473 GO:0006475 GO:0006508 GO:0006725 GO:0006807 GO:0006915 GO:0006996 GO:0007049 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008219 GO:0009058 GO:0009059 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0012501 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0016578 GO:0016579 GO:0016591 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0019899 GO:0022402 GO:0022607 GO:0030154 GO:0030331 GO:0030855 GO:0030880 GO:0030914 GO:0031248 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0033276 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0035257 GO:0035258 GO:0035264 GO:0036211 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043933 GO:0043966 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044770 GO:0044772 GO:0044798 GO:0044843 GO:0045935 GO:0046483 GO:0048471 GO:0048513 GO:0048518 GO:0048522 GO:0048589 GO:0048731 GO:0048732 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051098 GO:0051101 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051259 GO:0051260 GO:0051276 GO:0051427 GO:0055029 GO:0060255 GO:0060429 GO:0061008 GO:0061695 GO:0065003 GO:0065007 GO:0065009 GO:0070013 GO:0070063 GO:0070365 GO:0070461 GO:0070646 GO:0070647 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1902493 GO:1902494 GO:1902680 GO:1903047 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko05168 map03022 map05168

Pfam Domains

Protein Families

TFIID_30kDa

Protein Analysis

259

Amino Acids

29.46

Weight (kDa)

9.21

Isoelectric Point (pI)

38.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006093)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31720 AT4G31720 AT4G31720
fragaria_vesca	FvH4_2g11240 FvH4_2g11240
malus_domestica	MD08G1049200.v1.1 MD15G1045700.v1.1
prunus_persica	Prupe.1G399400_v2.0.a1 Prupe.1G399400_v2.0.a1 Prupe.1G399400_v2.0.a1
pyrus_communis	pycom08g04110 pycom15g04260
rosa_chinensis	RchiOBHm_Chr2g0161651 RchiOBHm_Chr6g0269591
rosa_laevigata	RLG00000013845
rosa_multiflora	Rmu_sc0003863.1_g000002
rosa_roxburghii	Rroxscaffold_7G00198630
rosa_rugosa	Rorug02G0491400 Rorug02G0491400 Rorug06G0048900
rosa_samantha	Rh2CG541000 Rh2DG579700 Rh6BG174300 Rh6CG168600 Rh6DG160400
rosa_wichuraiana	Rw2G046100 Rw6G014540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	26
AciI	CCGC	5 cut(s)	62, 393, 414, 498, 731
AclWI	GGATC	2 cut(s)	749, 762
AcsI	RAATTY	2 cut(s)	28, 38
AcuI	CTGAAG	1 cut(s)	569
AcyI	GRCGYC	1 cut(s)	411
AfaI	GTAC	2 cut(s)	195, 231
AfiI	CCNNNNNNNGG	3 cut(s)	62, 389, 746
AgsI	TTSAA	1 cut(s)	37
AhlI	ACTAGT	1 cut(s)	232
AleI	CACNNNNGTG	1 cut(s)	176
AluBI	AGCT	2 cut(s)	472, 539
AluI	AGCT	2 cut(s)	472, 539
Alw21I	GWGCWC	2 cut(s)	167, 474
AlwI	GGATC	2 cut(s)	749, 762
AoxI	GGCC	1 cut(s)	265
ApoI	RAATTY	2 cut(s)	28, 38
AseI	ATTAAT	1 cut(s)	524
AsuHPI	GGTGA	2 cut(s)	45, 412
AsuII	TTCGAA	1 cut(s)	743
BamHI	GGATCC	1 cut(s)	754
BanII	GRGCYC	1 cut(s)	474
BauI	CACGAG	2 cut(s)	401, 473
BbsI	GAAGAC	2 cut(s)	296, 678
Bbv12I	GWGCWC	2 cut(s)	167, 474
BccI	CCATC	2 cut(s)	436, 745
BceAI	ACGGC	1 cut(s)	406
BcuI	ACTAGT	1 cut(s)	232
BfaI	CTAG	5 cut(s)	77, 155, 186, 233, 284
BfmI	CTRYAG	1 cut(s)	612
BisI	GCNGC	2 cut(s)	414, 499
BlsI	GCNGC	2 cut(s)	415, 500
BmcAI	AGTACT	2 cut(s)	195, 231
BmiI	GGNNCC	1 cut(s)	756
BmsI	GCATC	1 cut(s)	568
BpiI	GAAGAC	2 cut(s)	296, 678
BplI	GAGNNNNNCTC	2 cut(s)	149, 181
BpmI	CTGGAG	1 cut(s)	246
Bpu14I	TTCGAA	1 cut(s)	743
BsaHI	GRCGYC	1 cut(s)	411
BsaXI	ACNNNNNCTCC	2 cut(s)	219, 249
Bsc4I	CCNNNNNNNGG	3 cut(s)	62, 389, 746
Bse118I	RCCGGY	1 cut(s)	204
Bse1I	ACTGG	1 cut(s)	229
Bse3DI	GCAATG	2 cut(s)	596, 686
BseGI	GGATG	4 cut(s)	217, 279, 412, 756
BseLI	CCNNNNNNNGG	3 cut(s)	62, 389, 746
BseMI	GCAATG	2 cut(s)	596, 686
BseMII	CTCAG	1 cut(s)	555
BseNI	ACTGG	1 cut(s)	229
BsgI	GTGCAG	1 cut(s)	290
BshFI	GGCC	1 cut(s)	267
BsiHKAI	GWGCWC	2 cut(s)	167, 474
BsiSI	CCGG	1 cut(s)	205
BslFI	GGGAC	1 cut(s)	644
BslI	CCNNNNNNNGG	3 cut(s)	62, 389, 746
BsmFI	GGGAC	1 cut(s)	644
BsnI	GGCC	1 cut(s)	267
Bsp119I	TTCGAA	1 cut(s)	743
Bsp1286I	GDGCHC	2 cut(s)	167, 474
Bsp143I	GATC	2 cut(s)	324, 754
BspACI	CCGC	5 cut(s)	62, 393, 414, 498, 731
BspANI	GGCC	1 cut(s)	267
BspCNI	CTCAG	1 cut(s)	556
BspLI	GGNNCC	1 cut(s)	756
BspPI	GGATC	2 cut(s)	749, 762
BspQI	GCTCTTC	1 cut(s)	588
BspT104I	TTCGAA	1 cut(s)	743
BsrDI	GCAATG	2 cut(s)	596, 686
BsrFI	RCCGGY	1 cut(s)	204
BsrI	ACTGG	1 cut(s)	229
BssAI	RCCGGY	1 cut(s)	204
BssMI	GATC	2 cut(s)	324, 754
BssNI	GRCGYC	1 cut(s)	411
BssSI	CACGAG	2 cut(s)	401, 473
Bst2BI	CACGAG	2 cut(s)	401, 473
Bst4CI	ACNGT	2 cut(s)	295, 302
Bst6I	CTCTTC	2 cut(s)	588, 765
BstACI	GRCGYC	1 cut(s)	411
BstAPI	GCANNNNNTGC	1 cut(s)	578
BstBI	TTCGAA	1 cut(s)	743
BstC8I	GCNNGC	1 cut(s)	606
BstDEI	CTNAG	1 cut(s)	564
BstF5I	GGATG	4 cut(s)	217, 279, 412, 756
BstKTI	GATC	2 cut(s)	327, 757
BstMBI	GATC	2 cut(s)	324, 754
BstMWI	GCNNNNNNNGC	5 cut(s)	469, 478, 507, 578, 605
BstNSI	RCATGY	1 cut(s)	152
BstSFI	CTRYAG	1 cut(s)	612
BstV2I	GAAGAC	2 cut(s)	296, 678
BstX2I	RGATCY	1 cut(s)	754
BstYI	RGATCY	1 cut(s)	754
BsuRI	GGCC	1 cut(s)	267
BtsCI	GGATG	4 cut(s)	217, 279, 412, 756
BtsI	GCAGTG	1 cut(s)	145
BtsIMutI	CAGTG	1 cut(s)	145
Cac8I	GCNNGC	1 cut(s)	606
Cfr10I	RCCGGY	1 cut(s)	204
CseI	GACGC	2 cut(s)	419, 641
Csp6I	GTAC	2 cut(s)	194, 230
CviAII	CATG	3 cut(s)	149, 168, 460
CviJI	RGCY	7 cut(s)	208, 267, 472, 501, 532, 539, 608
CviKI_1	RGCY	7 cut(s)	208, 267, 472, 501, 532, 539, 608
CviQI	GTAC	2 cut(s)	194, 230
DdeI	CTNAG	1 cut(s)	564
DpnI	GATC	2 cut(s)	326, 756
DpnII	GATC	2 cut(s)	324, 754
DraI	TTTAAA	2 cut(s)	9, 201
Eam1104I	CTCTTC	2 cut(s)	588, 765
EarI	CTCTTC	2 cut(s)	588, 765
EciI	GGCGGA	1 cut(s)	408
Ecl136II	GAGCTC	1 cut(s)	472
Eco24I	GRGCYC	1 cut(s)	474
Eco53kI	GAGCTC	1 cut(s)	472
Eco57I	CTGAAG	1 cut(s)	569
EcoICRI	GAGCTC	1 cut(s)	472
EcoT38I	GRGCYC	1 cut(s)	474
FaeI	CATG	3 cut(s)	152, 171, 463
FaiI	YATR	9 cut(s)	26, 101, 150, 169, 329, 331, 461, 614, 699
FaqI	GGGAC	1 cut(s)	644
FatI	CATG	3 cut(s)	148, 167, 459
FauI	CCCGC	1 cut(s)	55
Fnu4HI	GCNGC	2 cut(s)	414, 499
FokI	GGATG	4 cut(s)	204, 266, 419, 763
FriOI	GRGCYC	1 cut(s)	474
Fsp4HI	GCNGC	2 cut(s)	414, 499
FspBI	CTAG	5 cut(s)	77, 155, 186, 233, 284
GluI	GCNGC	2 cut(s)	414, 499
GsuI	CTGGAG	1 cut(s)	246
HaeIII	GGCC	1 cut(s)	267
HapII	CCGG	1 cut(s)	205
HgaI	GACGC	2 cut(s)	419, 641
Hin1I	GRCGYC	1 cut(s)	411
Hin1II	CATG	3 cut(s)	152, 171, 463
HincII	GTYRAC	1 cut(s)	298
HindII	GTYRAC	1 cut(s)	298
HpaI	GTTAAC	1 cut(s)	298
HpaII	CCGG	1 cut(s)	205
HphI	GGTGA	2 cut(s)	45, 412
Hpy166II	GTNNAC	1 cut(s)	298
Hpy188I	TCNGA	1 cut(s)	565
Hpy188III	TCNNGA	3 cut(s)	77, 186, 681
Hpy8I	GTNNAC	1 cut(s)	298
Hpy99I	CGWCG	3 cut(s)	392, 470, 518
HpyAV	CCTTC	1 cut(s)	750
HpyCH4III	ACNGT	2 cut(s)	295, 302
HpyCH4IV	ACGT	2 cut(s)	94, 516
HpyCH4V	TGCA	5 cut(s)	99, 171, 307, 594, 761
HpyF10VI	GCNNNNNNNGC	5 cut(s)	469, 478, 507, 578, 605
HpyF3I	CTNAG	1 cut(s)	564
HpySE526I	ACGT	2 cut(s)	94, 516
Hsp92I	GRCGYC	1 cut(s)	411
Hsp92II	CATG	3 cut(s)	152, 171, 463
KspAI	GTTAAC	1 cut(s)	298
Kzo9I	GATC	2 cut(s)	324, 754
LguI	GCTCTTC	1 cut(s)	588
LmnI	GCTCC	1 cut(s)	478
LweI	GCATC	1 cut(s)	568
MaeI	CTAG	5 cut(s)	77, 155, 186, 233, 284
MaeII	ACGT	2 cut(s)	94, 516
MaeIII	GTNAC	2 cut(s)	235, 315
MalI	GATC	2 cut(s)	326, 756
MboI	GATC	2 cut(s)	324, 754
MboII	GAAGA	5 cut(s)	8, 301, 373, 575, 683
MfeI	CAATTG	1 cut(s)	250
MflI	RGATCY	1 cut(s)	754
MhlI	GDGCHC	2 cut(s)	167, 474
MluCI	AATT	3 cut(s)	28, 38, 250
MnlI	CCTC	7 cut(s)	346, 397, 428, 440, 445, 559, 594
MseI	TTAA	5 cut(s)	8, 200, 297, 524, 705
MslI	CAYNNNNRTG	2 cut(s)	176, 405
MspI	CCGG	1 cut(s)	205
MunI	CAATTG	1 cut(s)	250
MwoI	GCNNNNNNNGC	5 cut(s)	469, 478, 507, 578, 605
NdeII	GATC	2 cut(s)	324, 754
NlaIII	CATG	3 cut(s)	152, 171, 463
NlaIV	GGNNCC	1 cut(s)	756
NmuCI	GTSAC	1 cut(s)	315
NspI	RCATGY	1 cut(s)	152
NspV	TTCGAA	1 cut(s)	743
OliI	CACNNNNGTG	1 cut(s)	176
PciSI	GCTCTTC	1 cut(s)	588
PkrI	GCNGC	2 cut(s)	415, 500
PshBI	ATTAAT	1 cut(s)	524
PsiI	TTATAA	1 cut(s)	26
Psp124BI	GAGCTC	1 cut(s)	474
PspN4I	GGNNCC	1 cut(s)	756
PsrI	GAACNNNNNNTAC	2 cut(s)	205, 237
PsuI	RGATCY	1 cut(s)	754
RsaI	GTAC	2 cut(s)	195, 231
RsaNI	GTAC	2 cut(s)	194, 230
RseI	CAYNNNNRTG	2 cut(s)	176, 405
SacI	GAGCTC	1 cut(s)	474
SapI	GCTCTTC	1 cut(s)	588
SaqAI	TTAA	5 cut(s)	8, 200, 297, 524, 705
SatI	GCNGC	2 cut(s)	414, 499
Sau3AI	GATC	2 cut(s)	324, 754
ScaI	AGTACT	2 cut(s)	195, 231
SduI	GDGCHC	2 cut(s)	167, 474
SetI	ASST	7 cut(s)	58, 97, 474, 519, 541, 570, 678
SfaNI	GCATC	1 cut(s)	568
SfcI	CTRYAG	1 cut(s)	612
SfuI	TTCGAA	1 cut(s)	743
SmiMI	CAYNNNNRTG	2 cut(s)	176, 405
SpeI	ACTAGT	1 cut(s)	232
Sse9I	AATT	3 cut(s)	28, 38, 250
SsiI	CCGC	5 cut(s)	62, 393, 414, 498, 731
SspI	AATATT	2 cut(s)	660, 725
SspMI	CTAG	5 cut(s)	77, 155, 186, 233, 284
SstI	GAGCTC	1 cut(s)	474
TaaI	ACNGT	2 cut(s)	295, 302
TaiI	ACGT	2 cut(s)	97, 519
TaqI	TCGA	2 cut(s)	520, 743
TasI	AATT	3 cut(s)	28, 38, 250
TatI	WGTACW	2 cut(s)	193, 229
TauI	GCSGC	2 cut(s)	416, 501
Tru1I	TTAA	5 cut(s)	8, 200, 297, 524, 705
Tru9I	TTAA	5 cut(s)	8, 200, 297, 524, 705
TscAI	CASTG	1 cut(s)	145
TseFI	GTSAC	1 cut(s)	315
Tsp45I	GTSAC	1 cut(s)	315
TspDTI	ATGAA	2 cut(s)	290, 380
TspRI	CASTG	1 cut(s)	145
VspI	ATTAAT	1 cut(s)	524
XapI	RAATTY	2 cut(s)	28, 38
XbaI	TCTAGA	2 cut(s)	76, 185
XceI	RCATGY	1 cut(s)	152
XspI	CTAG	5 cut(s)	77, 155, 186, 233, 284
ZrmI	AGTACT	2 cut(s)	195, 231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.