FvH4_2g11240

TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0006093
Physical Location & Seq
Forward (+)
9774978 .. 9778643
3666 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g11240.t1

Sequence Viewer

Length: 435 bp
ATGAACCATAACCAAAGCAGCAGCCAGGGGCAGCAGCAATCGAGCGAAGGCAGGCATGACGATGACGATGCCTCTCTCTCTGAATTCCTTGCCTCCCTAATGGACTACACTCCCACCATTCCTGACGAGCTCGTCGAGCATTACCTTGCCAAGAGCGGCTTCCAGTGTCCCGACGTTCGATTGATTAGGCTGGTAGCTGTTGCCACACAAAAGTTTGTTGCTGAGGTTGCGACTGATGCTCTACAGCAATGCAAAACAAGACAGGCAGCAGTAGTGAAAGACAAAAGGGACAAACAGCAAAAGGATAAGCGCCCAATATTGACAATGGAAGACCTGTCAAAGGCATTGCGTGAGTACGGTGTCAATGTGAAGCACCAAGAATATTTCGCTGACAGCCCTTCAACTGGGATGGATCCTGCATCAAGAGAGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000082 GO:0000123 GO:0000125 GO:0000278 GO:0000428 GO:0001889 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003713 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005737 GO:0006139 GO:0006325 GO:0006351 GO:0006352 GO:0006355 GO:0006366 GO:0006367 GO:0006464 GO:0006473 GO:0006475 GO:0006508 GO:0006725 GO:0006807 GO:0006915 GO:0006996 GO:0007049 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008219 GO:0009058 GO:0009059 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0012501 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0016578 GO:0016579 GO:0016591 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0019899 GO:0022402 GO:0022607 GO:0030154 GO:0030331 GO:0030855 GO:0030880 GO:0030914 GO:0031248 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0033276 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0035257 GO:0035258 GO:0035264 GO:0036211 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043933 GO:0043966 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044770 GO:0044772 GO:0044798 GO:0044843 GO:0045935 GO:0046483 GO:0048471 GO:0048513 GO:0048518 GO:0048522 GO:0048589 GO:0048731 GO:0048732 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051098 GO:0051101 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051259 GO:0051260 GO:0051276 GO:0051427 GO:0055029 GO:0060255 GO:0060429 GO:0061008 GO:0061695 GO:0065003 GO:0065007 GO:0065009 GO:0070013 GO:0070063 GO:0070365 GO:0070461 GO:0070646 GO:0070647 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1902493 GO:1902494 GO:1902680 GO:1903047 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 ko05168 map03022 map05168
Pfam Domains
Protein Families
TFIID_30kDa

Protein Analysis

145

Amino Acids

16.19

Weight (kDa)

5.22

Isoelectric Point (pI)

55.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAF10 PF03540 26 - 129 8.7e-40 Transcription initiation factor TFIID 23-30kDa subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 131
AccBSI CCGCTC 1 cut(s) 156
AciI CCGC 1 cut(s) 156
AclWI GGATC 2 cut(s) 407, 420
AcsI RAATTY 1 cut(s) 83
AfaI GTAC 1 cut(s) 356
AfiI CCNNNNNNNGG 2 cut(s) 340, 404
AgsI TTSAA 1 cut(s) 402
AjnI CCWGG 1 cut(s) 24
AjuI GAANNNNNNNTTGG 2 cut(s) 143, 175
AluBI AGCT 2 cut(s) 130, 197
AluI AGCT 2 cut(s) 130, 197
Alw21I GWGCWC 1 cut(s) 132
AlwI GGATC 2 cut(s) 407, 420
ApeKI GCWGC 5 cut(s) 18, 21, 31, 34, 266
ApoI RAATTY 1 cut(s) 83
AspLEI GCGC 1 cut(s) 312
BamHI GGATCC 1 cut(s) 412
BanII GRGCYC 1 cut(s) 132
BbsI GAAGAC 1 cut(s) 336
Bbv12I GWGCWC 1 cut(s) 132
BbvCI CCTCAGC 1 cut(s) 222
BbvI GCAGC 5 cut(s) 30, 33, 43, 46, 278
BccI CCATC 1 cut(s) 403
BcgI CGANNNNNNTGC 2 cut(s) 50, 84
BciT130I CCWGG 1 cut(s) 26
BfmI CTRYAG 1 cut(s) 242
BfoI RGCGCY 1 cut(s) 313
BisI GCNGC 6 cut(s) 19, 22, 32, 35, 157, 267
BlsI GCNGC 6 cut(s) 20, 23, 33, 36, 158, 268
Bme1390I CCNGG 1 cut(s) 26
BmiI GGNNCC 1 cut(s) 414
BmrFI CCNGG 1 cut(s) 26
BmrI ACTGGG 1 cut(s) 414
BmsI GCATC 3 cut(s) 58, 226, 428
BmuI ACTGGG 1 cut(s) 414
BpiI GAAGAC 1 cut(s) 336
Bpu10I CCTNAGC 1 cut(s) 222
BsaJI CCNNGG 1 cut(s) 25
Bsc4I CCNNNNNNNGG 2 cut(s) 340, 404
Bse1I ACTGG 2 cut(s) 163, 409
Bse3DI GCAATG 2 cut(s) 254, 344
BseBI CCWGG 1 cut(s) 26
BseDI CCNNGG 1 cut(s) 25
BseGI GGATG 1 cut(s) 414
BseLI CCNNNNNNNGG 2 cut(s) 340, 404
BseMI GCAATG 2 cut(s) 254, 344
BseMII CTCAG 1 cut(s) 213
BseNI ACTGG 2 cut(s) 163, 409
BseXI GCAGC 5 cut(s) 30, 33, 43, 46, 278
BsiHKAI GWGCWC 1 cut(s) 132
BslFI GGGAC 2 cut(s) 153, 302
BslI CCNNNNNNNGG 2 cut(s) 340, 404
BsmFI GGGAC 2 cut(s) 153, 302
Bsp1286I GDGCHC 1 cut(s) 132
Bsp143I GATC 1 cut(s) 412
BspACI CCGC 1 cut(s) 156
BspCNI CTCAG 1 cut(s) 214
BspLI GGNNCC 1 cut(s) 414
BspPI GGATC 2 cut(s) 407, 420
BsrBI CCGCTC 1 cut(s) 156
BsrDI GCAATG 2 cut(s) 254, 344
BsrI ACTGG 2 cut(s) 163, 409
BssECI CCNNGG 1 cut(s) 25
BssMI GATC 1 cut(s) 412
Bst2UI CCWGG 1 cut(s) 26
Bst4CI ACNGT 1 cut(s) 359
BstC8I GCNNGC 1 cut(s) 53
BstDEI CTNAG 1 cut(s) 222
BstENI CCTNNNNNAGG 1 cut(s) 338
BstF5I GGATG 1 cut(s) 414
BstH2I RGCGCY 1 cut(s) 313
BstHHI GCGC 1 cut(s) 312
BstKTI GATC 1 cut(s) 415
BstMBI GATC 1 cut(s) 412
BstMWI GCNNNNNNNGC 3 cut(s) 136, 227, 236
BstNI CCWGG 1 cut(s) 26
BstSCI CCNGG 1 cut(s) 24
BstSFI CTRYAG 1 cut(s) 242
BstV1I GCAGC 5 cut(s) 30, 33, 43, 46, 278
BstV2I GAAGAC 1 cut(s) 336
BstX2I RGATCY 1 cut(s) 412
BstYI RGATCY 1 cut(s) 412
BtsCI GGATG 1 cut(s) 414
BtsIMutI CAGTG 1 cut(s) 170
Cac8I GCNNGC 1 cut(s) 53
CfoI GCGC 1 cut(s) 312
Csp6I GTAC 1 cut(s) 355
CviAII CATG 1 cut(s) 56
CviJI RGCY 6 cut(s) 24, 130, 159, 190, 197, 396
CviKI_1 RGCY 6 cut(s) 24, 130, 159, 190, 197, 396
CviQI GTAC 1 cut(s) 355
DdeI CTNAG 1 cut(s) 222
DpnI GATC 1 cut(s) 414
DpnII GATC 1 cut(s) 412
DrdI GACNNNNNNGTC 1 cut(s) 131
DseDI GACNNNNNNGTC 1 cut(s) 131
Ecl136II GAGCTC 1 cut(s) 130
Eco24I GRGCYC 1 cut(s) 132
Eco53kI GAGCTC 1 cut(s) 130
EcoICRI GAGCTC 1 cut(s) 130
EcoNI CCTNNNNNAGG 1 cut(s) 338
EcoRI GAATTC 1 cut(s) 83
EcoRII CCWGG 1 cut(s) 24
EcoT38I GRGCYC 1 cut(s) 132
FaeI CATG 1 cut(s) 59
FaiI YATR 2 cut(s) 9, 57
FalI AAGNNNNNCTT 2 cut(s) 143, 175
FaqI GGGAC 2 cut(s) 153, 302
FatI CATG 1 cut(s) 55
Fnu4HI GCNGC 6 cut(s) 19, 22, 32, 35, 157, 267
FokI GGATG 1 cut(s) 421
FriOI GRGCYC 1 cut(s) 132
Fsp4HI GCNGC 6 cut(s) 19, 22, 32, 35, 157, 267
GlaI GCGC 1 cut(s) 311
GluI GCNGC 6 cut(s) 19, 22, 32, 35, 157, 267
HaeII RGCGCY 1 cut(s) 313
HhaI GCGC 1 cut(s) 312
Hin1II CATG 1 cut(s) 59
Hin6I GCGC 1 cut(s) 310
HinP1I GCGC 1 cut(s) 310
Hpy188I TCNGA 1 cut(s) 82
Hpy188III TCNNGA 3 cut(s) 122, 170, 423
Hpy99I CGWCG 2 cut(s) 137, 176
HpyAV CCTTC 2 cut(s) 41, 408
HpyCH4III ACNGT 1 cut(s) 359
HpyCH4IV ACGT 1 cut(s) 174
HpyCH4V TGCA 2 cut(s) 252, 419
HpyF10VI GCNNNNNNNGC 3 cut(s) 136, 227, 236
HpyF3I CTNAG 1 cut(s) 222
HpySE526I ACGT 1 cut(s) 174
Hsp92II CATG 1 cut(s) 59
HspAI GCGC 1 cut(s) 310
Kzo9I GATC 1 cut(s) 412
Lsp1109I GCAGC 5 cut(s) 30, 33, 43, 46, 278
LweI GCATC 3 cut(s) 58, 226, 428
MaeII ACGT 1 cut(s) 174
MalI GATC 1 cut(s) 414
MbiI CCGCTC 1 cut(s) 156
MboI GATC 1 cut(s) 412
MboII GAAGA 1 cut(s) 341
MflI RGATCY 1 cut(s) 412
MhlI GDGCHC 1 cut(s) 132
MluCI AATT 1 cut(s) 83
MnlI CCTC 4 cut(s) 82, 103, 217, 421
MslI CAYNNNNRTG 1 cut(s) 60
MspR9I CCNGG 1 cut(s) 26
MvaI CCWGG 1 cut(s) 26
MwoI GCNNNNNNNGC 3 cut(s) 136, 227, 236
NdeII GATC 1 cut(s) 412
NlaIII CATG 1 cut(s) 59
NlaIV GGNNCC 1 cut(s) 414
PcsI WCGNNNNNNNCGW 1 cut(s) 132
PkrI GCNGC 6 cut(s) 20, 23, 33, 36, 158, 268
Psp124BI GAGCTC 1 cut(s) 132
Psp6I CCWGG 1 cut(s) 24
PspGI CCWGG 1 cut(s) 24
PspN4I GGNNCC 1 cut(s) 414
PsuI RGATCY 1 cut(s) 412
RsaI GTAC 1 cut(s) 356
RsaNI GTAC 1 cut(s) 355
RseI CAYNNNNRTG 1 cut(s) 60
SacI GAGCTC 1 cut(s) 132
SatI GCNGC 6 cut(s) 19, 22, 32, 35, 157, 267
Sau3AI GATC 1 cut(s) 412
ScrFI CCNGG 1 cut(s) 26
SduI GDGCHC 1 cut(s) 132
SetI ASST 6 cut(s) 132, 147, 177, 199, 228, 336
SfaNI GCATC 3 cut(s) 58, 226, 428
SfcI CTRYAG 1 cut(s) 242
SmiMI CAYNNNNRTG 1 cut(s) 60
Sse9I AATT 1 cut(s) 83
SsiI CCGC 1 cut(s) 156
SspI AATATT 2 cut(s) 318, 383
SstI GAGCTC 1 cut(s) 132
StyD4I CCNGG 1 cut(s) 24
TaaI ACNGT 1 cut(s) 359
TaiI ACGT 1 cut(s) 177
TaqI TCGA 3 cut(s) 41, 135, 178
TasI AATT 1 cut(s) 83
TauI GCSGC 1 cut(s) 159
TscAI CASTG 1 cut(s) 170
TseI GCWGC 5 cut(s) 18, 21, 31, 34, 266
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 170
XagI CCTNNNNNAGG 1 cut(s) 338
XapI RAATTY 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.