Rw6G014540

TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0006093
Physical Location & Seq
Forward (+)
26873536 .. 26877473
3938 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G014540.1

Sequence Viewer

Length: 423 bp
ATGAACCATAACCACCAAAGCCAGCAATCGAGCGAAGGCAGGCACGACGATGACGAGGCATCTCTCTCTGAATTCCTCGCCTCCCTAATGGACTACACTCCCACCATACCCGACGAGCTCGTGGAGCATTACTTGGCCAAGAGCGGCTTCCAGTGTCCCGACGTTCGATTAATTAGGCTGGTAGCTGTTGCCACACAAAAGTTTGTCGCTGAGGTTGCAACTGATGCTCTACAGCAATGCAAAGCAAGACAGGCAGCAGTGGTGAAAGACAAAAGGGACAAACAGCAAAAGGATAAGCGCCCAATATTGACTATGGAAGACCTGTCAAAGGCATTGCGTGAGTATGGCGTCAATGTGAAGCACCAAGAATATTTTGCTGACAGCCCTTCAACTGGGATGGATCCTGCATCAAGAGAGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000082 GO:0000123 GO:0000125 GO:0000278 GO:0000428 GO:0001889 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003713 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005737 GO:0006139 GO:0006325 GO:0006351 GO:0006352 GO:0006355 GO:0006366 GO:0006367 GO:0006464 GO:0006473 GO:0006475 GO:0006508 GO:0006725 GO:0006807 GO:0006915 GO:0006996 GO:0007049 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008219 GO:0009058 GO:0009059 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0012501 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0016578 GO:0016579 GO:0016591 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0019899 GO:0022402 GO:0022607 GO:0030154 GO:0030331 GO:0030855 GO:0030880 GO:0030914 GO:0031248 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0033276 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0035257 GO:0035258 GO:0035264 GO:0036211 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043933 GO:0043966 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044770 GO:0044772 GO:0044798 GO:0044843 GO:0045935 GO:0046483 GO:0048471 GO:0048513 GO:0048518 GO:0048522 GO:0048589 GO:0048731 GO:0048732 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051098 GO:0051101 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051259 GO:0051260 GO:0051276 GO:0051427 GO:0055029 GO:0060255 GO:0060429 GO:0061008 GO:0061695 GO:0065003 GO:0065007 GO:0065009 GO:0070013 GO:0070063 GO:0070365 GO:0070461 GO:0070646 GO:0070647 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1902493 GO:1902494 GO:1902680 GO:1903047 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 ko05168 map03022 map05168
Pfam Domains
Protein Families
TFIID_30kDa

Protein Analysis

140

Amino Acids

15.82

Weight (kDa)

5.36

Isoelectric Point (pI)

53.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAF10 PF03540 22 - 125 9.3e-40 Transcription initiation factor TFIID 23-30kDa subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 144
AciI CCGC 1 cut(s) 144
AclWI GGATC 2 cut(s) 395, 408
AcoI YGGCCR 1 cut(s) 135
AcsI RAATTY 1 cut(s) 71
AcyI GRCGYC 1 cut(s) 348
AfiI CCNNNNNNNGG 2 cut(s) 328, 392
AgsI TTSAA 1 cut(s) 390
AjuI GAANNNNNNNTTGG 2 cut(s) 131, 163
AluBI AGCT 2 cut(s) 118, 185
AluI AGCT 2 cut(s) 118, 185
Alw21I GWGCWC 1 cut(s) 120
AlwI GGATC 2 cut(s) 395, 408
AoxI GGCC 1 cut(s) 135
ApeKI GCWGC 1 cut(s) 254
ApoI RAATTY 1 cut(s) 71
AseI ATTAAT 1 cut(s) 170
AspLEI GCGC 1 cut(s) 300
AsuHPI GGTGA 1 cut(s) 274
BalI TGGCCA 1 cut(s) 137
BamHI GGATCC 1 cut(s) 400
BanII GRGCYC 1 cut(s) 120
BauI CACGAG 1 cut(s) 119
BbsI GAAGAC 1 cut(s) 324
Bbv12I GWGCWC 1 cut(s) 120
BbvCI CCTCAGC 1 cut(s) 210
BbvI GCAGC 1 cut(s) 266
BccI CCATC 1 cut(s) 391
BfmI CTRYAG 1 cut(s) 230
BfoI RGCGCY 1 cut(s) 301
BisI GCNGC 2 cut(s) 145, 255
BlsI GCNGC 2 cut(s) 146, 256
BmiI GGNNCC 1 cut(s) 402
BmrI ACTGGG 1 cut(s) 402
BmsI GCATC 3 cut(s) 68, 214, 416
BmuI ACTGGG 1 cut(s) 402
BpiI GAAGAC 1 cut(s) 324
Bpu10I CCTNAGC 1 cut(s) 210
BsaHI GRCGYC 1 cut(s) 348
Bsc4I CCNNNNNNNGG 2 cut(s) 328, 392
Bse1I ACTGG 2 cut(s) 151, 397
Bse3DI GCAATG 2 cut(s) 242, 332
BseGI GGATG 1 cut(s) 402
BseLI CCNNNNNNNGG 2 cut(s) 328, 392
BseMI GCAATG 2 cut(s) 242, 332
BseMII CTCAG 1 cut(s) 201
BseNI ACTGG 2 cut(s) 151, 397
BseXI GCAGC 1 cut(s) 266
BshFI GGCC 1 cut(s) 137
BsiHKAI GWGCWC 1 cut(s) 120
BslFI GGGAC 2 cut(s) 141, 290
BslI CCNNNNNNNGG 2 cut(s) 328, 392
BsmFI GGGAC 2 cut(s) 141, 290
BsnI GGCC 1 cut(s) 137
Bsp1286I GDGCHC 1 cut(s) 120
Bsp143I GATC 1 cut(s) 400
BspACI CCGC 1 cut(s) 144
BspANI GGCC 1 cut(s) 137
BspCNI CTCAG 1 cut(s) 202
BspLI GGNNCC 1 cut(s) 402
BspPI GGATC 2 cut(s) 395, 408
BsrBI CCGCTC 1 cut(s) 144
BsrDI GCAATG 2 cut(s) 242, 332
BsrI ACTGG 2 cut(s) 151, 397
BssMI GATC 1 cut(s) 400
BssNI GRCGYC 1 cut(s) 348
BssSI CACGAG 1 cut(s) 119
Bst2BI CACGAG 1 cut(s) 119
BstACI GRCGYC 1 cut(s) 348
BstAPI GCANNNNNTGC 1 cut(s) 224
BstC8I GCNNGC 2 cut(s) 23, 41
BstDEI CTNAG 1 cut(s) 210
BstENI CCTNNNNNAGG 1 cut(s) 326
BstF5I GGATG 1 cut(s) 402
BstH2I RGCGCY 1 cut(s) 301
BstHHI GCGC 1 cut(s) 300
BstKTI GATC 1 cut(s) 403
BstMBI GATC 1 cut(s) 400
BstMWI GCNNNNNNNGC 4 cut(s) 124, 215, 224, 251
BstSFI CTRYAG 1 cut(s) 230
BstV1I GCAGC 1 cut(s) 266
BstV2I GAAGAC 1 cut(s) 324
BstX2I RGATCY 1 cut(s) 400
BstYI RGATCY 1 cut(s) 400
BsuRI GGCC 1 cut(s) 137
BtsCI GGATG 1 cut(s) 402
BtsI GCAGTG 1 cut(s) 264
BtsIMutI CAGTG 2 cut(s) 158, 264
Cac8I GCNNGC 2 cut(s) 23, 41
CfoI GCGC 1 cut(s) 300
CseI GACGC 1 cut(s) 337
CviJI RGCY 7 cut(s) 21, 118, 137, 147, 178, 185, 384
CviKI_1 RGCY 7 cut(s) 21, 118, 137, 147, 178, 185, 384
DdeI CTNAG 1 cut(s) 210
DpnI GATC 1 cut(s) 402
DpnII GATC 1 cut(s) 400
EaeI YGGCCR 1 cut(s) 135
Ecl136II GAGCTC 1 cut(s) 118
Eco24I GRGCYC 1 cut(s) 120
Eco53kI GAGCTC 1 cut(s) 118
EcoICRI GAGCTC 1 cut(s) 118
EcoNI CCTNNNNNAGG 1 cut(s) 326
EcoRI GAATTC 1 cut(s) 71
EcoT38I GRGCYC 1 cut(s) 120
FaiI YATR 4 cut(s) 9, 107, 314, 345
FalI AAGNNNNNCTT 2 cut(s) 131, 163
FaqI GGGAC 2 cut(s) 141, 290
Fnu4HI GCNGC 2 cut(s) 145, 255
FokI GGATG 1 cut(s) 409
FriOI GRGCYC 1 cut(s) 120
Fsp4HI GCNGC 2 cut(s) 145, 255
GlaI GCGC 1 cut(s) 299
GluI GCNGC 2 cut(s) 145, 255
HaeII RGCGCY 1 cut(s) 301
HaeIII GGCC 1 cut(s) 137
HgaI GACGC 1 cut(s) 337
HhaI GCGC 1 cut(s) 300
Hin1I GRCGYC 1 cut(s) 348
Hin6I GCGC 1 cut(s) 298
HinP1I GCGC 1 cut(s) 298
HphI GGTGA 1 cut(s) 274
Hpy188I TCNGA 1 cut(s) 70
Hpy188III TCNNGA 2 cut(s) 158, 411
Hpy99I CGWCG 3 cut(s) 50, 116, 164
HpyAV CCTTC 2 cut(s) 29, 396
HpyCH4IV ACGT 1 cut(s) 162
HpyCH4V TGCA 3 cut(s) 218, 240, 407
HpyF10VI GCNNNNNNNGC 4 cut(s) 124, 215, 224, 251
HpyF3I CTNAG 1 cut(s) 210
HpySE526I ACGT 1 cut(s) 162
Hsp92I GRCGYC 1 cut(s) 348
HspAI GCGC 1 cut(s) 298
Kzo9I GATC 1 cut(s) 400
LmnI GCTCC 1 cut(s) 124
LpnPI CCDG 8 cut(s) 25, 35, 164, 164, 236, 335, 378, 417
Lsp1109I GCAGC 1 cut(s) 266
LweI GCATC 3 cut(s) 68, 214, 416
MaeII ACGT 1 cut(s) 162
MalI GATC 1 cut(s) 402
MbiI CCGCTC 1 cut(s) 144
MboI GATC 1 cut(s) 400
MboII GAAGA 1 cut(s) 329
MflI RGATCY 1 cut(s) 400
MhlI GDGCHC 1 cut(s) 120
MlsI TGGCCA 1 cut(s) 137
MluCI AATT 2 cut(s) 71, 171
MluNI TGGCCA 1 cut(s) 137
MnlI CCTC 5 cut(s) 49, 86, 91, 205, 409
Mox20I TGGCCA 1 cut(s) 137
MscI TGGCCA 1 cut(s) 137
MseI TTAA 1 cut(s) 170
MslI CAYNNNNRTG 1 cut(s) 48
Msp20I TGGCCA 1 cut(s) 137
MwoI GCNNNNNNNGC 4 cut(s) 124, 215, 224, 251
NdeII GATC 1 cut(s) 400
NlaIV GGNNCC 1 cut(s) 402
PcsI WCGNNNNNNNCGW 1 cut(s) 51
PkrI GCNGC 2 cut(s) 146, 256
PshBI ATTAAT 1 cut(s) 170
Psp124BI GAGCTC 1 cut(s) 120
PspN4I GGNNCC 1 cut(s) 402
PsuI RGATCY 1 cut(s) 400
RseI CAYNNNNRTG 1 cut(s) 48
SacI GAGCTC 1 cut(s) 120
SaqAI TTAA 1 cut(s) 170
SatI GCNGC 2 cut(s) 145, 255
Sau3AI GATC 1 cut(s) 400
SduI GDGCHC 1 cut(s) 120
SetI ASST 5 cut(s) 120, 165, 187, 216, 324
SfaNI GCATC 3 cut(s) 68, 214, 416
SfcI CTRYAG 1 cut(s) 230
SmiMI CAYNNNNRTG 1 cut(s) 48
Sse9I AATT 2 cut(s) 71, 171
SsiI CCGC 1 cut(s) 144
SspI AATATT 2 cut(s) 306, 371
SstI GAGCTC 1 cut(s) 120
TaiI ACGT 1 cut(s) 165
TaqI TCGA 2 cut(s) 29, 166
TasI AATT 2 cut(s) 71, 171
TauI GCSGC 1 cut(s) 147
Tru1I TTAA 1 cut(s) 170
Tru9I TTAA 1 cut(s) 170
TscAI CASTG 2 cut(s) 158, 264
TseI GCWGC 1 cut(s) 254
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 158, 264
VspI ATTAAT 1 cut(s) 170
XagI CCTNNNNNAGG 1 cut(s) 326
XapI RAATTY 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.