AT4G31830

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0006740
Physical Location & Seq
Reverse (-)
15400604 .. 15401225
622 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G31830.1

Sequence Viewer

Length: 303 bp
ATGGCCGGAGAAGAAGACTGGAGAAAAACAGCAGATACGACGAAGATGAGCTCGGAGGGAGTAAAAGCTGCCGGCGTTGAGTCATCAAAGAGGCCGCCAGGAAGTAATCCAGGTGGTGTTCTTCATCAACGCCGTAACTTGCCATACAGTTACACGACGATGGCTCTAGCCGGATTAGCTATCTCGGGGGCCATCATGTACACTGTTATGTATGCTAAGAAGAAGCCGGAAGCCACTGCCACTGATGTAGCTAAGGCTGCCACAGGGACGGCTAAACCTGAAGATACACATCCAAGAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

10.6

Weight (kDa)

9.6

Isoelectric Point (pI)

50.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 95
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 300
AfaI GTAC 1 cut(s) 200
AjnI CCWGG 2 cut(s) 97, 109
AluBI AGCT 4 cut(s) 51, 68, 179, 251
AluI AGCT 4 cut(s) 51, 68, 179, 251
Alw21I GWGCWC 1 cut(s) 53
Ama87I CYCGRG 1 cut(s) 184
AoxI GGCC 3 cut(s) 3, 92, 189
ApeKI GCWGC 2 cut(s) 68, 257
AspS9I GGNCC 1 cut(s) 189
AvaI CYCGRG 1 cut(s) 184
BanII GRGCYC 1 cut(s) 53
BbsI GAAGAC 1 cut(s) 21
Bbv12I GWGCWC 1 cut(s) 53
BbvI GCAGC 2 cut(s) 55, 244
BccI CCATC 2 cut(s) 154, 200
BceAI ACGGC 2 cut(s) 117, 285
BciT130I CCWGG 2 cut(s) 99, 111
BfaI CTAG 1 cut(s) 167
BisI GCNGC 3 cut(s) 69, 95, 258
BlsI GCNGC 3 cut(s) 70, 96, 259
Bme1390I CCNGG 2 cut(s) 99, 111
BmeT110I CYCGRG 1 cut(s) 184
BmgT120I GGNCC 1 cut(s) 189
BmiI GGNNCC 1 cut(s) 190
BmrFI CCNGG 2 cut(s) 99, 111
BpiI GAAGAC 1 cut(s) 21
BpmI CTGGAG 1 cut(s) 40
Bpu10I CCTNAGC 1 cut(s) 252
BsaBI GATNNNNATC 1 cut(s) 288
Bse118I RCCGGY 1 cut(s) 71
Bse1I ACTGG 1 cut(s) 23
Bse8I GATNNNNATC 1 cut(s) 288
BseBI CCWGG 2 cut(s) 99, 111
BseGI GGATG 1 cut(s) 289
BseJI GATNNNNATC 1 cut(s) 288
BseNI ACTGG 1 cut(s) 23
BseXI GCAGC 2 cut(s) 55, 244
BshFI GGCC 3 cut(s) 5, 94, 191
BsiHKAI GWGCWC 1 cut(s) 53
BsiHKCI CYCGRG 1 cut(s) 184
BsiSI CCGG 4 cut(s) 6, 72, 171, 227
BslFI GGGAC 1 cut(s) 280
BsmFI GGGAC 1 cut(s) 280
BsnI GGCC 3 cut(s) 5, 94, 191
BsoBI CYCGRG 1 cut(s) 184
Bsp1286I GDGCHC 1 cut(s) 53
Bsp1407I TGTACA 1 cut(s) 198
BspACI CCGC 1 cut(s) 95
BspANI GGCC 3 cut(s) 5, 94, 191
BspLI GGNNCC 1 cut(s) 190
BsrFI RCCGGY 1 cut(s) 71
BsrGI TGTACA 1 cut(s) 198
BsrI ACTGG 1 cut(s) 23
BssAI RCCGGY 1 cut(s) 71
Bst2UI CCWGG 2 cut(s) 99, 111
Bst4CI ACNGT 2 cut(s) 149, 205
BstAUI TGTACA 1 cut(s) 198
BstC8I GCNNGC 1 cut(s) 73
BstDEI CTNAG 2 cut(s) 216, 252
BstF5I GGATG 1 cut(s) 289
BstMWI GCNNNNNNNGC 2 cut(s) 176, 257
BstNI CCWGG 2 cut(s) 99, 111
BstSCI CCNGG 2 cut(s) 97, 109
BstV1I GCAGC 2 cut(s) 55, 244
BstV2I GAAGAC 1 cut(s) 21
BsuRI GGCC 3 cut(s) 5, 94, 191
BtsCI GGATG 1 cut(s) 289
BtsI GCAGTG 1 cut(s) 234
BtsIMutI CAGTG 3 cut(s) 201, 234, 240
Cac8I GCNNGC 1 cut(s) 73
Cfr10I RCCGGY 1 cut(s) 71
Cfr13I GGNCC 1 cut(s) 189
Csp6I GTAC 1 cut(s) 199
CviAII CATG 1 cut(s) 196
CviQI GTAC 1 cut(s) 199
DdeI CTNAG 2 cut(s) 216, 252
EaeI YGGCCR 1 cut(s) 3
Ecl136II GAGCTC 1 cut(s) 51
Eco24I GRGCYC 1 cut(s) 53
Eco53kI GAGCTC 1 cut(s) 51
Eco57I CTGAAG 1 cut(s) 300
Eco88I CYCGRG 1 cut(s) 184
EcoICRI GAGCTC 1 cut(s) 51
EcoRII CCWGG 2 cut(s) 97, 109
EcoT38I GRGCYC 1 cut(s) 53
FaeI CATG 1 cut(s) 199
FaiI YATR 4 cut(s) 145, 197, 209, 213
FaqI GGGAC 1 cut(s) 280
FatI CATG 1 cut(s) 195
Fnu4HI GCNGC 3 cut(s) 69, 95, 258
FokI GGATG 1 cut(s) 276
FriOI GRGCYC 1 cut(s) 53
Fsp4HI GCNGC 3 cut(s) 69, 95, 258
FspBI CTAG 1 cut(s) 167
GluI GCNGC 3 cut(s) 69, 95, 258
GsuI CTGGAG 1 cut(s) 40
HaeIII GGCC 3 cut(s) 5, 94, 191
HapII CCGG 4 cut(s) 6, 72, 171, 227
Hin1II CATG 1 cut(s) 199
HinfI GANTC 1 cut(s) 80
HpaII CCGG 4 cut(s) 6, 72, 171, 227
Hpy166II GTNNAC 1 cut(s) 201
Hpy188I TCNGA 1 cut(s) 55
Hpy8I GTNNAC 1 cut(s) 201
Hpy99I CGWCG 2 cut(s) 43, 160
HpyCH4III ACNGT 2 cut(s) 149, 205
HpyF10VI GCNNNNNNNGC 2 cut(s) 176, 257
HpyF3I CTNAG 2 cut(s) 216, 252
Hsp92II CATG 1 cut(s) 199
KroI GCCGGC 1 cut(s) 71
KroNI GCCGGC 1 cut(s) 73
Lsp1109I GCAGC 2 cut(s) 55, 244
MaeI CTAG 1 cut(s) 167
MaeIII GTNAC 2 cut(s) 134, 149
MboII GAAGA 6 cut(s) 23, 26, 55, 113, 232, 293
MhlI GDGCHC 1 cut(s) 53
MlyI GAGTC 1 cut(s) 89
MnlI CCTC 2 cut(s) 49, 84
MroNI GCCGGC 1 cut(s) 71
MslI CAYNNNNRTG 2 cut(s) 158, 206
MspI CCGG 4 cut(s) 6, 72, 171, 227
MspR9I CCNGG 2 cut(s) 99, 111
MvaI CCWGG 2 cut(s) 99, 111
MwoI GCNNNNNNNGC 2 cut(s) 176, 257
NaeI GCCGGC 1 cut(s) 73
NgoMIV GCCGGC 1 cut(s) 71
NlaIII CATG 1 cut(s) 199
NlaIV GGNNCC 1 cut(s) 190
PdiI GCCGGC 1 cut(s) 73
PkrI GCNGC 3 cut(s) 70, 96, 259
PleI GAGTC 1 cut(s) 88
PpsI GAGTC 1 cut(s) 88
Psp124BI GAGCTC 1 cut(s) 53
Psp6I CCWGG 2 cut(s) 97, 109
PspGI CCWGG 2 cut(s) 97, 109
PspN4I GGNNCC 1 cut(s) 190
PspPI GGNCC 1 cut(s) 189
RsaI GTAC 1 cut(s) 200
RsaNI GTAC 1 cut(s) 199
RseI CAYNNNNRTG 2 cut(s) 158, 206
SacI GAGCTC 1 cut(s) 53
SatI GCNGC 3 cut(s) 69, 95, 258
Sau96I GGNCC 1 cut(s) 189
SchI GAGTC 1 cut(s) 89
ScrFI CCNGG 2 cut(s) 99, 111
SduI GDGCHC 1 cut(s) 53
SetI ASST 6 cut(s) 53, 70, 115, 181, 253, 280
SmiMI CAYNNNNRTG 2 cut(s) 158, 206
SsiI CCGC 1 cut(s) 95
SspMI CTAG 1 cut(s) 167
SstI GAGCTC 1 cut(s) 53
StyD4I CCNGG 2 cut(s) 97, 109
TaaI ACNGT 2 cut(s) 149, 205
TatI WGTACW 1 cut(s) 198
TauI GCSGC 1 cut(s) 97
TscAI CASTG 3 cut(s) 208, 241, 247
TseI GCWGC 2 cut(s) 68, 257
TspDTI ATGAA 1 cut(s) 113
TspRI CASTG 3 cut(s) 208, 241, 247
XspI CTAG 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.