Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0006740

Physical Location & Seq

Genomic Coordinates Reverse (-)

9457866 .. 9458228

Gene Structure 363 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011436

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGCAGCCGGGAATGAAGAGTGGAGGAAAACGGCAGACACTCACAAAATGAGTCCAGAGGAAGTGAAAAGGGCAGGAGTGGAGGGATCAAAAAGGCCACCTGGCCATAACCCTGGGGGTGTTCTTCACCAGAGGCGCAACCTTCCTATTAGCCCCACAGGGGTGCTCCTCGGCGGCTTCCTCATCTGCGCCGCCATAGGCTACTTCACCCTCTACGCCATGAAAAAACCCGAAGCCTCTGCACGAGATGTTGCCAGGGTTTCCACCAATGTCGCCGACCCTGCTGAGGACACAAAACCCAGGCCGGGTGACACAGTGCCCACGCCAGGCCGGAAGGGAACTAGTGGTAGCGCTGTCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

121

Amino Acids

12.68

Weight (kDa)

9.66

Isoelectric Point (pI)

49.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31830
malus_domestica	MD08G1056200.v1.1 MD15G1040800.v1.1 MD15G1144300.v1.1
prunus_persica	Prupe.1G394000_v2.0.a1 Prupe.7G263500_v2.0.a1
pyrus_communis	pycom02g00590
rosa_chinensis	RchiOBHm_Chr6g0299391
rosa_laevigata	RLG00000011436 RLG00000015702
rosa_multiflora	Rmu_sc0013965.1_g000003 Rmu_sc0017526.1_g000003 Rmu_ssc0000347.1_g000006
rosa_roxburghii	Rroxscaffold_7G00168730
rosa_rugosa	Rorug01G0461500 Rorug06G0287900
rosa_samantha	Rh2AG010400 Rh2BG011000 Rh2CG011900 Rh2DG012900 Rh6AG399400 Rh6BG408000 Rh6CG413800 Rh6DG400600
rosa_wichuraiana	Rw2G000930 Rw6G034970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	174, 192
AclWI	GGATC	1 cut(s)	94
AcoI	YGGCCR	1 cut(s)	103
AfeI	AGCGCT	1 cut(s)	352
AfiI	CCNNNNNNNGG	4 cut(s)	160, 286, 305, 326
AhlI	ACTAGT	1 cut(s)	341
AjnI	CCWGG	5 cut(s)	100, 112, 254, 299, 325
AleI	CACNNNNGTG	1 cut(s)	161
Alw21I	GWGCWC	1 cut(s)	168
AlwI	GGATC	1 cut(s)	94
Aor51HI	AGCGCT	1 cut(s)	352
AoxI	GGCC	4 cut(s)	95, 103, 302, 328
ApeKI	GCWGC	1 cut(s)	5
AspLEI	GCGC	3 cut(s)	138, 191, 353
AsuC2I	CCSGG	2 cut(s)	10, 306
AsuHPI	GGTGA	3 cut(s)	119, 199, 320
BaeGI	GKGCMC	1 cut(s)	321
BalI	TGGCCA	1 cut(s)	105
BauI	CACGAG	1 cut(s)	243
Bbv12I	GWGCWC	1 cut(s)	168
BbvCI	CCTCAGC	1 cut(s)	285
BbvI	GCAGC	1 cut(s)	17
BceAI	ACGGC	1 cut(s)	48
BcgI	CGANNNNNNTGC	2 cut(s)	221, 255
BciT130I	CCWGG	5 cut(s)	102, 114, 256, 301, 327
BcnI	CCSGG	2 cut(s)	10, 306
BcuI	ACTAGT	1 cut(s)	341
BfaI	CTAG	1 cut(s)	342
BfoI	RGCGCY	1 cut(s)	354
BisI	GCNGC	3 cut(s)	6, 175, 192
BlsI	GCNGC	3 cut(s)	7, 176, 193
Bme1390I	CCNGG	7 cut(s)	10, 102, 114, 256, 301, 306, 327
BmrFI	CCNGG	7 cut(s)	10, 102, 114, 256, 301, 306, 327
Bpu10I	CCTNAGC	1 cut(s)	285
BpuMI	CCSGG	2 cut(s)	10, 306
BsaJI	CCNNGG	5 cut(s)	112, 113, 169, 255, 299
Bsc4I	CCNNNNNNNGG	4 cut(s)	160, 286, 305, 326
BseBI	CCWGG	5 cut(s)	102, 114, 256, 301, 327
BseDI	CCNNGG	5 cut(s)	112, 113, 169, 255, 299
BseLI	CCNNNNNNNGG	4 cut(s)	160, 286, 305, 326
BseMII	CTCAG	1 cut(s)	276
BseRI	GAGGAG	1 cut(s)	158
BseSI	GKGCMC	1 cut(s)	321
BseXI	GCAGC	1 cut(s)	17
BsgI	GTGCAG	1 cut(s)	225
BshFI	GGCC	4 cut(s)	97, 105, 304, 330
BsiHKAI	GWGCWC	1 cut(s)	168
BsiSI	CCGG	3 cut(s)	9, 305, 331
BslI	CCNNNNNNNGG	4 cut(s)	160, 286, 305, 326
BsnI	GGCC	4 cut(s)	97, 105, 304, 330
Bsp1286I	GDGCHC	2 cut(s)	168, 321
Bsp143I	GATC	1 cut(s)	86
BspACI	CCGC	2 cut(s)	174, 192
BspANI	GGCC	4 cut(s)	97, 105, 304, 330
BspCNI	CTCAG	1 cut(s)	277
BspPI	GGATC	1 cut(s)	94
BssECI	CCNNGG	5 cut(s)	112, 113, 169, 255, 299
BssMI	GATC	1 cut(s)	86
BssSI	CACGAG	1 cut(s)	243
Bst2BI	CACGAG	1 cut(s)	243
Bst2UI	CCWGG	5 cut(s)	102, 114, 256, 301, 327
Bst4CI	ACNGT	1 cut(s)	316
Bst6I	CTCTTC	1 cut(s)	12
BstDEI	CTNAG	1 cut(s)	285
BstH2I	RGCGCY	1 cut(s)	354
BstHHI	GCGC	3 cut(s)	138, 191, 353
BstKTI	GATC	1 cut(s)	89
BstMBI	GATC	1 cut(s)	86
BstMWI	GCNNNNNNNGC	1 cut(s)	281
BstNI	CCWGG	5 cut(s)	102, 114, 256, 301, 327
BstSCI	CCNGG	7 cut(s)	8, 100, 112, 254, 299, 304, 325
BstSLI	GKGCMC	1 cut(s)	321
BstV1I	GCAGC	1 cut(s)	17
BstXI	CCANNNNNNTGG	1 cut(s)	113
BsuRI	GGCC	4 cut(s)	97, 105, 304, 330
BtsIMutI	CAGTG	1 cut(s)	321
CfoI	GCGC	3 cut(s)	138, 191, 353
CviAII	CATG	1 cut(s)	220
CviJI	RGCY	9 cut(s)	8, 97, 105, 153, 177, 201, 236, 304, 330
CviKI_1	RGCY	9 cut(s)	8, 97, 105, 153, 177, 201, 236, 304, 330
DdeI	CTNAG	1 cut(s)	285
DpnI	GATC	1 cut(s)	88
DpnII	GATC	1 cut(s)	86
EaeI	YGGCCR	1 cut(s)	103
Eam1104I	CTCTTC	1 cut(s)	12
EarI	CTCTTC	1 cut(s)	12
Eco47III	AGCGCT	1 cut(s)	352
EcoRII	CCWGG	5 cut(s)	100, 112, 254, 299, 325
FaeI	CATG	1 cut(s)	223
FaiI	YATR	3 cut(s)	108, 197, 221
FatI	CATG	1 cut(s)	219
Fnu4HI	GCNGC	3 cut(s)	6, 175, 192
Fsp4HI	GCNGC	3 cut(s)	6, 175, 192
FspBI	CTAG	1 cut(s)	342
GlaI	GCGC	3 cut(s)	137, 190, 352
GluI	GCNGC	3 cut(s)	6, 175, 192
HaeII	RGCGCY	1 cut(s)	354
HaeIII	GGCC	4 cut(s)	97, 105, 304, 330
HapII	CCGG	3 cut(s)	9, 305, 331
HhaI	GCGC	3 cut(s)	138, 191, 353
Hin1II	CATG	1 cut(s)	223
Hin6I	GCGC	3 cut(s)	136, 189, 351
HinP1I	GCGC	3 cut(s)	136, 189, 351
HinfI	GANTC	1 cut(s)	52
HpaII	CCGG	3 cut(s)	9, 305, 331
HphI	GGTGA	3 cut(s)	119, 199, 320
Hpy188III	TCNNGA	1 cut(s)	56
HpyAV	CCTTC	2 cut(s)	152, 328
HpyCH4III	ACNGT	1 cut(s)	316
HpyCH4V	TGCA	1 cut(s)	242
HpyF10VI	GCNNNNNNNGC	1 cut(s)	281
HpyF3I	CTNAG	1 cut(s)	285
Hsp92II	CATG	1 cut(s)	223
HspAI	GCGC	3 cut(s)	136, 189, 351
Kzo9I	GATC	1 cut(s)	86
LmnI	GCTCC	1 cut(s)	171
Lsp1109I	GCAGC	1 cut(s)	17
MaeI	CTAG	1 cut(s)	342
MaeIII	GTNAC	1 cut(s)	308
MalI	GATC	1 cut(s)	88
MboI	GATC	1 cut(s)	86
MboII	GAAGA	2 cut(s)	29, 116
MhlI	GDGCHC	2 cut(s)	168, 321
MlsI	TGGCCA	1 cut(s)	105
MluNI	TGGCCA	1 cut(s)	105
MlyI	GAGTC	1 cut(s)	61
MnlI	CCTC	9 cut(s)	18, 52, 76, 126, 179, 191, 221, 247, 280
Mox20I	TGGCCA	1 cut(s)	105
MscI	TGGCCA	1 cut(s)	105
MslI	CAYNNNNRTG	1 cut(s)	161
Msp20I	TGGCCA	1 cut(s)	105
MspI	CCGG	3 cut(s)	9, 305, 331
MspR9I	CCNGG	7 cut(s)	10, 102, 114, 256, 301, 306, 327
MvaI	CCWGG	5 cut(s)	102, 114, 256, 301, 327
MwoI	GCNNNNNNNGC	1 cut(s)	281
NciI	CCSGG	2 cut(s)	10, 306
NdeII	GATC	1 cut(s)	86
NlaIII	CATG	1 cut(s)	223
NmeAIII	GCCGAG	1 cut(s)	150
NmuCI	GTSAC	1 cut(s)	308
OliI	CACNNNNGTG	1 cut(s)	161
PasI	CCCWGGG	1 cut(s)	113
PkrI	GCNGC	3 cut(s)	7, 176, 193
PleI	GAGTC	1 cut(s)	60
PpsI	GAGTC	1 cut(s)	60
Psp6I	CCWGG	5 cut(s)	100, 112, 254, 299, 325
PspGI	CCWGG	5 cut(s)	100, 112, 254, 299, 325
RseI	CAYNNNNRTG	1 cut(s)	161
SatI	GCNGC	3 cut(s)	6, 175, 192
Sau3AI	GATC	1 cut(s)	86
SchI	GAGTC	1 cut(s)	61
ScrFI	CCNGG	7 cut(s)	10, 102, 114, 256, 301, 306, 327
SduI	GDGCHC	2 cut(s)	168, 321
SetI	ASST	2 cut(s)	103, 144
SmiMI	CAYNNNNRTG	1 cut(s)	161
SpeI	ACTAGT	1 cut(s)	341
SsiI	CCGC	2 cut(s)	174, 192
SspMI	CTAG	1 cut(s)	342
StyD4I	CCNGG	7 cut(s)	8, 100, 112, 254, 299, 304, 325
TaaI	ACNGT	1 cut(s)	316
TauI	GCSGC	2 cut(s)	177, 194
TscAI	CASTG	1 cut(s)	321
TseFI	GTSAC	1 cut(s)	308
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	1 cut(s)	308
TspDTI	ATGAA	2 cut(s)	30, 236
TspRI	CASTG	1 cut(s)	321
XspI	CTAG	1 cut(s)	342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.