RLG00000015702

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0006740
Physical Location & Seq
Forward (+)
811982 .. 813703
1722 bp
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UTR
Exon/CDS
Intron
RLM00000015702

Sequence Viewer

Length: 483 bp
ATGGCAGGACCGGAACAAGCAAAGGCGGGAGGCCCAGCAGAGGCGATGAAGGGTGCAGCGCAGGGGATGCATACTACAGAGGTGCTTCATCAACGGTCGAAAGCACCCGTCTGCCCCATGAGAATGGCTGTTGGTGGCATTGCTATCGTCGTCACTCTCGGTTACTTAACCTTATACTCGAAGAAGAAACCTGAGGCATCTGCTCTTGATGTTGCCAAAGTTGCCACAGGACGATCGGAAGGGAAGCGATCAGAGGTCAGGAGTGCCCCACCTGCAGGCATAACTGCTGCTACTAGGGCTCTCTGGGTCGTCCGCCTCCAGCTCCGATTTGGTCCTCGCCCACAGAATACCACCACCTCCATCACACCCCAAACCCTCGCTCGATTCCTTCACTTTGCAATCTTGTTGGGCTTCGGGTCGAAGTTTTTGTCCCCGGAGCTTGACTCGGAGCTCATGGAGAAACTAATCGGGGGTGACATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

161

Amino Acids

16.95

Weight (kDa)

10.0

Isoelectric Point (pI)

51.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 280
Acc36I ACCTGC 1 cut(s) 280
AciI CCGC 2 cut(s) 26, 313
AfiI CCNNNNNNNGG 2 cut(s) 40, 275
AluBI AGCT 3 cut(s) 322, 439, 451
AluI AGCT 3 cut(s) 322, 439, 451
Alw21I GWGCWC 1 cut(s) 453
AoxI GGCC 1 cut(s) 31
ApeKI GCWGC 2 cut(s) 56, 287
ArsI GACNNNNNNTTYG 2 cut(s) 413, 445
AspLEI GCGC 1 cut(s) 61
AspS9I GGNCC 3 cut(s) 8, 32, 332
AsuC2I CCSGG 1 cut(s) 434
AvaII GGWCC 2 cut(s) 8, 332
AxyI CCTNAGG 1 cut(s) 192
BaeGI GKGCMC 1 cut(s) 268
BanII GRGCYC 2 cut(s) 301, 453
Bbv12I GWGCWC 1 cut(s) 453
BbvI GCAGC 2 cut(s) 68, 274
BccI CCATC 1 cut(s) 368
BcgI CGANNNNNNTGC 2 cut(s) 127, 161
BcnI CCSGG 1 cut(s) 434
BfaI CTAG 1 cut(s) 294
BfmI CTRYAG 2 cut(s) 75, 273
BfuAI ACCTGC 1 cut(s) 280
BisI GCNGC 2 cut(s) 57, 288
BlsI GCNGC 2 cut(s) 58, 289
Bme1390I CCNGG 1 cut(s) 434
Bme18I GGWCC 2 cut(s) 8, 332
BmgT120I GGNCC 3 cut(s) 8, 32, 332
BmrFI CCNGG 1 cut(s) 434
BmsI GCATC 2 cut(s) 57, 206
BplI GAGNNNNNCTC 2 cut(s) 428, 460
BpmI CTGGAG 1 cut(s) 302
BpuMI CCSGG 1 cut(s) 434
BsaJI CCNNGG 1 cut(s) 432
BsaWI WCCGGW 1 cut(s) 10
Bsc4I CCNNNNNNNGG 2 cut(s) 40, 275
Bse21I CCTNAGG 1 cut(s) 192
Bse3DI GCAATG 1 cut(s) 138
BseDI CCNNGG 1 cut(s) 432
BseGI GGATG 1 cut(s) 72
BseLI CCNNNNNNNGG 2 cut(s) 40, 275
BseMI GCAATG 1 cut(s) 138
BseMII CTCAG 1 cut(s) 183
BseSI GKGCMC 1 cut(s) 268
BseXI GCAGC 2 cut(s) 68, 274
BseYI CCCAGC 1 cut(s) 34
BsgI GTGCAG 1 cut(s) 75
Bsh1285I CGRYCG 2 cut(s) 98, 236
BshFI GGCC 1 cut(s) 33
BsiEI CGRYCG 2 cut(s) 98, 236
BsiHKAI GWGCWC 1 cut(s) 453
BsiSI CCGG 2 cut(s) 11, 434
BslFI GGGAC 1 cut(s) 415
BslI CCNNNNNNNGG 2 cut(s) 40, 275
BsmFI GGGAC 1 cut(s) 415
BsnI GGCC 1 cut(s) 33
Bsp1286I GDGCHC 3 cut(s) 268, 301, 453
Bsp143I GATC 2 cut(s) 233, 248
BspACI CCGC 2 cut(s) 26, 313
BspANI GGCC 1 cut(s) 33
BspCNI CTCAG 1 cut(s) 184
BspMAI CTGCAG 1 cut(s) 277
BspMI ACCTGC 1 cut(s) 280
BsrDI GCAATG 1 cut(s) 138
BssECI CCNNGG 1 cut(s) 432
BssMI GATC 2 cut(s) 233, 248
Bst4CI ACNGT 1 cut(s) 96
BstAPI GCANNNNNTGC 1 cut(s) 67
BstC8I GCNNGC 1 cut(s) 277
BstDEI CTNAG 1 cut(s) 192
BstF5I GGATG 1 cut(s) 72
BstHHI GCGC 1 cut(s) 61
BstKTI GATC 2 cut(s) 236, 251
BstMBI GATC 2 cut(s) 233, 248
BstMCI CGRYCG 2 cut(s) 98, 236
BstMWI GCNNNNNNNGC 4 cut(s) 67, 221, 272, 296
BstSCI CCNGG 1 cut(s) 432
BstSFI CTRYAG 2 cut(s) 75, 273
BstSLI GKGCMC 1 cut(s) 268
BstV1I GCAGC 2 cut(s) 68, 274
BstXI CCANNNNNNTGG 1 cut(s) 124
Bsu36I CCTNAGG 1 cut(s) 192
BsuRI GGCC 1 cut(s) 33
BtgZI GCGATG 1 cut(s) 59
BtsCI GGATG 1 cut(s) 72
BveI ACCTGC 1 cut(s) 280
Cac8I GCNNGC 1 cut(s) 277
CfoI GCGC 1 cut(s) 61
Cfr13I GGNCC 3 cut(s) 8, 32, 332
CviAII CATG 2 cut(s) 118, 454
CviJI RGCY 7 cut(s) 33, 128, 299, 322, 411, 439, 451
CviKI_1 RGCY 7 cut(s) 33, 128, 299, 322, 411, 439, 451
DdeI CTNAG 1 cut(s) 192
DpnI GATC 2 cut(s) 235, 250
DpnII GATC 2 cut(s) 233, 248
EciI GGCGGA 1 cut(s) 302
Ecl136II GAGCTC 1 cut(s) 451
Eco24I GRGCYC 2 cut(s) 301, 453
Eco47I GGWCC 2 cut(s) 8, 332
Eco53kI GAGCTC 1 cut(s) 451
Eco81I CCTNAGG 1 cut(s) 192
EcoICRI GAGCTC 1 cut(s) 451
EcoT22I ATGCAT 1 cut(s) 72
EcoT38I GRGCYC 2 cut(s) 301, 453
FaeI CATG 2 cut(s) 121, 457
FaiI YATR 5 cut(s) 72, 119, 175, 281, 455
FaqI GGGAC 1 cut(s) 415
FatI CATG 2 cut(s) 117, 453
FauI CCCGC 1 cut(s) 19
Fnu4HI GCNGC 2 cut(s) 57, 288
FokI GGATG 1 cut(s) 79
FriOI GRGCYC 2 cut(s) 301, 453
Fsp4HI GCNGC 2 cut(s) 57, 288
FspBI CTAG 1 cut(s) 294
GlaI GCGC 1 cut(s) 60
GluI GCNGC 2 cut(s) 57, 288
GsaI CCCAGC 1 cut(s) 38
GsuI CTGGAG 1 cut(s) 302
HaeIII GGCC 1 cut(s) 33
HapII CCGG 2 cut(s) 11, 434
HhaI GCGC 1 cut(s) 61
Hin1II CATG 2 cut(s) 121, 457
Hin6I GCGC 1 cut(s) 59
HinP1I GCGC 1 cut(s) 59
HinfI GANTC 2 cut(s) 384, 443
HpaII CCGG 2 cut(s) 11, 434
Hpy188I TCNGA 4 cut(s) 238, 253, 326, 448
Hpy188III TCNNGA 2 cut(s) 206, 259
Hpy99I CGWCG 1 cut(s) 152
HpyAV CCTTC 3 cut(s) 43, 233, 398
HpyCH4III ACNGT 1 cut(s) 96
HpyCH4V TGCA 4 cut(s) 56, 70, 275, 398
HpyF10VI GCNNNNNNNGC 4 cut(s) 67, 221, 272, 296
HpyF3I CTNAG 1 cut(s) 192
Hsp92II CATG 2 cut(s) 121, 457
HspAI GCGC 1 cut(s) 59
Kzo9I GATC 2 cut(s) 233, 248
LmnI GCTCC 3 cut(s) 327, 436, 448
Lsp1109I GCAGC 2 cut(s) 68, 274
LweI GCATC 2 cut(s) 57, 206
MaeI CTAG 1 cut(s) 294
MaeIII GTNAC 3 cut(s) 151, 161, 473
MalI GATC 2 cut(s) 235, 250
MboI GATC 2 cut(s) 233, 248
MboII GAAGA 2 cut(s) 193, 196
MhlI GDGCHC 3 cut(s) 268, 301, 453
MlyI GAGTC 1 cut(s) 437
MnlI CCTC 9 cut(s) 23, 34, 73, 187, 247, 326, 345, 367, 386
Mph1103I ATGCAT 1 cut(s) 72
MseI TTAA 1 cut(s) 167
MslI CAYNNNNRTG 1 cut(s) 122
MspI CCGG 2 cut(s) 11, 434
MspR9I CCNGG 1 cut(s) 434
MwoI GCNNNNNNNGC 4 cut(s) 67, 221, 272, 296
NciI CCSGG 1 cut(s) 434
NdeII GATC 2 cut(s) 233, 248
NlaIII CATG 2 cut(s) 121, 457
NmuCI GTSAC 2 cut(s) 151, 473
NsiI ATGCAT 1 cut(s) 72
PaqCI CACCTGC 1 cut(s) 280
PfeI GAWTC 1 cut(s) 384
PkrI GCNGC 2 cut(s) 58, 289
Ple19I CGATCG 1 cut(s) 236
PleI GAGTC 1 cut(s) 437
PpsI GAGTC 1 cut(s) 437
Psp124BI GAGCTC 1 cut(s) 453
PspFI CCCAGC 1 cut(s) 34
PspPI GGNCC 3 cut(s) 8, 32, 332
PstI CTGCAG 1 cut(s) 277
PvuI CGATCG 1 cut(s) 236
RseI CAYNNNNRTG 1 cut(s) 122
SacI GAGCTC 1 cut(s) 453
SaqAI TTAA 1 cut(s) 167
SatI GCNGC 2 cut(s) 57, 288
Sau3AI GATC 2 cut(s) 233, 248
Sau96I GGNCC 3 cut(s) 8, 32, 332
SbfI CCTGCAGG 1 cut(s) 277
SchI GAGTC 1 cut(s) 437
ScrFI CCNGG 1 cut(s) 434
SdaI CCTGCAGG 1 cut(s) 277
SduI GDGCHC 3 cut(s) 268, 301, 453
SetI ASST 9 cut(s) 84, 173, 193, 258, 274, 324, 359, 441, 453
SfaNI GCATC 2 cut(s) 57, 206
SfcI CTRYAG 2 cut(s) 75, 273
SinI GGWCC 2 cut(s) 8, 332
SmiMI CAYNNNNRTG 1 cut(s) 122
Sse8387I CCTGCAGG 1 cut(s) 277
SsiI CCGC 2 cut(s) 26, 313
SspMI CTAG 1 cut(s) 294
SstI GAGCTC 1 cut(s) 453
StyD4I CCNGG 1 cut(s) 432
TaaI ACNGT 1 cut(s) 96
TaqI TCGA 4 cut(s) 98, 179, 382, 419
TfiI GAWTC 1 cut(s) 384
Tru1I TTAA 1 cut(s) 167
Tru9I TTAA 1 cut(s) 167
TseFI GTSAC 2 cut(s) 151, 473
TseI GCWGC 2 cut(s) 56, 287
Tsp45I GTSAC 2 cut(s) 151, 473
TspDTI ATGAA 2 cut(s) 62, 77
VpaK11BI GGWCC 2 cut(s) 8, 332
XcmI CCANNNNNNNNNTGG 1 cut(s) 326
XspI CTAG 1 cut(s) 294
Zsp2I ATGCAT 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.