Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0006740

Physical Location & Seq

Genomic Coordinates Reverse (-)

2872248 .. 2872550

Gene Structure 303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1040800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGGCGGGGGATGAAGATTGGAGGAAAACGGCAGAGACGACGAAAATGAGTCCGGAGGAAGTGAAGAGAGCTGGACTGGAGGGAGCACAGAGGCCTCCCGGTCATAACCCCGGCGGTGTTCTTCACCAGCGACGCGGTCTCCCCCTTGGCCCTATAATCATGGCAGTTACCGGCTTCCTCATTGTCGGCACCATCGGCTACTTCTCCCTGTACACCCTTAAAAAGCCCGAAGCCACCGCCGGAGATGTTGCCAAGGTCTCCGCCAATGTTGCCACCCCCGAGGACACTCGCCCAAGGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

101

Amino Acids

10.71

Weight (kDa)

9.45

Isoelectric Point (pI)

44.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31830
malus_domestica	MD08G1056200.v1.1 MD15G1040800.v1.1 MD15G1144300.v1.1
prunus_persica	Prupe.1G394000_v2.0.a1 Prupe.7G263500_v2.0.a1
pyrus_communis	pycom02g00590
rosa_chinensis	RchiOBHm_Chr6g0299391
rosa_laevigata	RLG00000011436 RLG00000015702
rosa_multiflora	Rmu_sc0013965.1_g000003 Rmu_sc0017526.1_g000003 Rmu_ssc0000347.1_g000006
rosa_roxburghii	Rroxscaffold_7G00168730
rosa_rugosa	Rorug01G0461500 Rorug06G0287900
rosa_samantha	Rh2AG010400 Rh2BG011000 Rh2CG011900 Rh2DG012900 Rh6AG399400 Rh6BG408000 Rh6CG413800 Rh6DG400600
rosa_wichuraiana	Rw2G000930 Rw6G034970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	188
AccII	CGCG	1 cut(s)	135
AccIII	TCCGGA	1 cut(s)	52
AciI	CCGC	5 cut(s)	5, 114, 135, 237, 261
AfaI	GTAC	1 cut(s)	212
AluBI	AGCT	1 cut(s)	71
AluI	AGCT	1 cut(s)	71
Alw21I	GWGCWC	1 cut(s)	88
Alw26I	GTCTC	3 cut(s)	29, 143, 262
Ama87I	CYCGRG	1 cut(s)	278
Aor13HI	TCCGGA	1 cut(s)	52
AoxI	GGCC	2 cut(s)	92, 148
AspS9I	GGNCC	1 cut(s)	149
AsuC2I	CCSGG	2 cut(s)	99, 111
AsuHPI	GGTGA	1 cut(s)	116
AvaI	CYCGRG	1 cut(s)	278
BanI	GGYRCC	1 cut(s)	188
Bbv12I	GWGCWC	1 cut(s)	88
BccI	CCATC	1 cut(s)	200
BceAI	ACGGC	1 cut(s)	45
BcnI	CCSGG	2 cut(s)	99, 111
BcoDI	GTCTC	3 cut(s)	29, 143, 262
Bme1390I	CCNGG	2 cut(s)	99, 111
BmeT110I	CYCGRG	1 cut(s)	278
BmgT120I	GGNCC	1 cut(s)	149
BmiI	GGNNCC	1 cut(s)	190
BmrFI	CCNGG	2 cut(s)	99, 111
BpmI	CTGGAG	1 cut(s)	98
BpuMI	CCSGG	2 cut(s)	99, 111
BsaI	GGTCTC	2 cut(s)	143, 262
BsaJI	CCNNGG	5 cut(s)	109, 145, 252, 279, 293
BsaWI	WCCGGW	1 cut(s)	52
BsaXI	ACNNNNNCTCC	2 cut(s)	123, 153
Bse118I	RCCGGY	1 cut(s)	170
Bse1I	ACTGG	1 cut(s)	81
BseAI	TCCGGA	1 cut(s)	52
BseDI	CCNNGG	5 cut(s)	109, 145, 252, 279, 293
BseGI	GGATG	1 cut(s)	16
BseNI	ACTGG	1 cut(s)	81
Bsh1236I	CGCG	1 cut(s)	135
BshFI	GGCC	2 cut(s)	94, 150
BshNI	GGYRCC	1 cut(s)	188
BsiHKAI	GWGCWC	1 cut(s)	88
BsiHKCI	CYCGRG	1 cut(s)	278
BsiSI	CCGG	5 cut(s)	53, 99, 111, 171, 240
BsmAI	GTCTC	3 cut(s)	29, 143, 262
BsmBI	CGTCTC	1 cut(s)	29
BsnI	GGCC	2 cut(s)	94, 150
Bso31I	GGTCTC	2 cut(s)	143, 262
BsoBI	CYCGRG	1 cut(s)	278
Bsp1286I	GDGCHC	1 cut(s)	88
Bsp13I	TCCGGA	1 cut(s)	52
Bsp1407I	TGTACA	1 cut(s)	210
BspACI	CCGC	5 cut(s)	5, 114, 135, 237, 261
BspANI	GGCC	2 cut(s)	94, 150
BspEI	TCCGGA	1 cut(s)	52
BspFNI	CGCG	1 cut(s)	135
BspLI	GGNNCC	1 cut(s)	190
BspT107I	GGYRCC	1 cut(s)	188
BspTNI	GGTCTC	2 cut(s)	143, 262
BsrFI	RCCGGY	1 cut(s)	170
BsrGI	TGTACA	1 cut(s)	210
BsrI	ACTGG	1 cut(s)	81
BssAI	RCCGGY	1 cut(s)	170
BssECI	CCNNGG	5 cut(s)	109, 145, 252, 279, 293
BssT1I	CCWWGG	3 cut(s)	145, 252, 293
Bst6I	CTCTTC	1 cut(s)	59
BstAUI	TGTACA	1 cut(s)	210
BstF5I	GGATG	1 cut(s)	16
BstFNI	CGCG	1 cut(s)	135
BstMAI	GTCTC	3 cut(s)	29, 143, 262
BstMWI	GCNNNNNNNGC	2 cut(s)	195, 269
BstSCI	CCNGG	2 cut(s)	97, 109
BstUI	CGCG	1 cut(s)	135
BsuRI	GGCC	2 cut(s)	94, 150
BtsCI	GGATG	1 cut(s)	16
Cfr10I	RCCGGY	1 cut(s)	170
Cfr13I	GGNCC	1 cut(s)	149
CseI	GACGC	1 cut(s)	141
Csp6I	GTAC	1 cut(s)	211
CviAII	CATG	1 cut(s)	160
CviJI	RGCY	7 cut(s)	71, 94, 150, 174, 198, 226, 233
CviKI_1	RGCY	7 cut(s)	71, 94, 150, 174, 198, 226, 233
CviQI	GTAC	1 cut(s)	211
Eam1104I	CTCTTC	1 cut(s)	59
EarI	CTCTTC	1 cut(s)	59
EciI	GGCGGA	1 cut(s)	250
Eco130I	CCWWGG	3 cut(s)	145, 252, 293
Eco147I	AGGCCT	1 cut(s)	94
Eco31I	GGTCTC	2 cut(s)	143, 262
Eco88I	CYCGRG	1 cut(s)	278
EcoT14I	CCWWGG	3 cut(s)	145, 252, 293
ErhI	CCWWGG	3 cut(s)	145, 252, 293
Esp3I	CGTCTC	1 cut(s)	29
FaeI	CATG	1 cut(s)	163
FaiI	YATR	3 cut(s)	105, 155, 161
FatI	CATG	1 cut(s)	159
FokI	GGATG	1 cut(s)	23
GsuI	CTGGAG	1 cut(s)	98
HaeIII	GGCC	2 cut(s)	94, 150
HapII	CCGG	5 cut(s)	53, 99, 111, 171, 240
HgaI	GACGC	1 cut(s)	141
Hin1II	CATG	1 cut(s)	163
HinfI	GANTC	1 cut(s)	49
HpaII	CCGG	5 cut(s)	53, 99, 111, 171, 240
HphI	GGTGA	1 cut(s)	116
Hpy166II	GTNNAC	1 cut(s)	213
Hpy188III	TCNNGA	1 cut(s)	53
Hpy8I	GTNNAC	1 cut(s)	213
Hpy99I	CGWCG	2 cut(s)	43, 135
HpyF10VI	GCNNNNNNNGC	2 cut(s)	195, 269
Hsp92II	CATG	1 cut(s)	163
Kpn2I	TCCGGA	1 cut(s)	52
LmnI	GCTCC	1 cut(s)	83
LpnPI	CCDG	9 cut(s)	57, 62, 66, 112, 124, 140, 184, 221, 253
MaeIII	GTNAC	1 cut(s)	166
MboII	GAAGA	3 cut(s)	26, 76, 113
MhlI	GDGCHC	1 cut(s)	88
MlyI	GAGTC	1 cut(s)	58
MnlI	CCTC	7 cut(s)	15, 49, 73, 84, 105, 188, 274
MroI	TCCGGA	1 cut(s)	52
MseI	TTAA	1 cut(s)	219
MspI	CCGG	5 cut(s)	53, 99, 111, 171, 240
MspR9I	CCNGG	2 cut(s)	99, 111
MvnI	CGCG	1 cut(s)	135
MwoI	GCNNNNNNNGC	2 cut(s)	195, 269
NciI	CCSGG	2 cut(s)	99, 111
NlaIII	CATG	1 cut(s)	163
NlaIV	GGNNCC	1 cut(s)	190
PceI	AGGCCT	1 cut(s)	94
PcsI	WCGNNNNNNNCGW	1 cut(s)	35
PflFI	GACNNNGTC	1 cut(s)	135
PleI	GAGTC	1 cut(s)	57
PpsI	GAGTC	1 cut(s)	57
PspN4I	GGNNCC	1 cut(s)	190
PspPI	GGNCC	1 cut(s)	149
PsyI	GACNNNGTC	1 cut(s)	135
RsaI	GTAC	1 cut(s)	212
RsaNI	GTAC	1 cut(s)	211
SaqAI	TTAA	1 cut(s)	219
Sau96I	GGNCC	1 cut(s)	149
SchI	GAGTC	1 cut(s)	58
ScrFI	CCNGG	2 cut(s)	99, 111
SduI	GDGCHC	1 cut(s)	88
SetI	ASST	2 cut(s)	73, 258
SseBI	AGGCCT	1 cut(s)	94
SsiI	CCGC	5 cut(s)	5, 114, 135, 237, 261
StuI	AGGCCT	1 cut(s)	94
StyD4I	CCNGG	2 cut(s)	97, 109
StyI	CCWWGG	3 cut(s)	145, 252, 293
TatI	WGTACW	1 cut(s)	210
Tru1I	TTAA	1 cut(s)	219
Tru9I	TTAA	1 cut(s)	219
TspDTI	ATGAA	1 cut(s)	27
Tth111I	GACNNNGTC	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.