Rorug06G0287900

No description available

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
43768908 .. 43771397
2490 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0287900.1

Sequence Viewer

Length: 1842 bp
ATGGCCGGCGAACGAATCAAGTTGCAAATCTGGGACACAGCCGGTCAGGAACGGTTCAAAACAATCACAAGAGGGATTGGGGAGGAAAAGCACCCTCCTTCTGTAAATGTCAAGAAGATACTGGTGGGAAACAAGGCTGACATCGGTGAGAGCAAAAGGGCAGTGACGAAATCTAGAGGTCAGGCTCTTGCTGATGAGTTCGGCCTCAAGTTCTTCGAAACCATTGCAAAGACGAACATAAATGTGGAAGGGGTTTTCCTTGCGTTAGCCAGGGATATCAGGCCAGAATTGAACGCTTCTAGGAGCATTCACGAGCGTCCGAGAGAAATAAGACAGGGAGACCCTCTCATTCATGAGTCAAAACCATCGTTATCTCACCTCATATATTCTGCTATTGAGGTAGGCCAATGGAACCCAGTTAGAGCCTCTCAATCTGGACCCAAGATCTCGCATCTCTTTTTTGCTGATGATTTACTTCTTTTTGCTAAGGCTTCTTGTCAACAAGCTACTGTCTTAAGGAAATGTCTTGACATCTTTTGCTCTTTATCGGGCCAATCTGTAAACTTCGAAAAGTCTCTTGTTTTCTGTTCTCCTAACACCGACAAGAATCTTGCTAATGATATCAGCTCCCTCTGTGGTTCTCCCCTTACTGATGACCTAAATTATAAAACCCCTGCTGGAAGTTCTAGCACTTGGAGAGGTGTGGTTCATGGATCAGATTTACTCCGTAATGGCATTGTCTGGAGGGTTGGAGATGGAAGAACTATAAAATTCTGGACCGACGTATGGATTGGTAAGCTTCCACTTTTTAATGTAGCCCTGCCTAATGCTCATATTGATATGAATGCTCTTGTTTGCTCATTTTGGGATAACAATGGCTGGAATATGAATTTACTATCTCTATGCTTACCTCAAGACATTATTCATGAAATTTGTTGTGTTCCCCCTGGCTTTGATGGTTGCGGAGCTGATATGAAAATTTGGGGTTACACTACTAATGGATGTTTTACTGTGAAATTAGCCTATAGTAGTGTTTTTAACCCTATGGAACATAATCGATTCCAATGGAAATTCATTTGGGGAATGAACATTCCCCCCAAATTAAAAACCTTTTTATGGACTATTGTTCATGGTAGACTTCTTACAAATGTCCAGAGAATTAGAAGAGGGTTTACTGAAAATGGTAAGTGTCATGCTTGTACAAGGAGCCAAGAAACTCTTCTGCATCTATTTAGGGACTGCCTTAAAGCTATCACCATATGGGAGTCTCTCAATTGGCCTACCACTATCAAAAATGCTTTTCAATTGGATTGGTTTGGATGGCTTGCTGCAAATCTTCATTGCCTTATCTTCTACACTGAGAATTTAAGATGGTGCAATATCTTTGTTTTCACTTGTTGGTACTTATGGAAGTGGAGAAATAAGCTGCCTACCAATGCTACTCAACTGATCGTTAATGCTGCAAATGAATGGATGAATGCTCAAGCTCAACTCTCCAGGTTAGATAGTTATTGTCTTAATATCCTTTCTTGGTTGAAACCTCCAATTGGATTTATGAAACTTAATGTGGATGGCACCAGATCCAATCAATCTAGGTTTATTGGAGCTGGTGGGGTAATTAGAGATCACAATGGAGATTGGTTATCTGGTTTCAGCATAAACTTGGGGGTTGGCCAAATCATCAATGCTGAAGCTAGGGGGATGCTTTCTGGATTGAAACTTGCTTCTGACTTGAATATCAGAAAGCTTGAAGTAGAATCTGACTCAGCTATCTTTGTTAAGTTGCTGATTGATGGTTGTCCTATATCTCATCCTTTAGGCAACATTATTGTAGACATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

613

Amino Acids

69.01

Weight (kDa)

8.88

Isoelectric Point (pI)

36.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ras PF00071 35 - 94 1.6e-12 Ras family
zf-RVT PF13966 336 - 421 3.4e-18 zinc-binding in reverse transcriptase
RVT_3 PF13456 522 - 613 9.9e-14 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 666
AccB1I GGYRCC 1 cut(s) 1574
AccI GTMKAC 2 cut(s) 1135, 1833
AciI CCGC 1 cut(s) 963
AclWI GGATC 2 cut(s) 721, 1575
AcoI YGGCCR 2 cut(s) 3, 1672
AcsI RAATTY 6 cut(s) 770, 889, 930, 978, 1070, 1363
AcuI CTGAAG 1 cut(s) 1710
AfaI GTAC 2 cut(s) 1201, 1403
AfiI CCNNNNNNNGG 3 cut(s) 786, 1116, 1547
AflII CTTAAG 1 cut(s) 514
AgsI TTSAA 7 cut(s) 58, 292, 1304, 1537, 1717, 1735, 1751
AjnI CCWGG 3 cut(s) 269, 946, 1496
AjuI GAANNNNNNNTTGG 2 cut(s) 1203, 1235
Alw26I GTCTC 3 cut(s) 333, 579, 1272
AlwI GGATC 2 cut(s) 721, 1575
AoxI GGCC 7 cut(s) 3, 202, 281, 403, 550, 1277, 1672
ApeKI GCWGC 3 cut(s) 1328, 1426, 1460
ApoI RAATTY 6 cut(s) 770, 889, 930, 978, 1070, 1363
Asp700I GAANNNNTTC 1 cut(s) 1218
AspS9I GGNCC 3 cut(s) 437, 550, 777
AsuHPI GGTGA 3 cut(s) 158, 368, 1246
AsuII TTCGAA 2 cut(s) 216, 567
AvaII GGWCC 2 cut(s) 437, 777
BalI TGGCCA 1 cut(s) 1674
BanI GGYRCC 1 cut(s) 1574
BarI GAAGNNNNNNTAC 2 cut(s) 1156, 1188
BauI CACGAG 1 cut(s) 311
BbvI GCAGC 3 cut(s) 1315, 1413, 1447
BccI CCATC 7 cut(s) 373, 749, 950, 1314, 1365, 1565, 1787
BcgI CGANNNNNNTGC 2 cut(s) 206, 240
BciT130I CCWGG 3 cut(s) 271, 948, 1498
BcoDI GTCTC 3 cut(s) 333, 579, 1272
BfaI CTAG 5 cut(s) 174, 300, 687, 1593, 1695
BfmI CTRYAG 1 cut(s) 1024
BfrI CTTAAG 1 cut(s) 514
BglII AGATCT 1 cut(s) 444
BisI GCNGC 3 cut(s) 1329, 1427, 1461
BlsI GCNGC 3 cut(s) 1330, 1428, 1462
Bme1390I CCNGG 3 cut(s) 271, 948, 1498
Bme18I GGWCC 2 cut(s) 437, 777
BmgT120I GGNCC 3 cut(s) 437, 550, 777
BmiI GGNNCC 4 cut(s) 413, 439, 1208, 1576
BmrFI CCNGG 3 cut(s) 271, 948, 1498
BmrI ACTGGG 1 cut(s) 410
BmsI GCATC 3 cut(s) 460, 1234, 1692
BmuI ACTGGG 1 cut(s) 410
BplI GAGNNNNNCTC 2 cut(s) 330, 362
BpmI CTGGAG 2 cut(s) 763, 1480
Bpu10I CCTNAGC 1 cut(s) 486
Bpu14I TTCGAA 2 cut(s) 216, 567
BpuEI CTTGAG 3 cut(s) 191, 897, 1467
Bsa29I ATCGAT 1 cut(s) 1057
BsaI GGTCTC 1 cut(s) 333
BsaJI CCNNGG 2 cut(s) 270, 946
Bsc4I CCNNNNNNNGG 3 cut(s) 786, 1116, 1547
Bse118I RCCGGY 2 cut(s) 5, 41
Bse1I ACTGG 2 cut(s) 126, 416
Bse3DI GCAATG 2 cut(s) 222, 1339
BseBI CCWGG 3 cut(s) 271, 948, 1498
BseCI ATCGAT 1 cut(s) 1057
BseDI CCNNGG 2 cut(s) 270, 946
BseGI GGATG 6 cut(s) 1007, 1325, 1479, 1576, 1707, 1810
BseLI CCNNNNNNNGG 3 cut(s) 786, 1116, 1547
BseMI GCAATG 2 cut(s) 222, 1339
BseMII CTCAG 2 cut(s) 1350, 1779
BseNI ACTGG 2 cut(s) 126, 416
BseXI GCAGC 3 cut(s) 1315, 1413, 1447
BshFI GGCC 7 cut(s) 5, 204, 283, 405, 552, 1279, 1674
BshNI GGYRCC 1 cut(s) 1574
BshVI ATCGAT 1 cut(s) 1057
BsiSI CCGG 2 cut(s) 6, 42
BslFI GGGAC 2 cut(s) 47, 1250
BslI CCNNNNNNNGG 3 cut(s) 786, 1116, 1547
BsmAI GTCTC 3 cut(s) 333, 579, 1272
BsmFI GGGAC 2 cut(s) 47, 1250
BsmI GAATGC 3 cut(s) 306, 850, 1483
BsnI GGCC 7 cut(s) 5, 204, 283, 405, 552, 1279, 1674
Bso31I GGTCTC 1 cut(s) 333
Bsp119I TTCGAA 2 cut(s) 216, 567
Bsp1407I TGTACA 1 cut(s) 1199
Bsp143I GATC 5 cut(s) 444, 713, 1449, 1580, 1624
BspACI CCGC 1 cut(s) 963
BspANI GGCC 7 cut(s) 5, 204, 283, 405, 552, 1279, 1674
BspCNI CTCAG 2 cut(s) 1351, 1778
BspDI ATCGAT 1 cut(s) 1057
BspHI TCATGA 2 cut(s) 352, 925
BspLI GGNNCC 4 cut(s) 413, 439, 1208, 1576
BspPI GGATC 2 cut(s) 721, 1575
BspT104I TTCGAA 2 cut(s) 216, 567
BspT107I GGYRCC 1 cut(s) 1574
BspTI CTTAAG 1 cut(s) 514
BspTNI GGTCTC 1 cut(s) 333
BsrDI GCAATG 2 cut(s) 222, 1339
BsrFI RCCGGY 2 cut(s) 5, 41
BsrGI TGTACA 1 cut(s) 1199
BsrI ACTGG 2 cut(s) 126, 416
BssAI RCCGGY 2 cut(s) 5, 41
BssECI CCNNGG 2 cut(s) 270, 946
BssMI GATC 5 cut(s) 444, 713, 1449, 1580, 1624
BssSI CACGAG 1 cut(s) 311
Bst2BI CACGAG 1 cut(s) 311
Bst2UI CCWGG 3 cut(s) 271, 948, 1498
Bst4CI ACNGT 3 cut(s) 54, 511, 1012
Bst6I CTCTTC 2 cut(s) 1159, 1224
BstAFI CTTAAG 1 cut(s) 514
BstAUI TGTACA 1 cut(s) 1199
BstBI TTCGAA 2 cut(s) 216, 567
BstC8I GCNNGC 2 cut(s) 7, 1326
BstDEI CTNAG 3 cut(s) 486, 1359, 1765
BstF5I GGATG 6 cut(s) 1007, 1325, 1479, 1576, 1707, 1810
BstKTI GATC 5 cut(s) 447, 716, 1452, 1583, 1627
BstMAI GTCTC 3 cut(s) 333, 579, 1272
BstMBI GATC 5 cut(s) 444, 713, 1449, 1580, 1624
BstNI CCWGG 3 cut(s) 271, 948, 1498
BstSCI CCNGG 3 cut(s) 269, 946, 1496
BstSFI CTRYAG 1 cut(s) 1024
BstV1I GCAGC 3 cut(s) 1315, 1413, 1447
BstX2I RGATCY 2 cut(s) 444, 1580
BstYI RGATCY 2 cut(s) 444, 1580
Bsu15I ATCGAT 1 cut(s) 1057
BsuRI GGCC 7 cut(s) 5, 204, 283, 405, 552, 1279, 1674
BsuTUI ATCGAT 1 cut(s) 1057
BtsCI GGATG 6 cut(s) 1007, 1325, 1479, 1576, 1707, 1810
BtsI GCAGTG 1 cut(s) 168
BtsIMutI CAGTG 2 cut(s) 168, 1356
Cac8I GCNNGC 2 cut(s) 7, 1326
CciI TCATGA 2 cut(s) 352, 925
Cfr10I RCCGGY 2 cut(s) 5, 41
Cfr13I GGNCC 3 cut(s) 437, 550, 777
ClaI ATCGAT 1 cut(s) 1057
CseI GACGC 1 cut(s) 305
Csp6I GTAC 2 cut(s) 1200, 1402
CviAII CATG 5 cut(s) 353, 710, 926, 1130, 1193
CviQI GTAC 2 cut(s) 1200, 1402
DdeI CTNAG 3 cut(s) 486, 1359, 1765
DpnI GATC 5 cut(s) 446, 715, 1451, 1582, 1626
DpnII GATC 5 cut(s) 444, 713, 1449, 1580, 1624
EaeI YGGCCR 2 cut(s) 3, 1672
Eam1104I CTCTTC 2 cut(s) 1159, 1224
EarI CTCTTC 2 cut(s) 1159, 1224
Eco31I GGTCTC 1 cut(s) 333
Eco32I GATATC 2 cut(s) 277, 622
Eco47I GGWCC 2 cut(s) 437, 777
Eco57I CTGAAG 1 cut(s) 1710
EcoRII CCWGG 3 cut(s) 269, 946, 1496
EcoRV GATATC 2 cut(s) 277, 622
FaeI CATG 5 cut(s) 356, 713, 929, 1133, 1196
FalI AAGNNNNNCTT 2 cut(s) 1203, 1235
FaqI GGGAC 2 cut(s) 47, 1250
FatI CATG 5 cut(s) 352, 709, 925, 1129, 1192
FauNDI CATATG 1 cut(s) 1259
FblI GTMKAC 2 cut(s) 1135, 1833
Fnu4HI GCNGC 3 cut(s) 1329, 1427, 1461
FokI GGATG 6 cut(s) 1014, 1332, 1486, 1583, 1714, 1797
Fsp4HI GCNGC 3 cut(s) 1329, 1427, 1461
FspBI CTAG 5 cut(s) 174, 300, 687, 1593, 1695
GluI GCNGC 3 cut(s) 1329, 1427, 1461
GsuI CTGGAG 2 cut(s) 763, 1480
HaeIII GGCC 7 cut(s) 5, 204, 283, 405, 552, 1279, 1674
HapII CCGG 2 cut(s) 6, 42
HgaI GACGC 1 cut(s) 305
Hin1II CATG 5 cut(s) 356, 713, 929, 1133, 1196
HincII GTYRAC 1 cut(s) 500
HindII GTYRAC 1 cut(s) 500
HindIII AAGCTT 2 cut(s) 797, 1745
HinfI GANTC 7 cut(s) 15, 356, 607, 1059, 1265, 1757, 1763
HpaII CCGG 2 cut(s) 6, 42
HphI GGTGA 3 cut(s) 158, 368, 1246
Hpy166II GTNNAC 5 cut(s) 500, 562, 1136, 1173, 1834
Hpy188I TCNGA 5 cut(s) 321, 718, 1729, 1742, 1762
Hpy8I GTNNAC 5 cut(s) 500, 562, 1136, 1173, 1834
Hpy99I CGWCG 1 cut(s) 785
HpyAV CCTTC 2 cut(s) 108, 242
HpyCH4III ACNGT 3 cut(s) 54, 511, 1012
HpyCH4IV ACGT 1 cut(s) 783
HpyCH4V TGCA 6 cut(s) 25, 227, 1225, 1331, 1377, 1463
HpyF3I CTNAG 3 cut(s) 486, 1359, 1765
HpySE526I ACGT 1 cut(s) 783
Hsp92II CATG 5 cut(s) 356, 713, 929, 1133, 1196
KroI GCCGGC 1 cut(s) 5
KroNI GCCGGC 1 cut(s) 7
Kzo9I GATC 5 cut(s) 444, 713, 1449, 1580, 1624
LmnI GCTCC 5 cut(s) 303, 632, 965, 1206, 1604
Lsp1109I GCAGC 3 cut(s) 1315, 1413, 1447
LweI GCATC 3 cut(s) 460, 1234, 1692
MaeI CTAG 5 cut(s) 174, 300, 687, 1593, 1695
MaeII ACGT 1 cut(s) 783
MaeIII GTNAC 2 cut(s) 163, 986
MalI GATC 5 cut(s) 446, 715, 1451, 1582, 1626
MboI GATC 5 cut(s) 444, 713, 1449, 1580, 1624
MboII GAAGA 7 cut(s) 127, 205, 771, 1176, 1211, 1328, 1342
MfeI CAATTG 3 cut(s) 1273, 1304, 1545
MflI RGATCY 2 cut(s) 444, 1580
MlsI TGGCCA 1 cut(s) 1674
MluNI TGGCCA 1 cut(s) 1674
MlyI GAGTC 3 cut(s) 365, 1274, 1757
MmeI TCCRAC 1 cut(s) 730
Mox20I TGGCCA 1 cut(s) 1674
MroNI GCCGGC 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 1218
MscI TGGCCA 1 cut(s) 1674
MslI CAYNNNNRTG 1 cut(s) 242
Msp20I TGGCCA 1 cut(s) 1674
MspCI CTTAAG 1 cut(s) 514
MspI CCGG 2 cut(s) 6, 42
MspR9I CCNGG 3 cut(s) 271, 948, 1498
MunI CAATTG 3 cut(s) 1273, 1304, 1545
Mva1269I GAATGC 3 cut(s) 306, 850, 1483
MvaI CCWGG 3 cut(s) 271, 948, 1498
NaeI GCCGGC 1 cut(s) 7
NdeI CATATG 1 cut(s) 1259
NdeII GATC 5 cut(s) 444, 713, 1449, 1580, 1624
NgoMIV GCCGGC 1 cut(s) 5
NlaIII CATG 5 cut(s) 356, 713, 929, 1133, 1196
NlaIV GGNNCC 4 cut(s) 413, 439, 1208, 1576
NmuCI GTSAC 1 cut(s) 163
NspV TTCGAA 2 cut(s) 216, 567
PagI TCATGA 2 cut(s) 352, 925
PctI GAATGC 3 cut(s) 306, 850, 1483
PdiI GCCGGC 1 cut(s) 7
PdmI GAANNNNTTC 1 cut(s) 1218
PfeI GAWTC 4 cut(s) 15, 607, 1059, 1757
PkrI GCNGC 3 cut(s) 1330, 1428, 1462
PleI GAGTC 3 cut(s) 364, 1273, 1757
PpsI GAGTC 3 cut(s) 364, 1273, 1757
PsiI TTATAA 1 cut(s) 666
Psp6I CCWGG 3 cut(s) 269, 946, 1496
PspGI CCWGG 3 cut(s) 269, 946, 1496
PspN4I GGNNCC 4 cut(s) 413, 439, 1208, 1576
PspPI GGNCC 3 cut(s) 437, 550, 777
PsuI RGATCY 2 cut(s) 444, 1580
RsaI GTAC 2 cut(s) 1201, 1403
RsaNI GTAC 2 cut(s) 1200, 1402
RseI CAYNNNNRTG 1 cut(s) 242
SatI GCNGC 3 cut(s) 1329, 1427, 1461
Sau3AI GATC 5 cut(s) 444, 713, 1449, 1580, 1624
Sau96I GGNCC 3 cut(s) 437, 550, 777
SchI GAGTC 3 cut(s) 365, 1274, 1757
ScrFI CCNGG 3 cut(s) 271, 948, 1498
SfaNI GCATC 3 cut(s) 460, 1234, 1692
SfcI CTRYAG 1 cut(s) 1024
SfuI TTCGAA 2 cut(s) 216, 567
SinI GGWCC 2 cut(s) 437, 777
SmiMI CAYNNNNRTG 1 cut(s) 242
SmlI CTYRAG 4 cut(s) 206, 514, 912, 1482
SmoI CTYRAG 4 cut(s) 206, 514, 912, 1482
SsiI CCGC 1 cut(s) 963
SspMI CTAG 5 cut(s) 174, 300, 687, 1593, 1695
StyD4I CCNGG 3 cut(s) 269, 946, 1496
TaaI ACNGT 3 cut(s) 54, 511, 1012
TaiI ACGT 1 cut(s) 786
TaqI TCGA 3 cut(s) 216, 567, 1057
TaqII GACCGA 1 cut(s) 794
TatI WGTACW 1 cut(s) 1199
TfiI GAWTC 4 cut(s) 15, 607, 1059, 1757
TscAI CASTG 2 cut(s) 168, 1363
TseFI GTSAC 1 cut(s) 163
TseI GCWGC 3 cut(s) 1328, 1426, 1460
Tsp45I GTSAC 1 cut(s) 163
TspGWI ACGGA 1 cut(s) 716
TspRI CASTG 2 cut(s) 168, 1363
Vha464I CTTAAG 1 cut(s) 514
VpaK11BI GGWCC 2 cut(s) 437, 777
XapI RAATTY 6 cut(s) 770, 889, 930, 978, 1070, 1363
XbaI TCTAGA 1 cut(s) 173
XmiI GTMKAC 2 cut(s) 1135, 1833
XmnI GAANNNNTTC 1 cut(s) 1218
XspI CTAG 5 cut(s) 174, 300, 687, 1593, 1695
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.