Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0006740

Physical Location & Seq

Genomic Coordinates Forward (+)

59837336 .. 59837695

Gene Structure 360 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG413800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGCAGCCGGGAATGAAGAGTGGAGGAAAACGGCAGACACTCACAAAATGAGTCCAGAGGAAGTCAAAGGGGCAGGAGTGGAGAGATCAAAAAGGCCACCTGGCCATAACCCTGGGGGTGTTCTTCACCAGAGGCGCAACCTTCCTTTTAGCGCCACTGGGATGCTCCTCGGTGGCTTCCTCATCTGCACCGCCATAGGCTACTTCACCCTCCTCGCCATGAAAAAACCCGAAGCCTCTGCACGAGATGTTGCCAGGGTTTCCACCAATATCGCCGACCCTGAGGACACAAAACACAGGCCGGGTGACACAGTGCCCGCGCCAGGCCGGAAGGGAACTAGTAGTAGCGCTGTCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

119

Amino Acids

12.69

Weight (kDa)

9.72

Isoelectric Point (pI)

59.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31830
malus_domestica	MD08G1056200.v1.1 MD15G1040800.v1.1 MD15G1144300.v1.1
prunus_persica	Prupe.1G394000_v2.0.a1 Prupe.7G263500_v2.0.a1
pyrus_communis	pycom02g00590
rosa_chinensis	RchiOBHm_Chr6g0299391
rosa_laevigata	RLG00000011436 RLG00000015702
rosa_multiflora	Rmu_sc0013965.1_g000003 Rmu_sc0017526.1_g000003 Rmu_ssc0000347.1_g000006
rosa_roxburghii	Rroxscaffold_7G00168730
rosa_rugosa	Rorug01G0461500 Rorug06G0287900
rosa_samantha	Rh2AG010400 Rh2BG011000 Rh2CG011900 Rh2DG012900 Rh6AG399400 Rh6BG408000 Rh6CG413800 Rh6DG400600
rosa_wichuraiana	Rw2G000930 Rw6G034970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	320
AciI	CCGC	2 cut(s)	192, 318
AcoI	YGGCCR	1 cut(s)	103
AfeI	AGCGCT	1 cut(s)	349
AfiI	CCNNNNNNNGG	1 cut(s)	323
AhlI	ACTAGT	1 cut(s)	338
AjnI	CCWGG	4 cut(s)	100, 112, 254, 322
Aor51HI	AGCGCT	1 cut(s)	349
AoxI	GGCC	4 cut(s)	95, 103, 299, 325
ApeKI	GCWGC	1 cut(s)	5
AspLEI	GCGC	4 cut(s)	138, 155, 322, 350
AsuC2I	CCSGG	2 cut(s)	10, 303
AsuHPI	GGTGA	3 cut(s)	119, 199, 317
AxyI	CCTNAGG	1 cut(s)	282
BaeGI	GKGCMC	1 cut(s)	318
BalI	TGGCCA	1 cut(s)	105
BauI	CACGAG	1 cut(s)	243
BbvI	GCAGC	1 cut(s)	17
BceAI	ACGGC	1 cut(s)	48
BcgI	CGANNNNNNTGC	2 cut(s)	221, 255
BciT130I	CCWGG	4 cut(s)	102, 114, 256, 324
BcnI	CCSGG	2 cut(s)	10, 303
BcuI	ACTAGT	1 cut(s)	338
BfaI	CTAG	1 cut(s)	339
BfoI	RGCGCY	2 cut(s)	156, 351
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	6 cut(s)	10, 102, 114, 256, 303, 324
BmrFI	CCNGG	6 cut(s)	10, 102, 114, 256, 303, 324
BmrI	ACTGGG	1 cut(s)	168
BmsI	GCATC	1 cut(s)	153
BmuI	ACTGGG	1 cut(s)	168
BpuMI	CCSGG	2 cut(s)	10, 303
BsaJI	CCNNGG	4 cut(s)	112, 113, 169, 255
Bsc4I	CCNNNNNNNGG	1 cut(s)	323
Bse1I	ACTGG	1 cut(s)	163
Bse21I	CCTNAGG	1 cut(s)	282
BseBI	CCWGG	4 cut(s)	102, 114, 256, 324
BseDI	CCNNGG	4 cut(s)	112, 113, 169, 255
BseGI	GGATG	1 cut(s)	168
BseLI	CCNNNNNNNGG	1 cut(s)	323
BseMII	CTCAG	1 cut(s)	273
BseNI	ACTGG	1 cut(s)	163
BseRI	GAGGAG	2 cut(s)	158, 203
BseSI	GKGCMC	1 cut(s)	318
BseXI	GCAGC	1 cut(s)	17
BsgI	GTGCAG	2 cut(s)	172, 225
Bsh1236I	CGCG	1 cut(s)	320
BshFI	GGCC	4 cut(s)	97, 105, 301, 327
BsiSI	CCGG	3 cut(s)	9, 302, 328
BslI	CCNNNNNNNGG	1 cut(s)	323
BsnI	GGCC	4 cut(s)	97, 105, 301, 327
Bsp1286I	GDGCHC	1 cut(s)	318
Bsp143I	GATC	1 cut(s)	86
BspACI	CCGC	2 cut(s)	192, 318
BspANI	GGCC	4 cut(s)	97, 105, 301, 327
BspCNI	CTCAG	1 cut(s)	274
BspFNI	CGCG	1 cut(s)	320
BsrI	ACTGG	1 cut(s)	163
BssECI	CCNNGG	4 cut(s)	112, 113, 169, 255
BssMI	GATC	1 cut(s)	86
BssSI	CACGAG	1 cut(s)	243
Bst2BI	CACGAG	1 cut(s)	243
Bst2UI	CCWGG	4 cut(s)	102, 114, 256, 324
Bst4CI	ACNGT	1 cut(s)	313
Bst6I	CTCTTC	1 cut(s)	12
BstC8I	GCNNGC	1 cut(s)	318
BstDEI	CTNAG	1 cut(s)	282
BstF5I	GGATG	1 cut(s)	168
BstFNI	CGCG	1 cut(s)	320
BstH2I	RGCGCY	2 cut(s)	156, 351
BstHHI	GCGC	4 cut(s)	138, 155, 322, 350
BstKTI	GATC	1 cut(s)	89
BstMBI	GATC	1 cut(s)	86
BstNI	CCWGG	4 cut(s)	102, 114, 256, 324
BstSCI	CCNGG	6 cut(s)	8, 100, 112, 254, 301, 322
BstSLI	GKGCMC	1 cut(s)	318
BstUI	CGCG	1 cut(s)	320
BstV1I	GCAGC	1 cut(s)	17
BstXI	CCANNNNNNTGG	1 cut(s)	113
Bsu36I	CCTNAGG	1 cut(s)	282
BsuRI	GGCC	4 cut(s)	97, 105, 301, 327
BtsCI	GGATG	1 cut(s)	168
BtsIMutI	CAGTG	2 cut(s)	156, 318
Cac8I	GCNNGC	1 cut(s)	318
CfoI	GCGC	4 cut(s)	138, 155, 322, 350
CviAII	CATG	1 cut(s)	220
CviJI	RGCY	8 cut(s)	8, 97, 105, 177, 201, 236, 301, 327
CviKI_1	RGCY	8 cut(s)	8, 97, 105, 177, 201, 236, 301, 327
DdeI	CTNAG	1 cut(s)	282
DpnI	GATC	1 cut(s)	88
DpnII	GATC	1 cut(s)	86
EaeI	YGGCCR	1 cut(s)	103
Eam1104I	CTCTTC	1 cut(s)	12
EarI	CTCTTC	1 cut(s)	12
Eco47III	AGCGCT	1 cut(s)	349
Eco81I	CCTNAGG	1 cut(s)	282
EcoRII	CCWGG	4 cut(s)	100, 112, 254, 322
FaeI	CATG	1 cut(s)	223
FaiI	YATR	3 cut(s)	108, 197, 221
FatI	CATG	1 cut(s)	219
FauI	CCCGC	1 cut(s)	325
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	1 cut(s)	175
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	1 cut(s)	339
GlaI	GCGC	4 cut(s)	137, 154, 321, 349
GluI	GCNGC	1 cut(s)	6
HaeII	RGCGCY	2 cut(s)	156, 351
HaeIII	GGCC	4 cut(s)	97, 105, 301, 327
HapII	CCGG	3 cut(s)	9, 302, 328
HhaI	GCGC	4 cut(s)	138, 155, 322, 350
Hin1II	CATG	1 cut(s)	223
Hin6I	GCGC	4 cut(s)	136, 153, 320, 348
HinP1I	GCGC	4 cut(s)	136, 153, 320, 348
HinfI	GANTC	1 cut(s)	52
HpaII	CCGG	3 cut(s)	9, 302, 328
HphI	GGTGA	3 cut(s)	119, 199, 317
Hpy188III	TCNNGA	1 cut(s)	56
HpyAV	CCTTC	2 cut(s)	152, 325
HpyCH4III	ACNGT	1 cut(s)	313
HpyCH4V	TGCA	2 cut(s)	189, 242
HpyF3I	CTNAG	1 cut(s)	282
Hsp92II	CATG	1 cut(s)	223
HspAI	GCGC	4 cut(s)	136, 153, 320, 348
Kzo9I	GATC	1 cut(s)	86
LmnI	GCTCC	1 cut(s)	171
Lsp1109I	GCAGC	1 cut(s)	17
LweI	GCATC	1 cut(s)	153
MaeI	CTAG	1 cut(s)	339
MaeIII	GTNAC	1 cut(s)	305
MalI	GATC	1 cut(s)	88
MboI	GATC	1 cut(s)	86
MboII	GAAGA	2 cut(s)	29, 116
MhlI	GDGCHC	1 cut(s)	318
MlsI	TGGCCA	1 cut(s)	105
MluNI	TGGCCA	1 cut(s)	105
MlyI	GAGTC	1 cut(s)	61
MnlI	CCTC	9 cut(s)	18, 52, 126, 179, 191, 221, 224, 247, 277
Mox20I	TGGCCA	1 cut(s)	105
MscI	TGGCCA	1 cut(s)	105
MslI	CAYNNNNRTG	1 cut(s)	161
Msp20I	TGGCCA	1 cut(s)	105
MspI	CCGG	3 cut(s)	9, 302, 328
MspR9I	CCNGG	6 cut(s)	10, 102, 114, 256, 303, 324
MvaI	CCWGG	4 cut(s)	102, 114, 256, 324
MvnI	CGCG	1 cut(s)	320
NciI	CCSGG	2 cut(s)	10, 303
NdeII	GATC	1 cut(s)	86
NlaIII	CATG	1 cut(s)	223
NmuCI	GTSAC	1 cut(s)	305
PasI	CCCWGGG	1 cut(s)	113
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	1 cut(s)	60
PpsI	GAGTC	1 cut(s)	60
Psp6I	CCWGG	4 cut(s)	100, 112, 254, 322
PspGI	CCWGG	4 cut(s)	100, 112, 254, 322
RseI	CAYNNNNRTG	1 cut(s)	161
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	1 cut(s)	86
SchI	GAGTC	1 cut(s)	61
ScrFI	CCNGG	6 cut(s)	10, 102, 114, 256, 303, 324
SduI	GDGCHC	1 cut(s)	318
SetI	ASST	2 cut(s)	103, 144
SfaNI	GCATC	1 cut(s)	153
SmiMI	CAYNNNNRTG	1 cut(s)	161
SpeI	ACTAGT	1 cut(s)	338
SsiI	CCGC	2 cut(s)	192, 318
SspMI	CTAG	1 cut(s)	339
StyD4I	CCNGG	6 cut(s)	8, 100, 112, 254, 301, 322
TaaI	ACNGT	1 cut(s)	313
TscAI	CASTG	2 cut(s)	163, 318
TseFI	GTSAC	1 cut(s)	305
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	1 cut(s)	305
TspDTI	ATGAA	2 cut(s)	30, 236
TspRI	CASTG	2 cut(s)	163, 318
XspI	CTAG	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.