Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0006740

Physical Location & Seq

Genomic Coordinates Forward (+)

59698248 .. 59698547

Gene Structure 300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG399400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGAGTCCAGAGGAAGTGAAAGGGGCAGGAGTGGAGGGATCAAAAAGGCCACCTGGCCATAACCCTGGGGGTGTTCTTCACCAGAGGCGCAACCTTCATATTAGCCCCACAGGGACGCTCCTCGGTGGCTTGCTCATCTGCACCGCCATAGGCTACTTCACCCTCTACGCCTTGAAAAAACCCGAAGCCTCTGCACGAGATGTTGCCAGGGTTTCCACCAATATCGCCGACCCTGAGGACACAAAACCCAGGCCGGGTGACACAGTGCCCAGTGCCCACGCCAGGCCGGAAGTGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

99

Amino Acids

10.45

Weight (kDa)

8.93

Isoelectric Point (pI)

62.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31830
malus_domestica	MD08G1056200.v1.1 MD15G1040800.v1.1 MD15G1144300.v1.1
prunus_persica	Prupe.1G394000_v2.0.a1 Prupe.7G263500_v2.0.a1
pyrus_communis	pycom02g00590
rosa_chinensis	RchiOBHm_Chr6g0299391
rosa_laevigata	RLG00000011436 RLG00000015702
rosa_multiflora	Rmu_sc0013965.1_g000003 Rmu_sc0017526.1_g000003 Rmu_ssc0000347.1_g000006
rosa_roxburghii	Rroxscaffold_7G00168730
rosa_rugosa	Rorug01G0461500 Rorug06G0287900
rosa_samantha	Rh2AG010400 Rh2BG011000 Rh2CG011900 Rh2DG012900 Rh6AG399400 Rh6BG408000 Rh6CG413800 Rh6DG400600
rosa_wichuraiana	Rw2G000930 Rw6G034970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	144
AclWI	GGATC	1 cut(s)	46
AcoI	YGGCCR	1 cut(s)	55
AfiI	CCNNNNNNNGG	2 cut(s)	254, 282
AgsI	TTSAA	1 cut(s)	175
AjnI	CCWGG	5 cut(s)	52, 64, 206, 248, 281
AlwI	GGATC	1 cut(s)	46
AoxI	GGCC	4 cut(s)	47, 55, 251, 284
AspLEI	GCGC	1 cut(s)	90
AsuC2I	CCSGG	1 cut(s)	255
AsuHPI	GGTGA	3 cut(s)	71, 151, 269
AxyI	CCTNAGG	1 cut(s)	234
BaeGI	GKGCMC	2 cut(s)	270, 277
BalI	TGGCCA	1 cut(s)	57
BauI	CACGAG	1 cut(s)	195
BcgI	CGANNNNNNTGC	2 cut(s)	173, 207
BciT130I	CCWGG	5 cut(s)	54, 66, 208, 250, 283
BcnI	CCSGG	1 cut(s)	255
BfaI	CTAG	1 cut(s)	298
Bme1390I	CCNGG	6 cut(s)	54, 66, 208, 250, 255, 283
BmrFI	CCNGG	6 cut(s)	54, 66, 208, 250, 255, 283
BmrI	ACTGGG	1 cut(s)	264
BmuI	ACTGGG	1 cut(s)	264
BpuMI	CCSGG	1 cut(s)	255
BsaJI	CCNNGG	5 cut(s)	64, 65, 121, 207, 248
Bsc4I	CCNNNNNNNGG	2 cut(s)	254, 282
Bse1I	ACTGG	1 cut(s)	270
Bse21I	CCTNAGG	1 cut(s)	234
BseBI	CCWGG	5 cut(s)	54, 66, 208, 250, 283
BseDI	CCNNGG	5 cut(s)	64, 65, 121, 207, 248
BseLI	CCNNNNNNNGG	2 cut(s)	254, 282
BseMII	CTCAG	1 cut(s)	225
BseNI	ACTGG	1 cut(s)	270
BseRI	GAGGAG	1 cut(s)	110
BseSI	GKGCMC	2 cut(s)	270, 277
BsgI	GTGCAG	2 cut(s)	124, 177
BshFI	GGCC	4 cut(s)	49, 57, 253, 286
BsiSI	CCGG	2 cut(s)	254, 287
BslFI	GGGAC	1 cut(s)	127
BslI	CCNNNNNNNGG	2 cut(s)	254, 282
BsmFI	GGGAC	1 cut(s)	127
BsnI	GGCC	4 cut(s)	49, 57, 253, 286
Bsp1286I	GDGCHC	2 cut(s)	270, 277
Bsp143I	GATC	1 cut(s)	38
BspACI	CCGC	1 cut(s)	144
BspANI	GGCC	4 cut(s)	49, 57, 253, 286
BspCNI	CTCAG	1 cut(s)	226
BspPI	GGATC	1 cut(s)	46
BsrI	ACTGG	1 cut(s)	270
BssECI	CCNNGG	5 cut(s)	64, 65, 121, 207, 248
BssMI	GATC	1 cut(s)	38
BssSI	CACGAG	1 cut(s)	195
Bst2BI	CACGAG	1 cut(s)	195
Bst2UI	CCWGG	5 cut(s)	54, 66, 208, 250, 283
Bst4CI	ACNGT	1 cut(s)	265
BstC8I	GCNNGC	1 cut(s)	131
BstDEI	CTNAG	1 cut(s)	234
BstHHI	GCGC	1 cut(s)	90
BstKTI	GATC	1 cut(s)	41
BstMBI	GATC	1 cut(s)	38
BstNI	CCWGG	5 cut(s)	54, 66, 208, 250, 283
BstSCI	CCNGG	6 cut(s)	52, 64, 206, 248, 253, 281
BstSLI	GKGCMC	2 cut(s)	270, 277
BstXI	CCANNNNNNTGG	1 cut(s)	65
Bsu36I	CCTNAGG	1 cut(s)	234
BsuRI	GGCC	4 cut(s)	49, 57, 253, 286
BtsIMutI	CAGTG	2 cut(s)	270, 277
Cac8I	GCNNGC	1 cut(s)	131
CfoI	GCGC	1 cut(s)	90
CseI	GACGC	1 cut(s)	124
CviJI	RGCY	8 cut(s)	49, 57, 105, 129, 153, 188, 253, 286
CviKI_1	RGCY	8 cut(s)	49, 57, 105, 129, 153, 188, 253, 286
DdeI	CTNAG	1 cut(s)	234
DpnI	GATC	1 cut(s)	40
DpnII	GATC	1 cut(s)	38
EaeI	YGGCCR	1 cut(s)	55
Eco81I	CCTNAGG	1 cut(s)	234
EcoRII	CCWGG	5 cut(s)	52, 64, 206, 248, 281
FaiI	YATR	3 cut(s)	60, 99, 149
FaqI	GGGAC	1 cut(s)	127
FspBI	CTAG	1 cut(s)	298
GlaI	GCGC	1 cut(s)	89
HaeIII	GGCC	4 cut(s)	49, 57, 253, 286
HapII	CCGG	2 cut(s)	254, 287
HgaI	GACGC	1 cut(s)	124
HhaI	GCGC	1 cut(s)	90
Hin6I	GCGC	1 cut(s)	88
HinP1I	GCGC	1 cut(s)	88
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	2 cut(s)	254, 287
HphI	GGTGA	3 cut(s)	71, 151, 269
Hpy166II	GTNNAC	1 cut(s)	295
Hpy188III	TCNNGA	1 cut(s)	8
Hpy8I	GTNNAC	1 cut(s)	295
HpyAV	CCTTC	1 cut(s)	104
HpyCH4III	ACNGT	1 cut(s)	265
HpyCH4V	TGCA	2 cut(s)	141, 194
HpyF3I	CTNAG	1 cut(s)	234
HspAI	GCGC	1 cut(s)	88
Kzo9I	GATC	1 cut(s)	38
LmnI	GCTCC	1 cut(s)	123
MaeI	CTAG	1 cut(s)	298
MaeIII	GTNAC	1 cut(s)	257
MalI	GATC	1 cut(s)	40
MboI	GATC	1 cut(s)	38
MboII	GAAGA	1 cut(s)	68
MhlI	GDGCHC	2 cut(s)	270, 277
MlsI	TGGCCA	1 cut(s)	57
MluNI	TGGCCA	1 cut(s)	57
MlyI	GAGTC	1 cut(s)	13
MnlI	CCTC	7 cut(s)	4, 28, 78, 131, 173, 199, 229
Mox20I	TGGCCA	1 cut(s)	57
MscI	TGGCCA	1 cut(s)	57
Msp20I	TGGCCA	1 cut(s)	57
MspI	CCGG	2 cut(s)	254, 287
MspR9I	CCNGG	6 cut(s)	54, 66, 208, 250, 255, 283
MvaI	CCWGG	5 cut(s)	54, 66, 208, 250, 283
NciI	CCSGG	1 cut(s)	255
NdeII	GATC	1 cut(s)	38
NmuCI	GTSAC	1 cut(s)	257
PasI	CCCWGGG	1 cut(s)	65
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
Psp6I	CCWGG	5 cut(s)	52, 64, 206, 248, 281
PspGI	CCWGG	5 cut(s)	52, 64, 206, 248, 281
Sau3AI	GATC	1 cut(s)	38
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	6 cut(s)	54, 66, 208, 250, 255, 283
SduI	GDGCHC	2 cut(s)	270, 277
SetI	ASST	2 cut(s)	55, 96
SsiI	CCGC	1 cut(s)	144
SspMI	CTAG	1 cut(s)	298
StyD4I	CCNGG	6 cut(s)	52, 64, 206, 248, 253, 281
TaaI	ACNGT	1 cut(s)	265
TscAI	CASTG	2 cut(s)	270, 277
TseFI	GTSAC	1 cut(s)	257
Tsp45I	GTSAC	1 cut(s)	257
TspDTI	ATGAA	1 cut(s)	86
TspRI	CASTG	2 cut(s)	270, 277
XspI	CTAG	1 cut(s)	298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.